LOC110531816


Basic Information

Item Value
gene id LOC110531816
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25367365 ~ 25369664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474762.2
TCCTCAGGATGTGAATTGGCTGGACCAAGAGTTCTTGGTCCACACCTGTCTGAGCTCTCTGACCTCACCTTCCTTTCCCCACTGGGAGACAACCCCGGGACTGGGAAGAATGCCGTTCCAAGTCTGCCACCTTCAACGCCCCTCGGTAACACATCCCTGACCCCATGGAACATATCTCCACCCATCATCACGGCAAACCCAAGGACAAGAGAGACAATCGAGGAGTGGGCGATAATGTAACATTGAGACCAGGAGTAGCCACTGATGAAGAAGGCAACAATTCCTCTGGATTCTATTGGAAGCACCCTTACATCCAACCAGCAGAGCAGAAAGGTGAGAATACAGAACAGGGAGGACTGACCATCCTTTACTGGTGAACTGGCTTATTTGTATCCATGTGTTGCAGGATGAACCAAAAGACTACTGGGAATATTTTACTGAATTATCTCCACTCATCCAATGCTGACTTTACAGTTCCAATCAGAATTCATTGTGACTGTTAGTTGGTTGTTTTGTAAAGATGAATTCCCACAAATAGGTTTGAAAGCATgttaatatttatttatatttaagaTATTTAACCTGCTTAGATGTTAGGGACTGAACACCCTCTAGTGGTTGTGTATGTACAACGACAAACATGTGTGCCTaacatcaataaaatgcattccTTATATTTACCGAAGTCACATATATTGGGGAAAAACAAGAGAACAGGTGATCCCCAAAAAAGATTTTATTTTTCAAGCTACAGTTAAAGAAAAACAATACCAGAGGCCGAAAATATAACATCTGCTAGgctttcttttcctctcttttcACTTTCAAATATGTACAGTTATCGAAGAACAGGGTATATACAGAGAATCGAAGGGAAGGGTGGTGGACAGAGTGCATTTGCTTTTTGGGGACTAAACATGACTCTTCCACCAACAAAAAAAGCAAGGTAAAACCAACCAACATAAAAGGACCTGCCACGACACTGGTGATATCAAATTACTTTTCTGTACAATACAAACAGTCTACTTTGTTTCACGAATGAGAATTATGAGGGTGAGGGATTTGTATGTTCTCTGATTTGGAAGCAAATCTCAACTAGCGTTTTCTGAACTTTTAAACAAAAATAATGATAACatgaaagaaatacaaaatatatattttacaaccATTCATGCAAAAAGATGTTCAAGCCACTTCTACAAGGTGAAGTGGCTCCAACTTTTTCCGTCACGACAGTTTACAACAATCACATCAATCTCCCAAACCAGAAGTCTCTAATGAAAAGAACGCACAAATgtgaataaaaacaaaaaaaagcacAGAACAAGCATTGGAGGAATTTGAAGTCTGTCGCCAAGTCAAACCGCAACCAAAGGGTAGTCATGGTATTCCATTGTCATGCAGAGGGAACTCAAAGTAATCAAGTGGTGATGTAGCAGATGTTGACCCACTCCTCAAAGCTTATACTGCACcagttgacaaaaaaaatgtattttaaaaaaatatatatttactggTTATGGGCTGGATCTAAAAACTTTACAGCACAGCCCTTAGTTTAAAAGTTAGTGTATTAGCAATTGCCAAAAGCAATTAACTTTCAAATGAAATAACCACAAAAAAAGGGGGTGTTTGGTTTGGGCTTGTGCTTGTTTTAGTGCACTGTTGTAGCACAAGTTAGTGCATATTTCTATGGAATAGATTGAACATTTCAATTTTGATATGATATTGTTTCAATCAGAAAACCTCTGATGAGAGAAATCCTATAGGGGCTTAACACTGTGGCAAGCGGTACTGAGTGTAATAGACAGAAACTAATAAACAAATGCCAAAATTGAAAGCTTACATAAGAAAAAAGTAGCAAAAAAATAAAGAGAGACCCTTTTTAGACCTAAAAATGAGAAACTTATggacaaaaacaaacatgtttgtTTTCTTTTCAGATAATGAAGGGGGTTGTGCCTCTGCCATGGTGTGGCAGTCGCATTGAACACTGGTTACAGAGGGTCTGACAAAAGTGGATGTACCATTATAAAATACTAGCTTTTTCCTTTGAACGTTGACAGAAAAGCAACCCATCAAATGtcctaaataaataattatctataCCTTGTCATGCACCTTATGCTATGACCTTAATGTAAAAGCCAGGAAATGGATCTCTGTATGGTTGCCTTAGCATttcaatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474762.2 True 2191 mRNA 0.38 2 25367365 25369664

Neighbor

gene id symbol gene type direction distance location
LOC110531811 LOC106577563 coding upstream 27607 25323999 ~ 25339758 (+)
LOC118966019 LOC106577563 coding upstream 43259 25315362 ~ 25324106 (+)
LOC110531807 hmx1 coding upstream 169780 25194781 ~ 25197585 (+)
LOC110531806 LOC106577568 coding upstream 259140 25103853 ~ 25108225 (+)
trnaa-ugc-31 NA coding upstream 340724 25026571 ~ 25026641 (+)
LOC110533008 NA coding downstream 26615 25396279 ~ 25397954 (+)
LOC110531817 LOC106577558 coding downstream 29845 25399509 ~ 25410386 (+)
LOC110531818 LOC106577557 coding downstream 42107 25411771 ~ 25418108 (+)
LOC110531819 LOC106577555 coding downstream 56734 25426398 ~ 25433817 (+)
LOC110531823 ybx2a coding downstream 76489 25446153 ~ 25451114 (+)
G786005 NA non-coding upstream 46236 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 46684 25320393 ~ 25320681 (+)
G785950 trmt44 non-coding upstream 72271 25294064 ~ 25295094 (+)
G785949 NA non-coding upstream 74546 25292533 ~ 25292819 (+)
G786068 NA non-coding downstream 116748 25486412 ~ 25486645 (+)
G786089 NA non-coding downstream 167860 25537524 ~ 25543652 (+)
LOC118966182 NA non-coding downstream 177508 25547105 ~ 25547900 (+)
G786109 LOC106577552 non-coding downstream 204531 25574195 ~ 25577299 (+)
LOC110531788 LOC106577570 other upstream 415269 24872772 ~ 24952098 (+)
G785138 NA other upstream 784488 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1280039 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1528251 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1563228 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 158009 25525371 ~ 25532692 (+)
G786091 NA other downstream 175567 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 343333 25712997 ~ 25742909 (+)
G786218 NA other downstream 588420 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1043448 26413112 ~ 26413532 (+)

Expression


Co-expression Network