LOC110531784 (LOC106577585)


Basic Information

Item Value
gene id LOC110531784
gene name LOC106577585
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24593366 ~ 24601145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615205.2
AGCAGGACTAATCTTTCTGACAGCAAATCAAAACACAGTCACAGAATATTTCATTTGCGGCATCTCCACGGAAGTACTCACTAAGAACTGAACCGGTGGACTCATTGGAAAAGACAGTACTAATAAGTGGGGTATCCCTCTGAATTTTAGGAATACATATCCCCAGCTTGACGTTCACAGGAACCATGAAGCTTCGGCTGCACTTTGTGGTGGACCCCATGGGCTGGTTCTGCATCAGTGTGGTGTTTGCCATCTGGCTCTACAACTCCTTCTTCGTCCCCAAGTTGGTGCTGCTGCCACATTTCTATGAGGGTCATATCCACTGGGCCTTGGTTGTCGGTTACTACTTAGCATCAGCCTTCTGTATGGCAGCACTTTTTAGAGCTTCTACAGCCGACCCTGGCAGACTCCCAACCGAACCCCACATCCCTCACTCAGAGCGAGAGCAGTGGGAAATGTGTAGCAAGTGCAACATGATGAGACCGAAAAGGTCCCACCACTGCAGTCGTTGTGGCCATTGTGTACGTAGAATGGACCACCACTGTCCATGGATCAATAATTGTGTAGGGGAGGACAACCACTGGCTCTTTTTGCAGCTCTGTTTTTACACACAGGTCCTCAGTTTGTTCACCCTGGCTCTGGACTTCTGCCAGTACTATTACTTCCAGTCCTTAACAACATTGGACCAGGAGGCATTTACTGCGCGTCACGAGCTCGCCCTGATACGAGTGTCTGCGATCATGGGTCTGGTGATGTTCGGAGGCATGAGCAGCCTCTTCTACACTCAGCTGGCTGGCATCCTGACAGACACCACCACCATTGAGAAAATGGCTAACTTCTCAAATAAAATAGGCGGGGCTGGTGGTGGGTCAAAGGAATCCTGGCAGCGGACTCTGGCTGAGGTGTTTGGCACCACCTGGAAAGTCCTGTGGTTCATCCCGTTGAGGAGCAGGCAACCGCTGACCTTTCCCCACCACTTCCGCACTCACGTGTAGATAAGTGAAGGAGCGCTGTCCCACTTCGAACCAGACGATAGGCTGCCATCTCTGACAGAGAATACACTGTGCACACATtcggcaccccccccccccccgcctgccTTCACCTCCCTGTTTTGTGCCATCTAAGCTCGGTGGTAGTCTTGGTTGGCCAGTGGATACACACAGtctttttgtctttctctctaggAGTAGGATTGACAGTGCCTGAACTGGATCACAAACTCGAGTACATGTTACCAAGTGCAACCTAGTCCCCTTTCTAATCAttactaggggctccattgtgctCTATTGTCCCATTGCGGAAACCACTTTAAAGGGAAATTGCTTTTGAGAGAAACTCAAAAGGAAATCACTAAGAACCTCAAGTTGATTGTAGGACCATGTAGACCTTCAAACGACACTAAATATTAACCCTAACTCTGTCCCCAATACACAGCCTAATTTTTCTATAATTTGTGCCATGACACTTTTAGTCAGTCTCCCAAATGGTTTGGATACACGCTTTTTTACAGAAGGCTATATAAGTCATTATTTTGGGAAGAAGTTGGCAAGTTGGTTTATGGGTTGCTATATTGTAAAGCAGTACCATGATTTAACTGCATTCCATAAGTATATGGTTCAAGGGTTCCTTTGCTTTACTGTTTACActaatatttattttaaatattttttaaaagatGCTCCTACCACTAGTAACACCTTAATATTAACTACATAGTAACCAACCATGAGTTATTTTCCATTCACAGCGGTAATGTCTTGTGTTCCACTTTCATTACTATCAATTAGACAACGTTTCCACAGAAGTGCTGAACTTTCACAGATATCCAGGATTAGAAACATCTCACAATGCTAGAAAGTCATCTGTTATAAAACACTATGTTTGCTTGAGACTTTTTCAAACCTCTACACTGCCTATTGCCAAATTATTTAACCTTACCAATGAAGATGATTTGAAAAATGTCCCAATGGAGAGTCACAGTGAAACAAGTGGATTGTATCAACATTTATTTCCAGCTATACCAAATACTTGTATTTATATCTATCTGCTGTTGTACACTTGGCTGTAACATTGTGCAAATGCACTGATATATTACCTCTATATTCTTTTGTACACATTCCACATTTTTTCAACATACATATGCTGTAGAAATCTTTGACGAATTACTCCTCTTTTAAtcttttaacatttttatttcaatGTTCTCATCACTTGTTGAGTTGATCATTTTTTTATGTATTGAATGTATGATGATAACGTTGTCTCCTGTACCTAATGTAAGACCCAGTGGAGTCTCAGAACACTGTACATGTAAGTGAGTAGGCACCGATTGATGTTGATTTGTTCTTATGTTGAATGTGGGGACGGCTGCTGTAAATTGTCTGTCATATTTCTAGTTTCTCCTTTTCTGTAGCTTGATTGGTCGTAAATGGTAGTGGACGCtggaatattttttgttgttgtaataacaATAGGGTCTTTAATTTGAATTTCCTGGTTGACATTGTAGTATGTTTTCTACTCTTTACTTCATCATATAAGATGCATCATATATGGGGAATGTTAATGTTACAATaatgaaaaatacatgtttttcgtTTAGAAATATTTGTCAATGGCACGTCACCAATAGGAGTGCCACCAACTGTCTTAAACCATGTACAATTTTTGTTTTTTAACACTACATAAACTGTAAGTCTAAAAAGGACCCTGGTGAGGAACTGTATGCTCATTTCATCAACTGGTGTCCCACAGGGCTTGATGCTAGGTCCCCTGCTGTTCCCATGTGTGTCTTCTAcactccccaaccctcccctactTAAACGTTATCTCTCTCCTAACTTCATCACTTGTGATGGATCCTCCATTGTCTTATGACactatataatgtaatgtaccaCTTCCTCTGTAATCATTCAACTTCGTGCTACTGAAATCTGCACTTTATTACATCCCATGATCTTAGAATTTAGCACTTTTTGATTTTAGTAAGGAATTTGCCATTAACCTTTGCCATAGCATTAACATAGGTATTTTTTAGTTGGTTGTTTAGCCCCCTTATTATAATTAACTTTTAATAAGTGGCTCTAGATAAGTGTCTATGCTAAATTACAAATGTACTAGGAAGGAGAGTCCacatatacagatgtaggatcttaatttgagccagtttgcacgAACAAttatcctgcaacaacaggacgtgaattattatgtggattataatgaattgaCGTTTTGTTgaattgatacatttttcataa

