LOC110531811 (LOC106577563)


Basic Information

Item Value
gene id LOC110531811
gene name LOC106577563
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25323999 ~ 25339758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615242.2
TGCTCACCTGTCACTCATGTTGATCTGTTGGTCCCCCAGGCTATCAGTGGGTGTGGTCCGGAGGGGGGTGATCAATGGGGCAGCGTGGGGTCGGGCCAGGAGAAAGGGGGGCGGGCCCTCACCTGTCTGATCCAAGACGATGAGCTGACTCTGGGGGAGAAGCTGGGAACGGGCTCCTTCGGCgtggtgaagagaggagagtggcAGACCCCCACTGGGAGAGTGCTGCCGGTGGCAGTGAAGTCTCTGAAAAGTAGTctttccagacagacagacaccatgacAGACTTTCTCCAGGAGGTGACCACCATGCAGTCTCTTGACCACCCCAACATCATCCGCCTCTACGGAGTGGTGCTCACACAGCCCCTCAAGATGGTGACAGAGTTGGCCTGTCTGGGGTCCCTGTATGACATGCTGCGCTCTCGCCAGCACGAGTACCCCCTGGCACGCCTCTGGCTCTTCGCCACCCAGATAGCAGCGGGTATGGAGTACCTGGAGGGTCGCAGGTTCATCCATAGGGACCTGGCTGCCCGGAACGTTCTGCTGGCCTCCAGGGAGATGGTGAAGATTGGGGACTTTGGTCTGATGAGGGGCCTGAGCCAGGAGACAGACCACTACGTGATGACGGCCCACAGACGTATCCCCTTTGCCTGGTGTGCCCCAGAGAGTCTGCGTGTGGGCTCTTTCACCCACTCCTCTGATGTGTGGATGTTTGGGGTCATTCTCTGGGAGATGTTCACCTACTGTGAGGAGCCTTGGCGGGGGCTATCTGGCAGACAGatCCTCTGGCGTGTGGAGCTGGAGGGACAGCGTATGGAGAGACCCCCTGACTGTCCTCAGGAACTCTACTCTGTGATGAGAAAGTGTTGGGCCTGCACCCCCTCCAACCGACCCACCTTCTCCCAGCTTACCACCCTGGTCGCAGAGgCTCAGCCTTTGGAGGTGTGTGCTGTGCGGGACTTTGTGGAACCTGGAAAACTCGCTCTCCTGTCCAACGACCTAGTGACCATCATAGACCATAGTCTGGAGCTGTGTGAGTGGAAGGGCCAGAACCAAAGGACCTTGATAGTGGGCTGGTTCCCCCCGAGCCtggctgctccctccctctccgcccCCAGCAGCGCCCCTGCTCTTCCCACCACAGCCCCCGTCGCTGCATCGAGCCTCATCCCGCCCCCCCTGAAGGGCAGTCTGCAGCACACGGGGCAGAGTGAGACCCACCCCGACCGTAACTGGGGCACGCCGGAATGCCTCGACGAGAGAGTAAACTGGAGAAGAAGCCCagcaaatagagagagagagggcggctCCAATTTACAGAAAATGTCAGGTATGACCAGGAGTCTGGAGTCTGTCCTGAGTGGTCCCCAGAGCAGGACCTTAGGAGGGGTCAAGGTGGACCCCCGTCGTGGACCCCTCCCCAACGCCATGGTTGCCCGCAGCGTTGTGGTGCAGCAGGGTCCCCATCGGTTCAGCGAGGCCAGCATCAACCCCCCACCTCGACCGCTCCCGCCCAACCTCAAACGCGCCAAGATTCCCCAGGTGGCCTTGTTCCGAGATCGAAGGCCTGTAAATCCATCCCCAGGTTCCTTGTGGCCTCCACAACCTCAAAAGAATCCTCAGCAGCAGATGCTACAGCCACCCCAGCCCCAGCTGCAGCAGACCATGGGGGGCAGCGACCTGGGCAAAATGGCCCACATGGCATGGTCCAAACCAGCACTGGATGACTATGGGGACAAGGAGAGGAATCAAGAAAAGGAGTGGGTGGtgagggaacgagagagggagaggaacccGTCTCAAGTACAACACACCAGGGAAGCCTTCATAGCCCAGGTCACGGAAGCAGTGCATGGAGTGACCAATGAGGAGGTTCGGAACGCACTTCACTGCAATGAATGGAACCCTATAAGGGCCCAGCAACAACTCAAGATGGAGCAGCTGCACTCTCTGAGCCTGTGTTCTCGTGACGACTGCCTAAGGATCCTGTCCCGCTATCAGTGGGATCTACAGCTGGCCAGCCGCTACCTGTTCAGAATGGTAtgggaggagaggactggagcaggagaaagggagaggagggacggagagagagaggctgctgccatgGAGAGACGAGGAGTATGAGAGgtgtggggatggagggatactGGAAACAGAGGACAATAAAGATTTACGAAATTGAAGAGGGACTGAGGAGCTATGAGGAATTTAAGAGATGGGATGGTTGATTAAAAAGGAATGGAATATATATGAAGTGAACCATAAAGACATTACAGTCCTCCAAAATGCAATTTTTATCCCTTTTTACAATTCTGTTTAGTCTTTTTTGATGACGTGACAGACAGCCACGCCCTCTCTGTTCTCAAAAGTAGTTGTGTATCATGATGAATTTGTAGAGTGCcgtacaaaagtattcagaccccttggatttattcataatttatggtgttacaaagtgggattcaaattgaTTGAAGTGTTATTTTTTTGTCAAACATTTACACCAAATACTCTGTCAAAGGGATacaaaaattctaacattttaaAAACTAAAATATAGTAATTGCATTAAGTATTCAGGTCCTTGACTCAATACATGTTACAAACACCTTTTGGCGTCGCTTACAtctgtgagtcttcttggatacGTCTATAAGAGCTTCATATACccggattgtgcaatatttgtccattattcatttaaaaattattcaagctctgtcaagatgtcggtgatcatggctagacagcaatgttgaagtattgccatagatttttaagcagatttaagtcaaaactaacttggccactcatgtacattcactgtcttcttggtaagcagctctagtgtagatttggccttgtgttttttatgttattatcctgctgaaaagtgaatgcCCATGGCAACACagcagtttcattcctgtcctgcagctcagttcaggaTGACTATTTTTtatgtctgggtggtttaatacataatccacagcataaCAATTCACTTGACCATGATTTAAAGAgctattcaatgtctgatttgttattgttgcCCACTTTCATTATCCTTCTTTGATTCTTTCGAAAAGCTTCTTAGTTGAATCTGTACtcgaaattcaatacttgactttACAGATGTGTGTACGGGGGACAGAGAAAGAGTTAGTAAATAAACAAATCCATGTAACTTAggtgatttgttaagccacatTTACTCCTGAAGATGCTGAATACGTATGCAACAACTCTATTTTAGTTATGAATATTTGATTTAtcatgaaaaaatatattttacttccTCATTTAAGagaattttgtgtagattgttgacaaagaaattacaattaaatccatttcaatcccactttaCCCCAATAAAATGAAGAAATTCAAGGGCTATGaacacttttgcaaggcactgtattgtatTAGCATTGATTATATTTGTTGAATAAAATGTTGATACAAATTGTGCATGGCGCTAGTGATGTGTACATGTGACTCATGCCCCTCAATTTACACCCAGTCAAGAGAGTTGGGATGTTGTAACAATCAAAAGATGATCTACAGAGTGATGTAATTTCCTTTCAGAGGAAGTGTTTGTCAATTCTCTGCTTTGACTTCCTTTACCACTTTAGTTGAGGTGAATTGTGAGCTTCTCCTTATGCTGTCTAAAACTACAGCGTTACAGGAGCTGGTCACATAGGGCTGGAGAATCCATAGTACTAGGGAAGGACATGAGTTTATTTTAACCTGCACCTCAGCATGCgtccagcggggggggggggaatgagagCACTGCTCCCTTTGTGGTCCCGGCCTTTTTCCTGTCTACTACAGGGCTTGGATACATTTCAGGCCCTCCTGGCACATTGCCACTACCGTTTTAGGAATGGTTAAGAGTTATGGAATGAGACTAAGGGCCATAATGTAATTAGGCCCATGACTTGGAAAAAGGtggatggagactggagagagacgaAAAGCCTGCCACAGGATCTGCTTCTCCAATTATTAACAGGTCTGTCATTTTGCTGGGCTTCATAagcacctctctccatcccaaccACCCTCAGTGGCCACTGGCCTAGTGGAGTCTGTCACTTGCAAAACCTAGTTCAGGATTCAAACCAGGACGGCGGAAGATGTGTTCATTTCCGAGCCGACCTCTGCGTTCATTTTTAATGTGATCTCCGCAAATGCGGAAACATTACCTTTAAAAAGATGCATAGCCAGGAAGAGGTGATCGGATTGAATCACAGACATAAGACTCAATTCAATCCGTAACACTGACATGCTGTAGCGGGAATGAAATGagtcatttccgattgagccggcATCAGCGGCGTTGACCGTCAGTGCAGGAACATTGGCTTTAACTGTACTTTGCGCTGCAGCAAAGCTCTCcagcgatacggattgaatcgagACCCGAGTGTAAAAATACAGGTCACGCAGAACGAAAAAAAAAAGGTACAAAACTGCTTTATTTACCACAACTGTTTGACCCcagggctggattcaatctgtaGTGCCGAAGATACGCATGGTTGAAATTCAAAAAGTCATtttcgattgagccgacatatgcagcgtttactgcAAATGCAGAAATCTTGcatttaaatttcaatcacgctatAATGCTGATCTTCAGCACTACTGATTGAAACCAGAACCTTATTGCCTAATACAACACTTTCCCTAAACAGTGCAACGAGTCATCATACTCACCCCATGAACAAAATGACACTGTATTTAACACCAAAGGAAACAGTTTACCAAGAAATTGGCCCCAACTCTTCACTATGTCCCTTAAGTCAGGTAAGCACATTCCTTCATGATGAAGGCGTGCCCTGCAGGTAAATGATTCTGGGacaaagttgttgttttttaagtgGATGAATGTAAATGCACAATGCGTCGCATCAATTATGTCACTTAATGATGATAGCTCCTTGAATCTCTGACAATCACTGCTGCAAAAAAAAAAGATGTCGACTCAGATGGCAgccacctcactctctcccacttCCCCAGTGGATATAGTTACTATCAGAAGTAGTAACATTAAAATGATCGACAGCGTGAATGAATGGTGCTTGTCAAGGAACAACTGAGGCCTGGAAAAatttacacagtgtacaaaacattaggaccaccttcctaatattggaGTCGTACCCCCTTTTgcgctcagaacagcctcagttcgtcagggcatggactccacaagcgttccacagggatgccgactccaatgcttcccacagttgtgtcaaggtgGCGgagcattcttgatacacacgggaaactgttgagcatgaagaAGTCAGCAGcggtgcagttcttgacacaaaccggtttgcctggcacctgctaccataccccattcaaaaggcTTTTGTctcgcccattcaccctctgaatggcacaaatacacagtctcaaggcttaaaaatcctactttaactcgtctcctccccttcatctacactgattggagtggatttgaCAGGTGACAACAGTAAGTAATCATAATTTGACACTAAAATAAAGAATCTAGAATGTAATACTGCAACTGAAGCAGTTTGGTATGATAAAATACTTGCCATGGCAGTGACTAAAAAGAAAATACTGAAAAA
>TU895158
TTAAGTATTCAGGTCCTTGACTCAATACATGTTACAAACACCTTTTGGCGTCGCTTACAtctgtgagtcttcttggatacGTCTATAAGAGCTTCATATACccggattgtgcaatatttgtccattattcatttaaaaattattcaagctctgtcaagatgtcggtgatcatggctagacagcaatgttgaagtattgccatagatttttaagcagatttaagtcaaaactaacttggccactcatgtacattcactgtcttcttggtaagcagctctagtgtagatttggccttgtgttttttatgttattatcctgctgaaaagtgaatgcCCATGGCAACACagcagtttcattcctgtcctgcagctcagttcaggaTGACTATTTTTtatgtctgggtggtttaatacataatccacagcataaCAATTCACTTGACCATGATTTAAAGAgctattcaatgtctgatttgttattgttgcCCACTTTCATTATCCTTCTTTGATTCTTTCGAAAAGCTTCTTAGTTGAATCTGTACtcgaaattcaatacttgactttACAGATGTGTGTACGGGGGACAGAGAAAGAGTTAGTAAATAAACAAATCCATGTAACTTAggtgatttgttaagccacatTTACTCCTGAAGATGCTGAATACGTATGCAACAACTCTATTTTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615242.2 False 5651 mRNA 0.48 12 25323999 25339758
TU895158 True 687 lncRNA 0.37 1 25336682 25337368

