LOC110531806 (LOC106577568)


Basic Information

Item Value
gene id LOC110531806
gene name LOC106577568
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25103853 ~ 25108225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615236.2
CTGACTGAGACAGCTTTCTGATGTCGCGGAGCACTGAGAGGGAGGCAGCAGCCGATGGAGAAGGGTTGTCTGTCATGCTATAACAGTGTGCATGTACAAGGCAAGGTGGCATCTTCGTTTAGTCAATTAGCCAGATATATGTTTGGTGATTTTCTCTTTGAAGAAGTCTTATTTGGCATCTAATTCAGGAGATGGCATTTAATCCATTCCTTCACCATTGTGTGCATTTTCATTTTGGCAATGTCAATACTGCCTATTTATCTTGGACCTGATATTTTCTGATGGACTCTATATGCATAAAATGACTACTTCTCCTTGAATCGACTATTCTGGAATAACACTAACCACATAGACGGGATGGGATCGTTTAATTCAAGCGGAGTTGACGCGTTCCCAGTTTTcaatttaaattcctcatcagAAAGTCCATATACTTTGGCTACTATAGCGAGTCTTGCAGCACTTGTAAGTTGTCTTATTTTGTTTACAGTGGTCGGTAACGTCCTGGTTGTAATTGCGGTGTTAACAAGCCGGGCACTGAAAGCACCCCAGAACCTGTTTTTGGTTTCCTTAGCCACAGCAGACATTCTGGTCGCCACTTTGGTGATGCCTTTTTCTCTGGCAAACGAACTTATGGGCTATTGGTATTTCGGGAAAGTTTGGTGCGGAATTTACCTTGCTTTAGATGTCTTATTTTGCACTTCGTCCATTGTCCATCTGTGTGCAATCAGTTTGGACCGTTACTGGTCCGTTACGCAAGCTGTTGAATACAATCTCAAACGGACTCCTAAGCGAGTGAAATGTATTATCGTCATTGTATGGCTTATATCTGCGATGATATCTTCTCCTCCGTTAatatcaatagacaagaacaatgATAACTCTCAGTACCCAGGATGTGAGCTGAACAATGACACTTGGTACATCCTTTCCTCTAGCATTGCGTCATTCTTTGCTCCTTGCCTAATCATGATATTAGTATATATTAGAATATACCAAGTGGCCAAGACAAGGACCAGGGGCATGTCGGAGAAAAAACATGGTCCAGGTGAACCTACAATGACTGAGAATGGGTTAAGCAAAGCCACCTCGTGCAAAATCAACGGGGACAAAGAGAACGGGCACTGGCAGTGCCCTTCCACGCCCACCAGCATGAGGACAACAGGGGTCCAAGACGAGGTGGACCTGGAGGAGAGCTCCTCCTCAGAGGGCAAAGGTCACCCCAAACCTCAAGACCTGAACCATAAGAGGGCCAAGAGAGCCAGCCGGAAGAACAGCGCCATCTCCAAACACTCCAGCCGAATCTCCAGAGCCAGCAACAAATCCATGGACCTGTTCGCTtccaggaggaagaagaggaggaggagctctGCGTCCAGGAAAAAGGTATCCCAGGCCAGGGAGAAGAGATTCACCTTTGTGCTGGCGGTGGTCATGGGAGTGTTTGTGGTGTGCTGGTTCCCATTCTTCTTCAGCTACTGCCTGCACGGAGTGTGCGGGGACCCCTGTAAGATCCCCGATCCCCTCTTTAAGTTCTTCTTCTGGATCGGTTACTGTAACAGCTCCCTCAACCCCGCCATCTACACTATCTTCAACCAGGATTTCCGGCGCGCCTTTCAGAAAATCCTTTGCAAGTCTTGGAAAAAATCCTTCTAGATATGTAATAACAAGAGGGACAAGCCAGGACTAAATATCCCTTGAGGTGACAATGTCAATAGCATAAACGTATGAAATTTACCATGGGAATATCAATGTGAAAgcagacattttttttaatttggcCCATGGAACAATGCAATGTGCATACTGTACTTACAGTGGACAGACACATTGTCATGCTGTAACTCAATTGAGTCAGAGCATAATACTGAACTACGTCTTCATATCCCCTCACAGGCAACTCTCTAGTGCTTTTAACCTACTTGTTTCTCTTACCGGCCTTCATATTTTCCATCCACGTTTAGTGTGTGCTTAGTGGTTCCCAGAATTAGATGTACTGAAGTGTGTCGCAAGGCTTTAACTCAATGTCATGTTAGATATCCAGTACTCCTGAGTCCTTTACAAACAAAGTGACAGCAGGTAGCATTTCCAGGTTGATCATGCTAATGCAAAAAACACAGGGGAGCTAGCCTGGCGCATCTGCAGTTTAATCCAAAATACTGCATGTTTTCATGGGTAATGCTTTCCCTACGGATTACAAGTGGTTGAGGTGTTGAGGGGTGACTATACCAGGGctgtccaaccctgttcctggataaCTACCCcttgctttgttttttttgctccaagcccagttgtaactaacctgattcattttttttttaccaacaagctaattattagaatcaggtgtgctacaGTAGATTAGGGTTGAAGCGAAAATCTACatgatggtagctctccaggtacagggttggagaaccctgctctatacattttaaaaatatggGCTACGGTTGGACCTGTTATTAATACATAATAGTAAGAAAGCCTCTTTATTTTTCACCTTGGATGCTGACTAATAAATATTTAAGAATAAAACATAGTGTTTATTTTAATACACTACCTCCCTTGTGGACTGTTTCTGTGTAATTATTTAGCATACTTAGTATTTTGTTTTGCAAGTGGTGCAGTTTCGTATGCTTAAAGTAGTGGGCTGTCATGCAAAATAAACGCTGAAGAAATATTATGTAAGCTCTATTGTAATGTTGGAGTTCTGACATATACACAGTGGAGCACTCTGACAAGGATGGACATGTGCTTTCGCTTGAGTGATTAAGGGATTTGGAGATAGTCTGCACTGCCACCACCAATCACTGTCCAAAGTGCACTCTCTAAGATGTCAGGCAAACCATTTGTCCCTCAGATGGTATTTCAAACAGCATATTTACGTTTTAAACATGTCAAaggaacagctcaaggacaaCCATGCATTTACACAGTCATTTTTATTTATAGACAATCATTTGGGCATTGTCAAATTATTTAAAATTCATGTCAAATATAGTTAGGGAATGCTAAAGGGTAAATTGTTAAAATAGCCCTGCAGAAGCTTCCTGGAAAAATATAATCTGTAGCTACTTAGCTGCCTAAATATTTTCTTCAATGGGAAGCAATTCCATTGTGGCAATCCTGATCAAGACCATCTATCACGTCCGAAATCCCACCCATCCCACTGACTGGCTTGGAGGTGTTCTCACCATGTCTGCGTACCGATTATCCACCCTTCTCCCAAAGTGTGCCCTTGCACACTTCCAGTCATACAGTAGATCTACAATCCATTAGAGGGAGTGTGCGAGGGCACAATTTGGGAGAAGTGTGGAGAATTGGGATGCTACCTATGTTTCCCTTTATCAATCCATAACATTCAGATTAGTATCCTTTGACAAAGGGAATGAAACAAGAAAGTATTCAAGAGTATTGTGACACAGCCTGTTTGTTTTACTAAGTGGCCCCAAAGATCCCTGGTAAGTTTATTGGCAACACTTTCTGAATTTAACTGTGAAATTGATCAAAGCTGCAGTGATGGGTTCAACCAAATGATTTGTCCTCCTGGCAAAGACTGACCATGTCAGTACCagggtgtacagtatgtgacctTTTAGCACAAAATGGTTTGGTGTCACTTGTGGCTGAGAGGAGATAAGCCAATATTCCCCACCGCCTCTTTCATCAGCGAGGTGAAACTGAGTCCAACTAACTCTTGTTGTGGATCTTTACTCCATGTTAAACTGCTTCTGTTTTTGGGGTGCCAATGTAAATGCTCTTTGAAATGGTCTACATCTTTTGTGTTTGTTCCAGTTACCATATGCTGCTGATATAGTGTAATCGTACATGTCAACATGTGTAGACATAGACGTTTCAAGGGTTGCTTTGTTTATTATCAGTAAAACAAAACAGTTACATACAGTAGATGATGTTGATATACTGTAGGCATTTTAAAGGAATTATGTTAGCCCTTTAACATAATTTCCTTTGTAGATTTTCCATTTTGATCAGTCTAGCAGTGTGAGTGCAGTGGACACATGGACTTCCTGTGTAAAGGATGGGTTTCCCCACATAACCACGAGGGAAGCTACTAGGCAACATGCCCATCTATGATGCAGAGGACTGTTACAAGGGAGTACAACCAACAGCATGCACCCAGTTCAGTTCCTGTTTGATCTCTAATGCATTGGAAAACCTGCTTTGTCATTGCATCTCACTCTGTCAAATACAAAAGTGCCATTTAATGTTCCACTGGTGTCAGAGCTCAGAGTAAACAGTTATTCAATCGCTTGCTTTATAAAGGTCAGACAGATTTTTATTTCAACGCCACCCTGCAGGGTTCCTTTGGCAATTTATTGGCATATTTGGGTAGTACTAACATTGTG