Function

NR:

description
probable palmitoyltransferase ZDHHC21

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615205.2 True 3269 mRNA 0.41 8 24593366 24601145

Neighbor

gene id symbol gene type direction distance location
LOC110531782 LOC106577586 coding downstream 7546 24491320 ~ 24585820 (-)
LOC110531778 NA coding downstream 225736 24270114 ~ 24367630 (-)
LOC110531777 LOC106577588 coding downstream 334387 24246651 ~ 24258979 (-)
LOC110531776 ddit4l coding downstream 365157 24224829 ~ 24228209 (-)
LOC110531775 LOC107706756 coding downstream 384386 24206453 ~ 24208980 (-)
LOC110531786 LOC106577584 coding upstream 29552 24630697 ~ 24705729 (-)
haus6 LOC106577582 coding upstream 109944 24711089 ~ 24721117 (-)
LOC118966244 NA coding upstream 111552 24712697 ~ 24712827 (-)
LOC118966243 NA coding upstream 112496 24713641 ~ 24713771 (-)
LOC110531803 NA coding upstream 150892 24752037 ~ 24759779 (-)
G785323 NA non-coding downstream 1839 24591299 ~ 24591527 (-)
G784987 NA non-coding downstream 164893 24428206 ~ 24428473 (-)
G784981 NA non-coding downstream 168782 24423737 ~ 24424584 (-)
G784852 LOC106577592 non-coding downstream 415899 24176911 ~ 24177467 (-)
G784848 NA non-coding downstream 423775 24169380 ~ 24169591 (-)
G785329 plap non-coding upstream 17049 24605485 ~ 24619053 (-)
G785370 LOC106577580 non-coding upstream 140482 24741627 ~ 24765206 (-)
G785397 NA non-coding upstream 205025 24806170 ~ 24808258 (-)
G785398 NA non-coding upstream 206612 24807757 ~ 24808732 (-)
G785481 NA non-coding upstream 224991 24826136 ~ 24826543 (-)
frem1a frem1 other downstream 745936 23845242 ~ 23876940 (-)
G784651 NA other downstream 785094 23806558 ~ 23808272 (-)
G784652 NA other downstream 791682 23800783 ~ 23801684 (-)
G784602 NA other downstream 853853 23737221 ~ 23739513 (-)
G785578 NA other upstream 361927 24963072 ~ 24965274 (-)
G787211 NA other upstream 689770 25290915 ~ 25291471 (-)
trmt44 trmt44 other upstream 693044 25294038 ~ 25309252 (-)
LOC110531812 LOC106577560 other upstream 754209 25338581 ~ 25365749 (-)

Expression


Co-expression Network