XLOC_026638 (svilc)


Basic Information

Item Value
gene id XLOC_026638
gene name svilc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39112898 ~ 39171968 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051894
ATGGAAAATGTAAGCCAGGAGTCCAGAGCTGAACGGATCGCTCGCTACAAAGCAGAGAGGCGGAGAGAGCTGGCAGAACGTTACGGCAGCCAAGAAGAGGAGCTTCCATCAAAGTGGTCTAAAAGAGAGAGGGAGGGTCGTGGCATTCGTGACTCTAGCTTTGCGGATACGTCTGTTTCTGGTGGAATAAATGGAGGGACAGGGAGGAATGGACGAGCAACACTGGAAGAGAGGACTGCAAAGATTTCCAATGGATATAAGATGGATACCAGTGGAGAAAACACAAAGAACAGGGCATGTGTGATGGGCTTGTCTGGTACGGTGGATGGAGAAAGCCCTCCAGACTCAACCTCTGATACACCGCTGTTACACACTCATGTTTCAGTAGGCCAGCTGAAGAACGCTCTTCTACAGCAAAACAGCAGTCCAGCTGCATCTGATAGAGTAGTGGCTGATGGTGATGTGGTGGCCTTGACTCTTGATCTGGCGGGTCAGCCTGAGGGAAATCGCCGTCGTGCCCGTCGGTACCTGCCAGGAGATCCTGCTGCGAGCCGCAAAAACAGTGAACGCTTCCGTACGCAACCCATTACAGCCTTTGAGATACAGGAGAGCTGCGGAACGGTGGATGGTGAAAATCAGGACACTTCACAAATGGATGCAAAGACGGATGACAGAGCCAAGATGAGCGTAGCTGCCAAGATGTCTCTGTTTAAAGAATTGGAGAAGACAGCTTCACCTGAGGCATCTTTGTTCCTTAAACCTCGCTCCAGTAAAAGTTTCCATGAACGCAGATCTCGCCGTAACAACGATCCTCGGGCACtcactcagccaatcacatttgaAGAAACCATGATGGCAGCAAGTCCTCAGCCAGGTGAAGCAGGTGAGGCAGAGCCTGAGGTGGAGGATGATGCTGGCACTAAACTCTCTATGAGTGAGAAACTGGCTCTCTTCAATAAACTCTCTCAGCCCATATTGGGTGCTGTTGGGAGTCCTGTGAGAGATGGCAGCCCTCATGAGGCCACTGAGAGACGCAGACAGAAGGGCACTCGCTATCGCACACAGCCCATCACAGTGGATGAAGTCAATCTGCTTCAAAAAGGGCCTGTGCAGCTCCCTCGTTTTCATCTGGCTCCTCACCTCTCTGACCGCCAGCAGGCCGAGTCCACCAACCTGAAACCCAGTGAAGTGCGTCTCTCCGGGCTGAGCTCTTCCTCCTCTGAACTCTCATCTCCCCATCTTAAGAATACAACGAACACCAATTCCCAGAATGCAGTGCATCCCATTAAAGGCATCCTGAAAAAGAGCTCCTCTGAGGGAGTGGTCTGGAGGAGTGACAGAGAGAGGAAAGACCTGAATGGACACAACCTGGAGCAGAATGGCAAAGAGAGGGGAGAGACAGAAGTGAAGGAGGAGAGGAGTTTGTCATCGGTGGATCATTCTCCGGGTCATCTCTCCGGCGCTCCCTGGAGGCAGAGGACGAGGAAGGAAACATCCTTCGGCAGAACACGGAGATCTGCTCCAAACCCTGAGGAACATTTGTATCTTTCAGAGGTTCTGCAGATCACAGAACAGAGTGGAGATTCGGCCATCGCTGACAGACTGACAAACTCAAGAACAAAGGAAGAAGAAGAGAAGCAAGGTGCTACAGCAAAGTGCAATATCAGTAGAAGCAGTGAGCCACAGGATGAATCTGTCAGTGCAGTTGAGTCTATACCACAAACTCAGTGCTGGGAGCCTGTGTTTTCATCTGTATACTCACGCTCAAACTCCACACCTCAGTATGTGATGTGTTTCAATGAGAGAAGTCTTTCTTATGAAGCTCAGGAGGTTTCAAAAACAACTCAAGCCCAACCACATGTGACCGGGAGAGTCAAGGAGGCAAGCTGTGAGGAAGAAGAGTCTCCCAAACTCATTTTCACAGAAACACAAACCGTTTGCACCACGGAAGTGCAGGAGAGTCAGATGTTTGGCACTGAGATGGATAAAGAGGTGATGCCAGCTGAACCCTGCTCAGTGCCAGCATGTCCCACCACCGGAGGAGACACAGAGTCAGACCTGAGTGCTCTCTGCCAGACCAACACACCAATTTTGAGCTCAGCTGTAGCTGAACACAGGCGATCAGTTCGGCCGTCACGCAGGACTCAGGGTTCCCGGAATCCATTACGTGCTCTTGCTGCTCGAGAAGACATCCAGCAGGATTTCATGCAGCCTGAGGAAAACAGCGAAATGGAGAATAATACAGCTATGAAAAATTCAAACTGCACCCCAgctgatgtcacttcctctggAAAACTGAGCAAACCCACTGTGCCATACCACAAACTCATGCTCATCCAGGTTAAAGGATGGAGACAGGTGCAGGTGCGGATGGTGGAGCCGGTGTCTCACTCTCTTAACAGCGGTGACTGCTTTCTGCTGGTCACACAATCACACTGCTTCCTCTGGACCGGCAAACTCTCCAACACCATTGAGAGAGAAAAGGCATCTGAAATGGCCTCACTGATTGTGACCCAAAGGGATTTGGGTTGCCAGGCGACCGGTGTTGTTCACCTGGATGAAGGCGTAAACACAGACAGCCAGCAGGCAGCTGAGTTCTGGAAGCTTCTCGGGGGACAGACCCCGTATAAAGGTTCAGACAGTGTTGAAGATGATGAGCTCTATGAGAAAGCCATATCAGAGTCAAACTGTATTTACAGGCTGCAGGGGGACAGACTGAGTCCTCATGAGCAGGCCTGGGCCTCCGTCCCGCACCACAGTCTACTCAACCCTACTCAGACTCTGCTGTTTGACTTCGGCAGTGAGCTCTATTTGTGGCATGGGAAAGACGTCGGCCCAAGCGAAAGAAAGCTGGCCCTTCAGCTGGCTCAGCAGGTTTGGGACGGAGCGTATGATTATAGCAACTGCAGGATCAATCCTCTGGATCCCTCTGGTGGCAGTGCCCACATTCACAAACAGGGTATTGGACGGCCAGACTGGGCACTTTTTGGCCGTGTGTTCGACCAAAATGAGACGATACTCTTCAAAGAGAAGTTTGCAAACTCATTTGAGCAGACAAGCATGAACAAAAACCACATCGTTCCTTCAATACAAGAGGAGGTGAAGACCGCTTCCAGTCTCCATCAAGCATCAGCGGAGCAGTGGTCCTGTGATGTTAGAGCTCTTTTTGGAGGGGTGTGTCTCTCAGGAGTGTCTCAGGTCATTCTGGATGGTGTGGATGTGCGAAGGGGACGGGACTTGGTCACTTTCAGTGATGGTCGGCAGGCAGATCTAAGCACTGTTTCTGTGAAAGTGTGGCTGATTTCAGAGGGTGGGGATTGTGAAGTTGCTCCAGAGAGCCTGGGACAGTTGAACGAGGGCAACACATACGCTATACGCTGGACGTACAGCCTTACAGCCTCAGGGGATGAGAGTGCGCTGGCTCAGGAAAGATCTGCTGTTTTCATCTGGAAGGGGCGGCACTCTAATATAAGTGGGCGGGACCTGTCACCAGCACTGACCAATGAGTGTAGCGCTCAGGTGTTTATAACAGAAGGGGAGGAGCCAGCCTGTTTCCTGCAGCTGTTCCAGGGAGGAATGGTCATTTATAGACAACAACCAAGCATAGACACAGAAGCCTGGCGTCTGTTCTGTGTGAGGGGTGATGTGCCGATAGAGGGCAGCCTGTTGGAGGTTCAGTGCTCCTGCTCCAGTCTGAGATCTCGTGGCTCATTGGTTCTGTTGAACAGCCAACAGGGCACCATCTACCTGTGGCATGGGTGTAAAGCCCATAGTAAAGCCCGTCAGGTGGCCAAGCACACCGTCCAGCGCCTCACACAAACGTGCCCATCTGAGCTGAGTCTGAAAACTGGCAGCTTTATGAACATCCAAGAAGTGGAGGAGGGGAAGGAGCCTTCCGAATACTGGAACGCTATTGGACAACAGGACAGGAAGTCATATGACTGCATGCTACAAGATCCTGGTAAATTTAACTTTACGCCCCGCCTTTTTCACCTGAGTGCCCAATCAGGATCTTTTGAAGGACTGGAGCTCGTTAGCCCCTGCCGTGCAAATGGTGTCATCACAGCAATGCCCTTCCTTCAAGATAAGCTATACACTGTGCCACAACCAGCTTTGTTCCTGCTGGATAACTATCTGGAGGTGTATTTATGGCAAAGTTGTGAAACTTCGGCTCCACAGCGCCCTCTTTGGGACAAAGAGAAGAAGTGCGCGATGGAGACAGCCTTACAGTACTGCAAAGAGAGAAATCCCAGGCGGCCTCCGATTGCATATCTTATTGATGAAGGGGCAGAGCCTCTCACCTTTACTAATATATTTCCCTCGTGGGAGATGACACAGGGAGAAGAgGACTGTACGGTGCGTAAAAAGCTGACTTTGGTCCAGGATGCTCTGGCTGCCCTCAATAAGACCCAGTTTCCCCTTCAGGATCTACTAAAGAGACCTTTACCTGAGGGAGTGGATCCTCAACACCTGGAGAACTACCTGTCTCAGCACGATTTTAAGGCTGCTTTGGGAATGACGTGGAATGACTACAACTCTCTATCGGATTTACAAAAAATGGACCTGAAGAAAAGCAAAGGACTTTACTTAGCATGAGACTCAACACCAGCAATGATGTGTTTGTAAGATGAAGTGTTCCTGATGGCGGTCGTGTCGTGTGTACAGTGTAACTGTGAGTGTGAGTCGGCTTCCTTTCAACCTGATGCTTTTTGTAATGCCTAATGTCCAGCCAAAAGCTTTCTAAAGTTTCAAAACAGTTTACTCAGACTTTGAGAAATAGCTGCCGTTTTTCTTTCTTCCTCCCCTTCCTCCATCGCAGCTGTTTTTTGTCTTGctttctttatctctctctctctctctgtcggCCTCCTCTATACATTAAACAGCACATGTGAATAGAG
>TCONS_00051895
CATAGCTCAGGATGGGGTCGAGCTCTGAATCTCATCTTGGCCTGTAAGTCCATGAGTTTGCTCCGCTCTCAAGCCTTGTGAGTGCCATGTCCTCGGGGAGATGATCAGGATGAAACACAAACATATTATAAGAACCTGCTGTTTTTTGAGCTTCTGATTAATCACTTTCAGTTGTGACTCCACCCTTGTTTTCCAAAACGATTACCTGCCAGGAATTATTCTGCATAATTCAGACACCCTAAGTGACAAAACAGGAGTTAGACAAAATGGAAAATGTAAGCCAGGAGTCCAGAGCTGAACGGATCGCTCGCTACAAAGCAGAGAGGCGGAGAGAGCTGGCAGAACGTTACGGCAGCCAAGAAGAGGAGCTTCCATCAAAGTGGTCTAAAAGAGAGAGGGAGGGTCGTGGCATTCGTGACTCTAGCTTTGCGGATACGTCTGTTTCTGGTGGAATAAATGGAGGGACAGGGAGGAATGGACGAGCAACACTGGAAGAGAGGACTGCAAAGATTTCCAATGGATATAAGATGGATACCAGTGGAGAAAACACAAAGAACAGAACGGTGGATGGTGAAAATCAGGACACTTCACAAATGGATGCAAAGACGGATGACAGAGCCAAGATGAGCGTAGCTGCCAAGATGTCTCTGTTTAAAGAATTGGAGAAGACAGCTTCACCTGAGGCATCTTTGTTCCTTAAACCTCGCTCCAGTAAAAGTTTCCATGAACGCAGATCTCGCCGTAACAACGATCCTCGGGCACtcactcagccaatcacatttgaAGAAACCATGATGGCAGCAAGTCCTCAGCCAGGTGAAGCAGGTGAGGC

