LOC118966018


Basic Information

Item Value
gene id LOC118966018
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24795653 ~ 24800154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053213.1
gtgtgtagattgatgagaaaaaatatatattttagaataaggctgtaacataacattttgaaaaagccaaggggtctgaatactttccgaatgcagtgttTCAATAGCACACATTCTGTATACAACAAACCTGCCTGTCTAATTAAGCACTTGACACCACATCATCTCAAAATACATCTCATGCTCTTTTTGTAGTGAAACAGGCGCCCAAAGTACACCTTGCCAAAATGTGCTGGAAGATAGCGAAAACGGTTTTCCAGTAGTGGTAGAGATCCTCATGCCAGCCCTTGCACACATATTATAGCTTAATGCTGCCAGGGAAGCTAGCTCCTCGTCCTCGCTGACTGGAGTGCTTCAACATTGCAAGCATCCAGGAATGTGTACTGAGGTTTAATGAAGGTCTACCCAAGATCCCTGGCAGTGGAAAGTCTGTTCAGCCAACAGGTCAAGGCTCCATACCCCTCTGCCATTGACTTTAAGCAGTCACGCATGGTGACGTTTAAATGACAGATCTACCCACAAGGCCTAGCAGTGGAAAGTTTCTGGGTGGTAGAGACACCCTACCCTCATCCACTGAATTTGAACAGAGGCTGGAGTTGATGCGTGAAAAGTTACAACAGAAAATTGAGGAAGAGCGGAAGTGGTATACATTATTAGAActcccacacacccactccacgtTCTTCTTCTGGAAGGTATCTTCATCAACCACATGTTCACCAACCTCAACTGTGGGCCTGACCCAACTGATCTTATCACTGTATACGATCTTGTTGCAGACTGCACATGGAGGAGAGGCTCAACTGACAGATCCTTTTAATGTCCTCTTTGGGATCACAGAGGACACAATCCTTCAGGTTCTGGGAGATCAATCCTGCTCTTTTTGCTCACTTGGATTGACCAGATCTAGGGTAAGAGATGTCGTGATTCAGGTTAACTCTGACATCTCACTGATCATCTCCTGTTCCAGCTCAGGTAAATCAAGCCCAGTGTTGTGTGAACTAGCAGGCGAAATGGCATCCAGGCCGTCCTGGTGTCTGTTATCTCTGCCAAGCTGCGGTAGTTTGGAGTCACTGAAAAGGCTGTGCCTCAAGCCAAGCCCAATCCATCTATGGAGAATATAGACATTAAGGCCTCCCTTGCACCATTGACAGGAGCGGTCAAGGCTGTCATTGTCAACTCCGGAGAATGCCAGGAAAGAAGAGCAAGGAACAATGGATGCACTTTGAGAAATCGCACACAAAGTAAAACATTTTGCTTCAAAGGATTGTGTTGGTGGTCTTCTGGAAGATTCCctagtggagaaaaaaaaaatctgaaaagaCTGTATCCTATGGCAGCTTGGTGAGTCAAAACATGCTCATACTTTCACCTCCAGGAAAAATGCTTGACTCTCCTGTAATGTCAACCACTGAGAAAATATCCAGTGTTGAGCTGAAGTCAGAAGTCACTGAAGCTATTAGAAAGGCTCATTAGGTCTAGCAGAAGTCTATCTGCACAAATGTCTGCTGGCTGACCTGAGCCTTCAAGTAATCTGGCCAGTCAAACAAATCTGCCAGCTATGCCAGAAGAACATTTATCTACAACCGTTAGGCTCCGAGGCCTCTGAAATAATGGATTCCTTTGTGTGATATGAAGTGTGTCGCACAATCAGATTTGACAAAAGTGAAAGATCTATCTGTGGTTAATAGACTTACTAAAAGGTTGCAGAACATGCTGAGGGGATTCTGCTCTCGACTTTTGGCCCTTAAAAGTTCAGATCGAGACAAAGAGGAGAATCTAGAGCAAACTAAAAACATGTCACTCCTACTTTCATCCAAAAGTATATTAGATCTTCCAGGGGTCATGTCATCAGAAGAAGTGGCTCTTCGTGGAGGTCAGGGCATATGCTCCAGACCTATGATGGCTCTTAGCCCTCAGATCACTCAGCTTCACTTCGACTGTACCACCAAGGAAGTTATGAGCACCATTGTGACATTTTACAAGACAGAGGTTCCTGAGGAGGAATTGACATGTTCAGCTGAAGAGACGTCCTCGGATACGTCTCTTTTGGCTACCTCGTTTGTGGACAATGCCATGGCTTGGTTAGAGGACATCTCTGCCGCAAGTTCCAAAACTTCTTCATCAGAAAGTTTGTGCGTTGCTCCCAAAGCAGTAATTTGCGAAAGCTCAGTTGAAACGTTTCAGGCACAGGCAGCTAAACGACGATCAGAGTCCCGCACTTGTCAGGTCAGTCAACCAGATTTTGATATTCGACAGGATTTCTCTCCAACTTCTTCTATGAGCATGGATTTACAGCCAACTGATTTTGTCCTTCTACAGGGTACCTCAAGTTCTTCTGCGACTTCAACAAAGATCTGGCAAAGTGGTGTTGCCATTTCTGAATAAGAAAATGTGGACTACAGCACAGACGATTTGAGAGTTTTTCACTCAGTATCATCAACCAGATGTGAACACCACAGAAAAGCATCAGGCAAATCTTGTTTGCCATCCAAGGGGACATGATCAGTTCAGAGGAAATTATGACCTCAGGGGAGCTGGGGCAACTCCATGACATTGTGGGAACAATACTGGAGAGTGTGGAGACAGTTTGCAGTAAGGGGGGATAAAGAGCGTGGCGAGAGACTCAAAGGCCTTCATCTTCTTTATCTACTGTGGGAAAAGTCTCAAGGTCTCGAGATTTGGCAATACTCCCAGGAACTCCAATGTCAACTGAGTTGCTGGACAATAGTTCCCTATCGTTAGAAGCACATGCATTGATATGAAGAATGATACTGTGTCGAGGCCTCATTGACTGGCCCAAGAAATAATGGGGGTGAGCCTCGTCATTGAAAATCTTGATCCTGAAGTGCTGCAGCAGGTCACTTctgggcattttttttttttaatctcaaAGGAGAAGATTTGTGATTGCTGCTTCATTTGATCTTCCCTCCTTCATAATGGGGGTGGGTCAGGAAGCCTCATTTCACAATGTTCCATCAAGAGCGTCTGTCTAGTCACCGTAGCTCAAGTTCCGCTACTTCTCGATTGACAGAACTTGATGGTAGTAGTTAAATGATATCATtgagtattgttgtaattatttGGTGTTTATTACTTACTTTGGGCATCTTACTACACAATATGTAAACCTACACAATAGGAAAACCTATCAATGGTAATACTTTATACTCGTCTTGTTTTCAGTAACCCTGTGAATTGCTATTGTCTAAATTATGGTGATTTAAGAATTATATTCATTAAGACCATTTTTATTTTGAAACAATTATCCCTTCAAACTGATCAACAAAAAGGTCCAGCCCTCAGAGGAAGCAGAGGACCAGATTAAGTTTCCCCATGAGGAGGAGCATTGCATATGTAAATCTTACATCATTATTTCATCACATACTGTATTTTCCAGTCCCACAACATTAGCAACATTGCATTTTTTTGAATAGCACAAAATCTGTTTAAaacataaaatacatgtatgatTGTAGACTTTCTCTGCTGTCTCGAGCACCCCGCATAGTGCCGATGGCTGTCACGGCTCCACTAGAGAAGAGTCTTCCTGCAACTTCCAAACCCGAGGAGAAGAAACACAAACCCTTCATCTTTGTCAGGATGTTCTTGGCCATCAACAAATGCCTTCGCAACACCTTCAAACCTTCATTACAACAAGTAACAACACCTAATTAAGCAAAGACTTAATGCATTCAGTTGATCTCCATTGTAATCTTTTCATGTCTAATTTATTTAGCAAAAAGTCACTGTAAAATTAAATGTAACTCACTTGGTAAATATGTTTTGAAAACAGAGTATGCATACTGCTTGAGATGGAACCCTGGATGATAGTCTCTAGAGCATTAAATGTCTGACTTTTAAAGAAGTTAGTTTTCATTTTGTTCAGCATTATCAACATTTCGTGAACATTGTAAAGGGGGCCCTGAAAACTTGTGACTGTCACGCACTGACCTCAGAGAgactttttatgtctctatttggtttggtcagggtgtgatttgggtgggaattctatgtgttgtatttctttgtgtttggccgagtgtggttcccaatcagaggcagctgtctatcgttgtctctgattgggaatcatacttaggtagcctttttccccacctatgttgtgggatcCTGTCCTTGTATTATGGCTGTTGAGGCCTACAAGGCTGTACGTGTCGTTGGTTCGCTCGCTCTTTCCTGTTTTGCTGGTTATCATTAAAGAATATGATTAACCTACcccta

