LOC110532976 (LOC106577575)


Basic Information

Item Value
gene id LOC110532976
gene name LOC106577575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24803312 ~ 24819424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987650.1
GTGGTTGAGTATATGACTATATGTTAATTTATTGCATGTACTGAATAGGTTATATAACTTATATGGTGAAGGGGGGTCAAGTGGTAACCAAGGGCAACAACCCCTGAACCTCGAGCTGAAAAGGACGTAAATTATTAATGTGCGCGGATGGAGGCGAGCATGAAGTGTAGCCCTGAATTTGGCACAGACCGGACTTCGGAgtgccagagtgtgtgtgtttagtgctTTGGTGTGTTTGTATCCTATTGACAGCACTTGGGAGTGTCAACGAGTGAAAGCTGCGCGGGCATCGTGTGTTGTGTGAATGGCGGATGACTAGGCTCGGTACAAAAATCGGTCACCTGTTCGCACCGCAGACTTTGCCCAGTGAGGGAGTGTGTACGGAAATTCTGTAACAGGCAGCTGGCAAGCGAAACTAGCAGCGGAACGGGGGCGCCTCGAGCTGTCAAGCGCGAGCCGATCGCTGAAGCGCTCCAGgGTTATAGGCTAGATTCCCACTGATACCGCTGCTGCcatgaagaggagggagTATCCAGTCGGCGAAGTCCTCATCATTCCAATGACATCGACTTCACCTTCACCCCAGGACTCAGCTCGACCCCAAGCCCTTCCCCTCCagccctcttcccctcctccccctgtctcctcccctcctccccccctttctctgtcCAATCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCTCCCAGAGCTGCCTCCCCTGACAACGACTCGGCTAGATCCCAAATCCTTCCCCTCCAgccctctccccccatctccaccTCTGTGGCTCCccgctcctcccttcctccccctctttcctcccctcctccacccctctgtctGTCCAGTCCCCAGCTCCAGGCGGAGTTTCTGAGGAGAGCTAGCCGTGGTCTCAGAACTGTCTCCTGCGACACCGACGATGTCCTCACCTCCCCCAGCTCCCCCCTGGTTTCACCCTTtacctccaccaccacttccCCCCTTACCTCCCCACCTcagcctctctcccccacctctccctttaGCTCTCCACCACAGCCCCTCTCCCCCACCACGCCCACTACAGAGGgccgCGCTACTCGCCTGTCTCTTTCCAGTCCTGAGCTGCTGACAGAGCTGCGTCGGTCTCAGTCCCGTCCTATGAAGCACGTCTCCATCTCTAAAGGACTCACCACTGTCTTCTGTGGACGGGGCAGGGGTGTAacgACTCCTAGCTCTGCTCCTGCCTCAGGAGCAACCAACCAGACACTCCGCTCAGACTCCACGGCCAATGGAAGAAGACAAGCGGGTCCCAAGCTGTCCAATGGGACATAGCGTTAGACTAAGTTAAAGTGCCTCTGAGGAAACCAGCTGCTGTATAGTGTCAATGTTATTGATATTAATGAAAACCAGTAGTACGGTGGCCTGAATATGATACATGATCAAACACTATCTATACTGCCATGTGCCAACAATAAACACAATGCAAACTAACCGACAGACGGACACACTTTAGCTCTTCATGTAAGACATGGAGAGCAATGTGTTGAGCTGAGGCATGCCTCACtcttgaaaaataaattataaaatGTATCATAA
>XM_036987649.1
AGGAGGGCACTTGGTCCCATGCATATGTctatctttgtctgtctgtcctgctGTGATGATTAATTCAACATGTTTTGATATGACTCTGTGTCTGCTGTCCTTTATGTTTTAGCTTAGTCTCCTGTATTTTATCTTTGTGTTTGCGCGGCTGTGTGTCTTCACTGAGCTTGTGCGTGTGACTGGTGGGTGAACCCTGGTCTAGGTTTGTATACAGATGTTTGTTTATGAACTGTGACCTGTTAGAAGGAATGTTCCTAGAGGGAACAACAGGTTGTAAGCTTATTAACTTCCAGGGGTATTTTCTGAAACCATTGCGCACACACAACTGACTAAACTCTAGCAGTGGTTGAGTATATGACTATATGTTAATTTATTGCATGTACTGAATAGGTTATATAACTTATATGGTGAAGGGGGGTCAAGTGGTAACCAAGGGCAACAACCCCTGAACCTCGAGCTGAAAAGGACGTAAATTATTAATGTGCGCGGATGGAGGCGAGCATGAAGTGTAGCCCTGAATTTGGCACAGACCGGACTTCGGAgtgccagagtgtgtgtgtttagtgctTTGGTGTGTTTGTATCCTATTGACAGCACTTGGGAGTGTCAACGAGTGAAAGCTGCGCGGGCATCGTGTGTTGTGTGAATGGCGGATGACTAGGCTCGGTACAAAAATCGGTCACCTGTTCGCACCGCAGACTTTGCCCAGTGAGGGAGTGTGTACGGAAATTCTGTAACAGGCAGCTGGCAAGCGAAACTAGCAGCGGAACGGGGGCGCCTCGAGCTGTCAAGCGCGAGCCGATCGCTGAAGCGCTCCAGgGTTATAGGCTAGATTCCCACTGATACCGCTGCTGCcatgaagaggagggagTATCCAGTCGGCGAAGTCCTCATCATTCCAATGACATCGACTTCACCTTCACCCCAGGACTCAGCTCGACCCCAAGCCCTTCCCCTCCagccctcttcccctcctccccctgtctcctcccctcctccccccctttctctgtcCAATCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCTCCCAGAGCTGCCTCCCCTGACAACGACTCGGCTAGATCCCAAATCCTTCCCCTCCAgccctctccccccatctccaccTCTGTGGCTCCccgctcctcccttcctccccctctttcctcccctcctccacccctctgtctGTCCAGTCCCCAGCTCCAGGCGGAGTTTCTGAGGAGAGCTAGCCGTGGTCTCAGAACTGTCTCCTGCGACACCGACGATGTCCTCACCTCCCCCAGCTCCCCCCTGGTTTCACCCTTtacctccaccaccacttccCCCCTTACCTCCCCACCTcagcctctctcccccacctctccctttaGCTCTCCACCACAGCCCCTCTCCCCCACCACGCCCACTACAGAGGgccgCGCTACTCGCCTGTCTCTTTCCAGTCCTGAGCTGCTGACAGAGCTGCGTCGGTCTCAGTCCCGTCCTATGAAGCACGTCTCCATCTCTAAAGGACTCACCACTGTCTTCTGTGGACGGGGCAGGGGTGTAacggtaagACTCCTAGCTCTGCTCCTGCCTCAGGAGCAACCAACCAGACACTCCGCTCAGACTCCACGGCCAATGGAAGAAGACAAGCGGGTCCCAAGCTGTCCAATGGGACATAGCGTTAGACTAAGTTAAAGTGCC

