XLOC_026636


Basic Information

Item Value
gene id XLOC_026636
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38971435 ~ 38975698 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053077
cctcgacaagtccaaagacatgcggtacagatgaattgggtaagcaaatttggccatagtgtgtgaataagtgtgtatgggtgttttccagtgatgggttgcagctagaagggcatccgctgtgtaaaacacatgctggatatgttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgaaaataaaataaatggatggatgattttattttgcaatagatTCTGACTTTCGTGCTGCTCTAATTCTGCTCCCCCATATTCTTAAAGAGGAAAATGATTGCTTACAGTAATTACACTGGAAGAGGTTTGGGTACTGTTGGTTAAACACTTTGTAATACTCTGATAGATGTTATGCAGTTCTGACagattttacattgtttattgatgtcctttactttttcttttcacagtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCCGTTTTAGAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCATGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTTACTGCATTTACTTTGCTGCATGCGTTTTGAGTCGGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTAAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTCATGTGCATGTGAGACCGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCactaacaaaaatgtattttattaggtCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTactggtgtttaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACtttcatcttttaaaaaggtGACAGTGTAATTGTTTTGAATCTTTCCATGTGTGTTTGTGATAAAATGTTACAggtataaaattacaattatcgTGCAGTTTGTACTCATggaaaaatattgctttttattctttcaaaatgatgtaatgtttaaacatttatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaATAAATTTATTGTGTATGGAGTACAAATCTGAAATGAAAGGGTACAAAATTCATCCCTATGGAGGAGAAATTGTACCTTTTTTAAAGGTACATTATTGTACCATAGCCCAAGTAAGGTACAAATTAGTCAGCAGAGGTACATATTTGACCCCTAAAGGTACATACTGctagggtacaaatatgtacccatGTGAAAGGGTACAACAGGTGTACCCTTgagggtactgccccagtgacaagccattgtaccccaaaaggtacaaattttgca
>TCONS_00052479
AGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATCGACCTGAAGGACGCAAAGACGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATGAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTCGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCCAAGTCTACAAAAAAACAAGAGAATAGAAGTTTGCGGATGATCTAACAggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttaaaactcggcatttctgtgtggagttgcatgttgtccccatgttggcgtgggttttctccgggtgctccggtttcctcgacaagtccaaagacatgcggtacagatgaattggtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCCGTTTTAGAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCATGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTTACTGCATTTACTTTGCTGCATGCGTTTTGAGTCGGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTAAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTCATGTGCATGTGAGACCGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCactaacaaaaatgtattttattaggtCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTactggtgtttaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACtttcatcttttaaaaaggtGACAGTGTAATTGTTTTGAATCTTTCCATGTGTGTTTGTGATAAAATGTTACAggtataaaattacaattatcgTGCAGTTTGTACTCATggaaaaatattgctttttattctttcaaaatgatgtaatgtttaaacatttatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaATAAATTTATTGTGTATGGAGTACAAATCTGAAATGAAAGGGTACAAAATTCATCCCTATGGAGGAGAAATTGTACCTTTTTTAAAGGTACATTATTGTACCATAGCCCAAGTAAGGTACAAATTAGTCAGCAGAGGTACATATTTGACCCCTAAAGGTACATACTGctagggtacaaatatgtacccatGTGAAAGGGTACAACAGGTGTACCCTTgagggtactgccccagtgacaagccattgtaccccaaaaggtacaaattttgca
>TCONS_00053078
AAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatttttttttaacttgcggGTCTGCACAGCGGGGCATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATCGACCTGAAGGACGCAAAGACGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATGAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTCGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCCAAGTCTACAAAAAAACAAGAGAATAGAAGTTTGCGGATGATCTAACAGTTATTAACATAAAACTTACGTAATAATAATTTTGCTAGATCAAACCCTTATTTCTTGGATGTGATCATTAAGTGCCTTTTCAAGCTGGATTTAGCAAGTTCAAACTCGTGGGCCTTATATACAAACCCTTTATATACAGAACATTccttaatgtttttctttaaaaaaatgtaattcataaaaatacatCAATATCTTTTATTCAGCATTTGCTAAACATTCCaataattttatctttattttaaaaacaggtcctttatattattaaattatttaagagtacttcattatttgtctttattttattttagggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggtttaaaactcggcatttctgtgtggagttgcatgttgtccccatgttggcgtgggttttctccgggtgctccggtttcctcgacaagtccaaagacatgcggtacagatgaattggtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCCGTTTTAGAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCATGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTTACTGCATTTACTTTGCTGCATGCGTTTTGAGTCGGCATCAGTATTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTAAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTCATGTGCATGTGAGACCGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTgataaaatgtttcttaagaatgtttagaaatttcaaatcaaatgtgtaaaactgtttgatcaaaagtgtttttgagatctaaaatgaTTAAGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCactaacaaaaatgtattttattaggtCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTactggtgtttaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACtttcatcttttaaaaaggtGACAGTGTAATTGTTTTGAATCTTTCCATGTGTGTTTGTGATAAAATGTTACAggtataaaattacaattatcgTGCAGTTTGTACTCATggaaaaatattgctttttattctttcaaaatgatgtaatgtttaaacatttatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaATAAATTTATTGTGTATGGAGTACAAATCTGAAATGAAAGGGTACAAAATTCATCCCTATGGAGGAGAAATTGTACCTTTTTTAAAGGTACATTATTGTACCATAGCCCAAGTAAGGTACAAATTAGTCAGCAGAGGTACATATTTGACCCCTAAAGGTACATACTGctagggtacaaatatgtacccatGTGAAAGGGTACAACAGGTGTACCCTTgagggtactgccccagtgacaagccattgtaccccaaaaggtacaaattttgca
>TCONS_00053079
GCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatttttttttaacttgcggGTCTGCACAGCGGGGCATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGACGGAGGATCGACCTGAAGGACGCAAAGACGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGTGagtttaatgttaaataactTATTGTAAATATCCGTTGGGTCTTATTCAATTCATATTTGACGTTACTTTGCCTTGTGTATGTAGTTAAGATTAACGTTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACcagaaattaaaatatgattttttacatAACCTGGCCATGAGACAGAGCTCGAGACACTGGCAAAACAGCGGTGAAACGTCCAGAGAAACACATTTAAGTTAGTTTTGTTTGGATAATGTGGTTAAGTCTTTATTGCATAAGTTACGTTATTTATAAACTCAGAATTTCCTTAGTGTTGGGGAGCTAACATTCATGCTAACGTCCATGTTTATTTCGGAACGGAGTGAAGTGAATGCCTTCAtgtctgaaacaatataactttaACGTTAGTTTATGCATATCTCGACCCACGTCCATTCATAGCAGTTAAATAACGTTATAAATGCATGTTCAAGAGAGTCATAATCATCTGTCGTGTCAGATTGAGGTGCGGGTCATTTATCAAACCTTTAAGTTgctaatttaaagctttttttttttgctgttaaccTCAAGTTCACAAcgatcataattttttttctttcagaaaatGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTATGTATTTAGTATTTTGTATTTCATCTGTTtgttgataatatatatatatatatatatatatatatatatatatatatatatatttatatattatgtatgtgtgtgtgtgtgtgtgtatactttttCCCCAGGAATTCATTGTGCAGTCTTAAATTGAATCTCCTTTTTTTCTATGAAACTGTTAGGTGAAGTGTTAAAGTTATATTTGAATTTTTATGATTGTCATTATTATGGACTTATTATGGATATTTGATCCAATAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGGGTAATGCGAATGTCCTGCGTATCCA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053077 False 1907 lncRNA 0.35 1 38971435 38973341
TCONS_00052479 False 2041 lncRNA 0.37 6 38971435 38975355
TCONS_00053078 False 2612 lncRNA 0.36 5 38971435 38975614
TCONS_00053079 True 1439 lncRNA 0.37 1 38974260 38975698

