LOC110531796 (LOC106577576)


Basic Information

Item Value
gene id LOC110531796
gene name LOC106577576
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24780867 ~ 24783674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615224.2
gagagagtgagagtagagagagtgaatAATCCACGGGCATTTATTTTTAGAAGCTCTCTCGGTCGCTACGCACTTCATGTAGCCTACTACAACACAGCCCATGTTCTTCTGGTCAATAATTGAAACGGGTTTGGTACATTGGATTGGAACACAACACCCGAGCGCACAGCGTAAAGACGCGCAGGCCTATTCCGTAGTGTGATGTTTCAAGCTATATCCGGAATTTGGAGATGCCCACCTTTGCCAATGAGGCATCACCACTGCTCACGAGGATCCCTTCCAGAGGAACCGTGTGTCCTGATCCCAGGCTGCATGGTCTCGGAATACCAGGAAAAGTACCCTGCCTACTGCACCACTGTTGTCCGGGCAGCCAAGAAGCAGAATAATGAGTATCAGCGTCTGGAGGGAAGGATATCCAACATGACTACTTTCAAGTCAGACTACGTGGCCCATGAAGTGACCCAGAGGCCCCCAAAGGTCACCAAGGTGTATGTGCCACCTGACGGGAGAATGAGACACAGCAGCACCTACGCCAGGGACTACCCAACACACCCTGTTCAGAAGCACATCGTGACCAAGCCAGAAGAGTATCATCCGCCCACAGCAAAGATGGTCGCTCAGTCCTTATACAAAGGGGAATTCCGAGCATGGCACAACCAGAAAGTCCAACCCTACAGGACCTGTGACAACCTGAAGCTGAACGACAGCAAGTTCGAGGTGACCACCACCTTCCAAGACGACTACTGCCACAAGGGCCCAGCTGAGGCCAGGGAGAGCTTCAAACCGGCTGCCGACGCCCGAGAGACCCTGCCCTTTGACGGCACCACCAACTACCAGACGCAGTATGTCCCCCACCCGGTCCAGCCCAGGCAGCCCAAAGAGAGGGCCGTCTACAGGCCCACCAGCGCCCCCCTCAATGGGGTCTCCACCCACAGGCAGGACTACCGGGGCCTGCCAGCTGAGCCCGCCAAGCCCTTTAGGGCCAAGGTGGCCTGGGAGAGCAGCCCGGCTGTATTCCAGGGGACCAGTGAGTTCCGCGACCAGTACAAGGCCTGGCCCCTGCAGCCCAAGCACCGGCACCAGGCTGAGGAGTACTGCCCACCCGAGGGCACTATGGTCGGTCTGTCCACAGCTCATGCTGACTATGTCGACCACGAGAGCCAGCAGCGGCCCCAGTCCGCCCGTCCCCCGGTCGAGGCCTGGACAAAGGAGGCCAGAGAGCCCCTCCAGACCAGGTCCACCATGAAGGAGGACTACCGGACCTGGGACGTGGCCCGTCGTCCCCCCATGGTCTACGCAGATGAGCTAGAGAAACCCAAGGGGGCTTTCGCCAACACCACCACCTTCCGCTCAGCATACACGCCCAAGACGGCCCAGCGCGCCTCCAGCTTTAAACCCACCCAGAAGCTGCTGAGCCCCCAGACCATGGATGAAGACTCCATCTATCGCTCCACCTACACACCCAAGGAGATCCCACCTTGTCCAGCCCGGGATGGCTGTCCTCCTGGCTTTGAGTACAGCTCCATGGGGGCTGGAGGACACAGGATGTACCGAACCATCTCGGTACAGGAAACGGGGCTGAGTCAGCTGGCCGCTGCAACGTCTGATAAGCCCTCTTACTCCCACAGCAGAAAGAGCTGCAGGGTCCCCAGCCGAGCCAAGAGGGCGCCATAGAGTCCCGATCAcaaacctgcacacacacagatagctAGAGGGGATTCTTATATTTCTATTCAAATATATTAATAGACATTTTAGATGAATTCATCACGAGCACCTCAGGTATTTTGTATGGTCACTCACATAAAAAAAAGCATAATCCTGA

Function

NR:

description
stabilizer of axonemal microtubules 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615224.2 True 1825 mRNA 0.57 4 24780867 24783674

Neighbor

gene id symbol gene type direction distance location
LOC110531798 LOC106577580 coding upstream 10842 24735665 ~ 24770025 (+)
LOC110531793 LOC106577583 coding upstream 53989 24720025 ~ 24726878 (+)
LOC110531785 plap coding upstream 156571 24601334 ~ 24624296 (+)
LOC110531781 LOC106577736 coding upstream 296409 24456658 ~ 24484458 (+)
LOC110531780 bank1 coding upstream 377260 24369829 ~ 24403607 (+)
LOC110531804 NA coding downstream 10939 24794613 ~ 24795514 (+)
LOC118966018 NA coding downstream 11979 24795653 ~ 24800154 (+)
LOC110531795 LOC106577574 coding downstream 41625 24825299 ~ 24845982 (+)
si:ch211-119e14.1 LOC106577735 coding downstream 63984 24847658 ~ 24851652 (+)
trnaa-cgc NA coding downstream 68134 24851808 ~ 24851879 (+)
G785196 LOC100380740 non-coding upstream 9064 24705450 ~ 24771803 (+)
G785182 NA non-coding upstream 126998 24653558 ~ 24653869 (+)
G785033 NA non-coding upstream 295318 24485101 ~ 24485549 (+)
G785046 NA non-coding upstream 304803 24475761 ~ 24476064 (+)
G785026 NA non-coding upstream 328795 24451800 ~ 24452072 (+)
G785262 NA non-coding downstream 26040 24809714 ~ 24810262 (+)
G785404 NA non-coding downstream 40943 24824617 ~ 24824840 (+)
G785410 NA non-coding downstream 44210 24827884 ~ 24828109 (+)
G785433 NA non-coding downstream 114485 24898159 ~ 25000005 (+)
G785638 NA non-coding downstream 261750 25045424 ~ 25061013 (+)
G785138 NA other upstream 197990 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 693541 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 941753 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 976730 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 1001366 23765275 ~ 23780276 (+)
LOC110531788 LOC106577570 other downstream 146677 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 743999 25525371 ~ 25532692 (+)
G786091 NA other downstream 761557 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 929323 25712997 ~ 25742909 (+)
G786218 NA other downstream 1174410 25874527 ~ 25958867 (+)

Expression


Co-expression Network