Function

NR:

description
proline-rich receptor-like protein kinase PERK2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987650.1 False 1585 mRNA 0.54 5 24803312 24819082
XM_036987649.1 True 1690 mRNA 0.54 5 24803554 24819424

Neighbor

gene id symbol gene type direction distance location
LOC110531801 LOC106577577 coding downstream 11120 24783891 ~ 24792192 (-)
LOC110531797 LOC100380740 coding downstream 25958 24770432 ~ 24777354 (-)
LOC110531803 NA coding downstream 43533 24752037 ~ 24759779 (-)
haus6 LOC106577582 coding downstream 82195 24711089 ~ 24721117 (-)
LOC110531808 cpz coding upstream 424773 25244197 ~ 25262199 (-)
LOC110531809 gpr78 coding upstream 443341 25262765 ~ 25267286 (-)
trmt44 trmt44 coding upstream 474614 25294038 ~ 25309252 (-)
LOC110531812 LOC106577560 coding upstream 519157 25338581 ~ 25365749 (-)
LOC110531813 LOC106577559 coding upstream 548768 25368192 ~ 25377186 (-)
G785370 LOC106577580 non-coding downstream 38106 24741627 ~ 24765206 (-)
G785329 plap non-coding downstream 184259 24605485 ~ 24619053 (-)
G785323 NA non-coding downstream 211785 24591299 ~ 24591527 (-)
G784987 NA non-coding downstream 374839 24428206 ~ 24428473 (-)
G784981 NA non-coding downstream 378728 24423737 ~ 24424584 (-)
G785481 NA non-coding upstream 6712 24826136 ~ 24826543 (-)
G785482 NA non-coding upstream 7307 24826731 ~ 24826987 (-)
G785483 NA non-coding upstream 8952 24828376 ~ 24828958 (-)
G785497 NA non-coding upstream 24168 24843592 ~ 24845968 (-)
G785501 NA non-coding upstream 32796 24852220 ~ 24852509 (-)
LOC110531775 LOC107706756 other downstream 594657 24206453 ~ 24208980 (-)
frem1a frem1 other downstream 955882 23845242 ~ 23876940 (-)
G784651 NA other downstream 995040 23806558 ~ 23808272 (-)
G784652 NA other downstream 1001628 23800783 ~ 23801684 (-)
G785578 NA other upstream 143648 24963072 ~ 24965274 (-)
G787211 NA other upstream 471491 25290915 ~ 25291471 (-)
G787386 NA other upstream 702614 25522038 ~ 25619623 (-)

Expression


Co-expression Network