si:ch211-119e14.1 (LOC106577735)


Basic Information

Item Value
gene id si:ch211-119e14.1
gene name LOC106577735
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24847658 ~ 24851652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615235.2
TGCCCTTCTTTAAATTTATGCATCCCCTTATCTAGTCAAAAAAAGTTCCACCACTGACACGCCTGTGAGTTCTTGCTTCCTCTCTGGGTGTCTGTTAATCTTTTTCAAAACCATCCTAAAGCATGTTCATTTAGAGCAAGATATTGATCCAGTAATACATCTATGTATGGATCAGCTGCAGTTGAAAGAAAAGAGCACCCTCAATTTCCAGTAAACTAGATCTCCTTCACGGCAGAGTTTGGCCTTGGATTCCTTCAACTTTTCGGATAACTATTTGAAGAGGCATGAACAACGTATATGACGAAACGACATCCACCAGAAAAGTATTGATCGCCTTCTTCCTCCTGGTCTTCCTTGTTTGCCTCCTGGTCTTCCTGTACATGTGGCTGAACCGCAAGACTAATGGCCAGTACACAGTCCGCCAACTGGTCTATGGGCAGAATGGGGCCAGGGACCGGATCATGGCTGGGGTCAGAGTCCTGGAAGTGCGGCTTGGGCGCCGGCTGTGGCCCCTTGGCGCGGATGAGGAGGCCATAAGAGAGGAGGAACACAAAAATGAAGAGAgggatgtggagagagggagcgagggaagggaaagtgggggggaggaggagggcgatgagagggaagacagaggggATGACTCGTCAGATGACTACTCCAGCATGGAGGGCTGTGACCTGAGGGAGAGAGCAAAGCTCACGGGCGAGAAGGAAGAGATAAGAGAgcgtgaggaggagagagaggagaatatgGAGGAAAAGTGGGAAAGcaaagaggatggagagagtgatgAGGGAGCAGTGGGAGGAGAAAAaagtggaggaggaggtttgCTGATAGACCTGCATCAGTTCTCTGGTAGTGCCATCTGGTCTGAAGATAGGAGTGAGGGGGGCAGAGACAAGGATGATGTGACTGCATTGTGAGGGAAGGATCAGCGAGGGACAATAGTTCCATATTTCATCTTTGTACAGCAATACCGCTTGACAGTAGGTTTGTCGTCATTATCATCATAATTGTAAATTGTAAACCTGACAAACCAGTGTTACAACCAGATTACAACAATCAGAGCAAAGAGCAAcataaataatatgtgtgaaataatAAATCAAAGTGAATAAAGGGACTGACAAGAGCAACAATTGCAGATTGAATACATGAAACAATATTTTTGAGATATTAAAAGCTTTTTTAAAGGTTTCATATGATGAAGCGCAGGCTTTGAGTGGTACTGTTTTCTGCATTAGTCTTATTACTATTGGAATATTTGTGGTGCAGTGTTCTAAagcactgcatatcagtgctagAGGCCTTATTACAGACACTCTGGTTCGATTCTAGGCTGTAACGCAACCAGCTGTGATTAGAAGTGCCATATGGTGGCGCACAATTAGCCTAACGTCATCCGGTTtaggccctcattgtaaataaaacatttgttcttaacagatTTGCctaggttaaaggttaaataaaatttcGAAAAATTAAAAGTGTGTTTTGTATATTTTAGGAATAGCTGTTTGTATTGAAATAAAGGGCCTAATTCGAA

Function

NR:

description
uncharacterized protein LOC110531802

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615235.2 True 1555 mRNA 0.44 3 24847658 24851652

Neighbor

gene id symbol gene type direction distance location
LOC110531795 LOC106577574 coding upstream 1676 24825299 ~ 24845982 (+)
LOC118966018 NA coding upstream 47504 24795653 ~ 24800154 (+)
LOC110531804 NA coding upstream 52144 24794613 ~ 24795514 (+)
LOC110531796 LOC106577576 coding upstream 63984 24780867 ~ 24783674 (+)
LOC110531798 LOC106577580 coding upstream 77633 24735665 ~ 24770025 (+)
trnaa-cgc NA coding downstream 156 24851808 ~ 24851879 (+)
dtx4a LOC103369650 coding downstream 494 24852146 ~ 24866684 (+)
LOC110531800 LOC106577573 coding downstream 17439 24869091 ~ 24871866 (+)
LOC110531788 LOC106577570 coding downstream 21120 24872772 ~ 24952098 (+)
LOC110531794 LOC106577572 coding downstream 101174 24952826 ~ 24971460 (+)
G785410 NA non-coding upstream 19549 24827884 ~ 24828109 (+)
G785404 NA non-coding upstream 22818 24824617 ~ 24824840 (+)
G785198 LOC100380740 non-coding upstream 29654 24773763 ~ 24818004 (+)
G785262 NA non-coding upstream 37396 24809714 ~ 24810262 (+)
G785196 LOC100380740 non-coding upstream 75855 24705450 ~ 24771803 (+)
G785433 NA non-coding downstream 46507 24898159 ~ 25000005 (+)
G785638 NA non-coding downstream 193772 25045424 ~ 25061013 (+)
G785695 NA non-coding downstream 286191 25137843 ~ 25143127 (+)
G785793 NA non-coding downstream 307660 25159312 ~ 25164194 (+)
G785825 NA non-coding downstream 330798 25182450 ~ 25182725 (+)
G785138 NA other upstream 264781 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 760332 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1008544 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1043521 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 1068157 23765275 ~ 23780276 (+)
LOC110531825 LOC106577732 other downstream 676021 25525371 ~ 25532692 (+)
G786091 NA other downstream 693579 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 861345 25712997 ~ 25742909 (+)
G786218 NA other downstream 1106432 25874527 ~ 25958867 (+)

Expression


Co-expression Network