Neighbor

gene id symbol gene type direction distance location
XLOC_026635 si:dkey-106c17.2 coding downstream 52718 38912557 ~ 38918717 (-)
XLOC_026634 znf281a coding downstream 187484 38762891 ~ 38783951 (-)
XLOC_026633 si:ch211-198m17.1 coding downstream 225837 38705425 ~ 38745598 (-)
XLOC_026632 mpp3a coding downstream 278515 38647987 ~ 38692920 (-)
XLOC_026631 BX936420.1 coding downstream 442019 38525979 ~ 38529416 (-)
XLOC_026637 NA coding upstream 136616 39112314 ~ 39113547 (-)
XLOC_026638 svilc coding upstream 137200 39112898 ~ 39171968 (-)
XLOC_026639 cdk21 coding upstream 200162 39175860 ~ 39180048 (-)
XLOC_026640 retsat coding upstream 205689 39181387 ~ 39190317 (-)
XLOC_026641 RETSAT coding upstream 216117 39191815 ~ 39198113 (-)
XLOC_026626 NA non-coding downstream 1322046 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1386628 37581522 ~ 37584807 (-)
XLOC_026621 CT573704.2 non-coding downstream 1895622 37075698 ~ 37075813 (-)
XLOC_026619 NA non-coding downstream 1999213 36969403 ~ 36972222 (-)
XLOC_026646 CU464118.1 non-coding upstream 396175 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 586086 39561784 ~ 39563301 (-)
XLOC_026651 BX322795.1 non-coding upstream 673747 39649445 ~ 39649562 (-)
XLOC_026653 BX649356.2 non-coding upstream 970167 39945865 ~ 39951527 (-)

Expression


Co-expression Network