Neighbor

gene id symbol gene type direction distance location
LOC110531807 hmx1 coding upstream 126414 25194781 ~ 25197585 (+)
LOC110531806 LOC106577568 coding upstream 215774 25103853 ~ 25108225 (+)
trnaa-ugc-31 NA coding upstream 297358 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 306554 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 352539 24952826 ~ 24971460 (+)
LOC110531816 NA coding downstream 27607 25367365 ~ 25369664 (+)
LOC110533008 NA coding downstream 56521 25396279 ~ 25397954 (+)
LOC110531817 LOC106577558 coding downstream 59751 25399509 ~ 25410386 (+)
LOC110531818 LOC106577557 coding downstream 72013 25411771 ~ 25418108 (+)
LOC110531819 LOC106577555 coding downstream 86640 25426398 ~ 25433817 (+)
G786005 NA non-coding upstream 2870 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 3318 25320393 ~ 25320681 (+)
G785950 trmt44 non-coding upstream 28905 25294064 ~ 25295094 (+)
G785949 NA non-coding upstream 31180 25292533 ~ 25292819 (+)
G785940 NA non-coding upstream 39966 25283766 ~ 25284033 (+)
G786068 NA non-coding downstream 146654 25486412 ~ 25486645 (+)
G786089 NA non-coding downstream 197766 25537524 ~ 25543652 (+)
LOC118966182 NA non-coding downstream 207414 25547105 ~ 25547900 (+)
G786109 LOC106577552 non-coding downstream 234437 25574195 ~ 25577299 (+)
LOC110531788 LOC106577570 other upstream 371903 24872772 ~ 24952098 (+)
G785138 NA other upstream 741122 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1236673 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1484885 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1519862 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 187915 25525371 ~ 25532692 (+)
G786091 NA other downstream 205473 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 373239 25712997 ~ 25742909 (+)
G786218 NA other downstream 618326 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1073354 26413112 ~ 26413532 (+)
LOC118966019 LOC106577563 coding upstream 12576 25315362 ~ 25324106 (+)

Expression


Co-expression Network