LOC110531794 (LOC106577572)


Basic Information

Item Value
gene id LOC110531794
gene name LOC106577572
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24952826 ~ 24971460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987659.1
TTATGCATGGTTACCAAGCTATGAGAGGAGGGATCCGAAACCATCACCCGCCACCTCCTCCAAAAAGTTACTTTCCATTACATCAAAGATCAGCACTTTCAAGATCTTGCATGTTTAATCGTGGGCGTCTCGTAAGGGAAATTAGTTGCAATTCGATGTTTTGCGTAGAGTGATGGCCATAATCAAAAAGTAGGTCTAATGACGCATTTGATTTACTCAATAGAGTTTGCAGGGAACAGGCTCGCTCTTGCAGCATATCCCACGTTCTCCATGACCAAAAGCAGGCTGAGTTCTCTCGAATTGACAGATAAAACGTGACATTTATCTGACGGACCTGATTCAAGAAATTAACTTCAAATAATTTTGCGCACGATAACAGAGACTACATAACCCAAAATATTATGATGCTATACTTTGTGTTACTTTTCCTACCGTATGTCCTCAGTGTACGAACGCGAATGGTACTCCCAAGATATGAAACGTTTAGTGCAAGAAATGTGAACAGAAATAGTCATAAAGTCCTTACAGTAGAGGGGAAAGAATGTAAATTCCCATTCCGTCATGGAGGAAGCATTCACCATCACTGTATCAACATCAGCTTCTCCAGCTCTTGGTGTTCTCTGACGCACAACTTTGATCGGGACTTTCTCTGGGGATACTGTGCACCTGCGAACACTCAACCCATTGTGTTCGTCCACTCATCACGCAGATTCACAGACCCTTGTCAGGTGAATCCATGTCAAAATGGCGGCATCTGCACTCTGGTCCCCCGCAGACGCTCCTTCGAGTGCTCCTGTCCAGAGAGCTTCACTGGGAGGCACTGTGATCAGAGGAAGTGCTATGAAACCATACACCTGAGATATTACGACATTGGAAAATCATGGGGAAGGATCTACCTTCGTAACGTGGAACGGTGCACATGTGTGGACGGGGAGATCTCCTGTGAGAGAGTCCGCTATACTGTCTGCAGTGAGAACCCCTGTGAGAACGATGGTACGTGCCGACTCATCACAGCCACCAGGGAGGAGGTGTGTGCCTGCAGGCCTGGCTACAGTGGACCCTACTGTAGCATTGCTTCTTTGCTGAGAGTGGTTCCATTGCCACAGCTGCCATCGCCAGCTAATGTCCTTCCTGACACCAACCAAACCGACCACACCAAGCCAGACAAGAAGCCTGTGTGCGGAAAGAGGAACAATAAGAGGATATCGGTGGCCAGGGGTCGTATCCTGGGTGGCAGCTCTGCCCTGCCCGGTACCCATCCCTGGATGGCAGCCCTCTACATAGGAGATGACATCTTCTGTGCGGGTACCCTGGTCTCGTCCTGCTGGGTGGTCTCTGCTGCCCACTGCTTCTTCCGCAGTCCCCTTGTGTCAAAGATTCGTGTGATTCTGGGTCAGCATAAGTTCAACGTTACGACTCCTGACACCAAAACCTTTGGAGTGGAGAAGTACATCTTTCCAGAGCGTTTCTCTGTTTTCAATCCAACTCTCCATGACATTGTtcttgtgaaactgaaaaaacaaGATGGCCGCTGTGTAAAAAAGAGCCCCTTTATACGGCCAATCTGCCTGCCCAATAAAGACATGACCTTCCCGGACCAATACTGCTGTCAGATTACTGGCTGGGGCCACATGCATGAGAAGGCAAATAAATACACCAACCTGCAGGAGGCCGGGGTGAGGATTGTCCCGTTTGAGAGGTGTAACCTGCCTGAAGTCTACGGCAACCATGTGACCTCCAACATGGTCTGTGCCGGGACCAACCGATGTGTGGATGCCTGCCAGGGTGACTCAGGAGGCCCCCTGGCTTGTGTGAAGGATGATGTCAGCTTCCTGTATGGAGTTATCAGCTGGGGCGATGGCTGTGGAAAGACTGGGAAGCCTGGCGTCTACACCAAAGTCGTTAACTACGTGAACTGGATCAACACAATTATCAAGCGCAAGCCCAAGCCTAAATAAATGGACATTACAGCTGGTATTTTTTATATGTACTATGTGTACATACTGTGGAAGAATAGTGATATTTACACAACTgtgaaataaatattattttgtgactgaataaacattttaaatgtt

Function

NR:

description
hepatocyte growth factor activator-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987659.1 True 2078 mRNA 0.48 12 24952826 24971460

Neighbor

gene id symbol gene type direction distance location
LOC110531788 LOC106577570 coding upstream 728 24872772 ~ 24952098 (+)
LOC110531800 LOC106577573 coding upstream 80960 24869091 ~ 24871866 (+)
dtx4a LOC103369650 coding upstream 86142 24852146 ~ 24866684 (+)
trnaa-cgc NA coding upstream 100947 24851808 ~ 24851879 (+)
si:ch211-119e14.1 LOC106577735 coding upstream 101174 24847658 ~ 24851652 (+)
LOC110532977 LOC106577569 coding downstream 291 24971751 ~ 25017445 (+)
trnaa-ugc-31 NA coding downstream 55111 25026571 ~ 25026641 (+)
LOC110531806 LOC106577568 coding downstream 132393 25103853 ~ 25108225 (+)
LOC110531807 hmx1 coding downstream 223321 25194781 ~ 25197585 (+)
LOC118966019 LOC106577563 coding downstream 343902 25315362 ~ 25324106 (+)
G785410 NA non-coding upstream 124717 24827884 ~ 24828109 (+)
G785404 NA non-coding upstream 127986 24824617 ~ 24824840 (+)
G785198 LOC100380740 non-coding upstream 134822 24773763 ~ 24818004 (+)
G785262 NA non-coding upstream 142564 24809714 ~ 24810262 (+)
G785196 LOC100380740 non-coding upstream 181023 24705450 ~ 24771803 (+)
G785638 NA non-coding downstream 73964 25045424 ~ 25061013 (+)
G785695 NA non-coding downstream 166383 25137843 ~ 25143127 (+)
G785793 NA non-coding downstream 187852 25159312 ~ 25164194 (+)
G785825 NA non-coding downstream 210990 25182450 ~ 25182725 (+)
G785851 NA non-coding downstream 231628 25203088 ~ 25203310 (+)
G785138 NA other upstream 369949 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 865500 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1113712 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1148689 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 556213 25525371 ~ 25532692 (+)
G786091 NA other downstream 573771 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 741537 25712997 ~ 25742909 (+)
G786218 NA other downstream 986624 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1441652 26413112 ~ 26413532 (+)

Expression


Co-expression Network