LOC110531800 (LOC106577573)


Basic Information

Item Value
gene id LOC110531800
gene name LOC106577573
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24869091 ~ 24871866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615229.2
CGAGGCTCACATTTCAAATCTGTTTTCCCTGTAATCTCTGGCCTAACTCGTTGCGTTTCAGCTAAAAGCTTTTTGTTGTGGCATtggagccagagagccagagaggacatgagagacaGGGAATGGTTAAGAGAGCTGGGGGAGGAAGAAAGAGGGTCCTCCTAGTTGCCAGGGCAACTTGACATCACAGTGACGATTTCCTCCATTTAAAAGCTTTTAACCGGATCCCTCTCCTGCCCTAGGCCCCATTTTGAGTCCTCTTTCAGCTAAACTCGGGGGGAAAAGCACAGGCAAAGCAGAGCGGTGTGTGGCTGTTTGCAACCACATTCCACTGACAACTGCTAGACTGCACCTTAGAGCAGAAAAGGGCTTTCAAACTAAGCCGTTTTGGGGGCCTATTTTGTTTACCAAACCAAAACAAGAATAGAGTACTTTCGAGTGGGCTTTCAAAATGGCCACCGAGGACAGTTTCAGTTACCTCTTCTTGGGCCACAGCGAGAAGCACAGAAGGGCCCGAAACTGGACTGATGCGGAGATGAAGGGGCTCCTGTACGTCTGGGAACAGAACGTCGCCGAGCTGAAGAAATGCAAGAGGAATACCAAGATCTATGAGAAAATGGCCCAGAGGTTCTTCGAGCTCACGGGAGAACAGCGCCACCGGGAGGAGATCAAGATGAAAATCACCAATATGTCTTTCCAGTACAGGCAAGTGAAAATGAAGTGCACGACCAATGGGAGTGGAGGTACCCCGGACTGGCCGTACTACCAAGCCATAGAGAAGATCCTCACCAAGACTGTCGATAATGGGACTATGAACCCATTTGAGCTCCAGTCTTCGGGCCCCTCCACCTCCACGGAGGCCTCGATCTCCCATGCGGAGGGCCTCCCCATGGGCGTCCTTCCGGAGTACACAGGCTCCTCTGATGAGATGGAATTTAGGGAGGACCTGGGTGGATCGGAGAGCTCTGGCAGTCTGCATTCCGGGCTTCCCTGTACTGATTCCCACCCGGCACCGGGCAAGAGGAAAAAAGTACACCAGCACCTCTCCCTGAAGCGGTGGAAGCTGAAGGTGATGGAGGCAATGCTGCAGGAGCAGCGGAAGGTGAGCCGGGCGGTGGAGGAGACGTGCCGCGAGGTGCGCCGTGTCATGAACCAGCAAAACTTCCTCCAGGTGCAGAGCCTACAGCTCCAGGAGCGCATGATGAACCTGCTGGAGAAGATGATTCAGCCACCCGCTGCCCCCATACCCACCTGGGGTTCTGCTGCCCAGCCAGGGGTCAAAGAGCCAGGGCAGGGGTGAAGGGTCAAGTGTGAGGGATCAAGGGGGGTGGGAGTGGTCAATATATGGCTATTCTAGAAAATAAATTCTATATATGACAAATTGCTAAAAGGCTATGCTTGCTGATCGCTATGGCTATGCTAGAAAGGACCTGCTATATGGCACTTTTTAACAACTGATTGATAGCGAATACTGACTGTAATTGTCAATCTCAATCTCACCCTTATCCCTAACCTGGACACTTAACccccagagagagggaaaagCTTATCAACTTGCTCAACAGTACTGAGAGAATATAGATGGTTTCGTCCTTTCTAGAATGGCCATCTTGTAGTttctgtgagagagtgagaggccaGGGGTGAGGGTTTCGGGGCTGTACGGTTGAGGATAGTTCTTAGACATGTTCCACCATTCAGATTTGAAAGATATCTACAAGCTAGGAAACTACGTGTTCACATCGACAAAAGACAATGTATGTCCACAAATTCTATATCTTGATGACAAAAGGCATGGGCATTTGATGTTGTATCAATTATGTTTTAATGTCTGTCCTGCTATggtttttgcatatcccaactagCATAGCCTACTTGTTTGAAATGTATGActgaaataaaaacaaatgt

Function

NR:

description
myb/SANT-like DNA-binding domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615229.2 True 1911 mRNA 0.50 3 24869091 24871866

Neighbor

gene id symbol gene type direction distance location
dtx4a LOC103369650 coding upstream 2407 24852146 ~ 24866684 (+)
trnaa-cgc NA coding upstream 17212 24851808 ~ 24851879 (+)
si:ch211-119e14.1 LOC106577735 coding upstream 17439 24847658 ~ 24851652 (+)
LOC110531795 LOC106577574 coding upstream 23109 24825299 ~ 24845982 (+)
LOC118966018 NA coding upstream 68937 24795653 ~ 24800154 (+)
LOC110531788 LOC106577570 coding downstream 906 24872772 ~ 24952098 (+)
LOC110531794 LOC106577572 coding downstream 80960 24952826 ~ 24971460 (+)
LOC110532977 LOC106577569 coding downstream 99885 24971751 ~ 25017445 (+)
trnaa-ugc-31 NA coding downstream 154705 25026571 ~ 25026641 (+)
LOC110531806 LOC106577568 coding downstream 231987 25103853 ~ 25108225 (+)
G785410 NA non-coding upstream 40982 24827884 ~ 24828109 (+)
G785404 NA non-coding upstream 44251 24824617 ~ 24824840 (+)
G785198 LOC100380740 non-coding upstream 51087 24773763 ~ 24818004 (+)
G785262 NA non-coding upstream 58829 24809714 ~ 24810262 (+)
G785196 LOC100380740 non-coding upstream 97288 24705450 ~ 24771803 (+)
G785433 NA non-coding downstream 26293 24898159 ~ 25000005 (+)
G785638 NA non-coding downstream 173558 25045424 ~ 25061013 (+)
G785695 NA non-coding downstream 265977 25137843 ~ 25143127 (+)
G785793 NA non-coding downstream 287446 25159312 ~ 25164194 (+)
G785825 NA non-coding downstream 310584 25182450 ~ 25182725 (+)
G785138 NA other upstream 286214 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 781765 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1029977 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1064954 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 1089590 23765275 ~ 23780276 (+)
LOC110531825 LOC106577732 other downstream 655807 25525371 ~ 25532692 (+)
G786091 NA other downstream 673365 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 841131 25712997 ~ 25742909 (+)
G786218 NA other downstream 1086218 25874527 ~ 25958867 (+)

Expression


Co-expression Network