LOC118966019 (LOC106577563)


Basic Information

Item Value
gene id LOC118966019
gene name LOC106577563
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25315362 ~ 25324106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987668.1
AGGTGGCTAGGCAATTGTTGCACAGGTGGAAATTGAAAAGGGGTGGAGTGAAAATACTAGGAAGAGGCGGATAGAGCAATGTGGACAGTTTGCCTAGTGCTGTGGTGACCCACAGGGTCATGCTGATGGAACAGGACACTCAGTGGCTGTACCACCTCCTGGCCGAGGTCCAGTTGGAGAGGTTTTACCTGCGTGTCCGGGACAGCCTCAACATCACCCGCGTAGAGCATTTCGCCTACGTTAAAGAGTCTGACCTCGAACAGATTGGTATCAGCAAACCAGGACAGAGAAGATTATGGGAGGCTGTGAAAAACTTCAAGATCAGCGTGAGGCCCAAATCGTGGATGGCCAAGGCAAGACCTTTacatggggctcccgagtggcgcagtggtctcagGCACTGCGTctcaccctggttcgaatccaggttgtatcacaaccggctgtaattgggagtcctatagggcagagcacaattggcccagtgtcgtctgggtttggctggtgtaggccgtcattgtaaataagaatttgatcttaactgacttgcctagttaaagaaaggttaaaCATCTCTCAAGTCCCTCCAGAATGCAATTTACTATTATATACCATTTGTTACAAGGTAGTGGTGAGTTCTTTGAAATAAGTACCAGACATTACTGATTGACACAACATAATAATTGGAATGCTCACCTGTCACTCATGTTGATCTGTTGGTCCCCCAGGCTATCAGTGGGTGTGGTCCGGAGGGGGGTGATCAATGGGGCAGCGTGGGGTCGGGCCAGGAGAAAGGG
>XM_036987667.1
AAAAACACTGAATGCTGTTGCTAAAGTTTTCAACACCAGTTGAAGAGAGGATATTTTGCTATGAGATTAAACCGACaaacttaaaaaaaaattacaaatatgATAATTTATTTACGAAATTAAGAAAAAAAGTATGGCACGTGATGTGGATTATCCGTAGGCCTAGGTCTAACGATCCTATTGGGAATACCTTGATTTGTTGTAGCATATCCGAAAGCTGGGTTCATAAATAAGCAAGATCGTGGCCCTGGTGGACCGTGGGTCATTTTATTGACGTTTGCCTAGTGCTGTGGTGACCCACAGGGTCATGCTGATGGAACAGGACACTCAGTGGCTGTACCACCTCCTGGCCGAGGTCCAGTTGGAGAGGTTTTACCTGCGTGTCCGGGACAGCCTCAACATCACCCGCGTAGAGCATTTCGCCTACGTTAAAGAGTCTGACCTCGAACAGATTGGTATCAGCAAACCAGGACAGAGAAGATTATGGGAGGCTGTGAAAAACTTCAAGATCAGCGTGAGGCCCAAATCGTGGATGGCCAAGGCAAGACCTTTacatggggctcccgagtggcgcagtggtctcagGCACTGCGTctcaccctggttcgaatccaggttgtatcacaaccggctgtaattgggagtcctatagggcagagcacaattggcccagtgtcgtctgggtttggctggtgtaggccgtcattgtaaataagaatttgatcttaactgacttgcctagttaaagaaaggttaaaCATCTCTCAAGTCCCTCCAGAATGCAATTTACTATTATATACCATTTGTTACAAGGTAGTGGTGAGTTCTTTGAAATAAGTACCAGACATTACTGATTGACACAACATAATAATTGGAATGCTCACCTGTCACTCATGTTGATCTGTTGGTCCCCCAGGCTATCAGTGGGTGTGGTCCGGAGGGGGGTGATCAATGGGGCAGCGTGGGGTCGGGCCAGGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987668.1 False 797 mRNA 0.50 3 25315362 25324106
XM_036987667.1 True 980 mRNA 0.46 3 25315459 25324101

Neighbor

gene id symbol gene type direction distance location
LOC110531807 hmx1 coding upstream 117777 25194781 ~ 25197585 (+)
LOC110531806 LOC106577568 coding upstream 207137 25103853 ~ 25108225 (+)
trnaa-ugc-31 NA coding upstream 288721 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 297917 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 343902 24952826 ~ 24971460 (+)
LOC110531816 NA coding downstream 43259 25367365 ~ 25369664 (+)
LOC110533008 NA coding downstream 72173 25396279 ~ 25397954 (+)
LOC110531817 LOC106577558 coding downstream 75403 25399509 ~ 25410386 (+)
LOC110531818 LOC106577557 coding downstream 87665 25411771 ~ 25418108 (+)
LOC110531819 LOC106577555 coding downstream 102292 25426398 ~ 25433817 (+)
G785950 trmt44 non-coding upstream 20268 25294064 ~ 25295094 (+)
G785949 NA non-coding upstream 22543 25292533 ~ 25292819 (+)
G785940 NA non-coding upstream 31329 25283766 ~ 25284033 (+)
G785934 NA non-coding upstream 39671 25275405 ~ 25275691 (+)
G785930 NA non-coding upstream 45528 25269424 ~ 25269834 (+)
LOC110531811 LOC106577563 non-coding downstream 12576 25323999 ~ 25339758 (+)
G786068 NA non-coding downstream 162306 25486412 ~ 25486645 (+)
G786089 NA non-coding downstream 213418 25537524 ~ 25543652 (+)
LOC118966182 NA non-coding downstream 223066 25547105 ~ 25547900 (+)
LOC110531788 LOC106577570 other upstream 363266 24872772 ~ 24952098 (+)
G785138 NA other upstream 732485 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1228036 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1476248 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1511225 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 203567 25525371 ~ 25532692 (+)
G786091 NA other downstream 221125 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 388891 25712997 ~ 25742909 (+)
G786218 NA other downstream 633978 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1089006 26413112 ~ 26413532 (+)

Expression


Co-expression Network