Function

NR:

description
alpha-2 adrenergic receptor-like

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG:

id description
K04140 ADRA2C; adrenergic receptor alpha-2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615236.2 True 4373 mRNA 0.42 1 25103853 25108225

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-31 NA coding upstream 77212 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 86408 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 132393 24952826 ~ 24971460 (+)
LOC110531788 LOC106577570 coding upstream 151755 24872772 ~ 24952098 (+)
LOC110531800 LOC106577573 coding upstream 231987 24869091 ~ 24871866 (+)
LOC110531807 hmx1 coding downstream 86556 25194781 ~ 25197585 (+)
LOC118966019 LOC106577563 coding downstream 207137 25315362 ~ 25324106 (+)
LOC110531811 LOC106577563 coding downstream 215774 25323999 ~ 25339758 (+)
LOC110531816 NA coding downstream 259140 25367365 ~ 25369664 (+)
LOC110533008 NA coding downstream 288054 25396279 ~ 25397954 (+)
G785638 NA non-coding upstream 42840 25045424 ~ 25061013 (+)
G785433 NA non-coding upstream 103848 24898159 ~ 25000005 (+)
G785410 NA non-coding upstream 275744 24827884 ~ 24828109 (+)
G785404 NA non-coding upstream 279013 24824617 ~ 24824840 (+)
G785198 LOC100380740 non-coding upstream 285849 24773763 ~ 24818004 (+)
G785695 NA non-coding downstream 29618 25137843 ~ 25143127 (+)
G785793 NA non-coding downstream 51087 25159312 ~ 25164194 (+)
G785825 NA non-coding downstream 74225 25182450 ~ 25182725 (+)
G785851 NA non-coding downstream 94863 25203088 ~ 25203310 (+)
G785886 NA non-coding downstream 119592 25227817 ~ 25228103 (+)
G785138 NA other upstream 520976 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1016527 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1264739 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1299716 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 419448 25525371 ~ 25532692 (+)
G786091 NA other downstream 437006 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 604772 25712997 ~ 25742909 (+)
G786218 NA other downstream 849859 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1304887 26413112 ~ 26413532 (+)

Expression


Co-expression Network