Function

symbol description
svilc Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in anterior macula; hair cell; inner ear; posterior crista; and posterior macula. Human ortholog(s) of this gene implicated in myofibrillar myopathy 10. Orthologous to human SVIL (supervillin).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-237 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in anterior macula; hair cell; inner ear; posterior crista; and posterior macula. Human ortholog(s) of this gene implicated in myofibrillar myopathy 10. Orthologous to human SVIL (supervillin).

Ensembl:

ensembl_id ENSDARG00000017036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051894 False 4901 mRNA 0.50 29 39112898 39152478
TCONS_00051895 True 832 mRNA 0.47 6 39135617 39171968

Neighbor

gene id symbol gene type direction distance location
XLOC_026636 NA coding downstream 137200 38971435 ~ 38975698 (-)
XLOC_026635 si:dkey-106c17.2 coding downstream 194181 38912557 ~ 38918717 (-)
XLOC_026634 znf281a coding downstream 328947 38762891 ~ 38783951 (-)
XLOC_026633 si:ch211-198m17.1 coding downstream 367300 38705425 ~ 38745598 (-)
XLOC_026632 mpp3a coding downstream 419978 38647987 ~ 38692920 (-)
XLOC_026639 cdk21 coding upstream 3892 39175860 ~ 39180048 (-)
XLOC_026640 retsat coding upstream 9419 39181387 ~ 39190317 (-)
XLOC_026641 RETSAT coding upstream 19847 39191815 ~ 39198113 (-)
XLOC_026642 si:ch211-232p21.6 coding upstream 28114 39200082 ~ 39208714 (-)
XLOC_026643 nmt1a coding upstream 66128 39238096 ~ 39259919 (-)
XLOC_026631 BX936420.1 non-coding downstream 583482 38525979 ~ 38529416 (-)
XLOC_026626 NA non-coding downstream 1463509 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1528091 37581522 ~ 37584807 (-)
XLOC_026621 CT573704.2 non-coding downstream 2037085 37075698 ~ 37075813 (-)
XLOC_026646 CU464118.1 non-coding upstream 199905 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 389816 39561784 ~ 39563301 (-)
XLOC_026651 BX322795.1 non-coding upstream 477477 39649445 ~ 39649562 (-)
XLOC_026653 BX649356.2 non-coding upstream 773897 39945865 ~ 39951527 (-)
XLOC_026654 BX649356.3 non-coding upstream 785390 39957358 ~ 39957474 (-)

Expression


Co-expression Network