Function

NR:

description
uncharacterized protein LOC110500652

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053213.1 True 4251 mRNA 0.43 2 24795653 24800154

Neighbor

gene id symbol gene type direction distance location
LOC110531804 NA coding upstream 139 24794613 ~ 24795514 (+)
LOC110531796 LOC106577576 coding upstream 11979 24780867 ~ 24783674 (+)
LOC110531798 LOC106577580 coding upstream 25628 24735665 ~ 24770025 (+)
LOC110531793 LOC106577583 coding upstream 68775 24720025 ~ 24726878 (+)
LOC110531785 plap coding upstream 171357 24601334 ~ 24624296 (+)
LOC110531795 LOC106577574 coding downstream 25145 24825299 ~ 24845982 (+)
si:ch211-119e14.1 LOC106577735 coding downstream 47504 24847658 ~ 24851652 (+)
trnaa-cgc NA coding downstream 51654 24851808 ~ 24851879 (+)
dtx4a LOC103369650 coding downstream 51992 24852146 ~ 24866684 (+)
LOC110531800 LOC106577573 coding downstream 68937 24869091 ~ 24871866 (+)
G785196 LOC100380740 non-coding upstream 23850 24705450 ~ 24771803 (+)
G785182 NA non-coding upstream 141784 24653558 ~ 24653869 (+)
G785033 NA non-coding upstream 310104 24485101 ~ 24485549 (+)
G785046 NA non-coding upstream 319589 24475761 ~ 24476064 (+)
G785026 NA non-coding upstream 343581 24451800 ~ 24452072 (+)
G785262 NA non-coding downstream 9560 24809714 ~ 24810262 (+)
G785404 NA non-coding downstream 24463 24824617 ~ 24824840 (+)
G785410 NA non-coding downstream 27730 24827884 ~ 24828109 (+)
G785433 NA non-coding downstream 98005 24898159 ~ 25000005 (+)
G785638 NA non-coding downstream 245270 25045424 ~ 25061013 (+)
G785138 NA other upstream 212776 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 708327 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 956539 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 991516 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 1016152 23765275 ~ 23780276 (+)
LOC110531788 LOC106577570 other downstream 130197 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 727519 25525371 ~ 25532692 (+)
G786091 NA other downstream 745077 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 912843 25712997 ~ 25742909 (+)
G786218 NA other downstream 1157930 25874527 ~ 25958867 (+)

Expression


Co-expression Network