LOC110531819 (LOC106577555)


Basic Information

Item Value
gene id LOC110531819
gene name LOC106577555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25426398 ~ 25433817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615252.2
AGGTCTGGGCCACGCGCTAATTAGAAACTCCCACGTTTCCCCTGAAGTCAAAACAGGAAGCTCAATTTCACACCGGAAGTGTATTGGTTGGGGTTAACCAtgatttaattttttaaaatttacaATACAGACAAAAAGTCCGTGTTTTTCATAGAAAAACGCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGAGTGACCGTTTCACTCTCCTCGCTCCACAGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA
>XM_021615255.2
AGGTCTGGGCCACGCGCTAATTAGAAACTCCCACGTTTCCCCTGAAGTCAAAACAGGAAGCTCAATTTCACACCGGAAGTGTATTGGTTGGGGTTAACCAtgatttaattttttaaaatttacaATACAGACAAAAAGTCCGTGTTTTTCATAGAAAAACGCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA
>XM_021615254.2
CGCGCTAATTAGAAACTCCCACGTTTCCCCTGAAGTCAAAACAGGAAGCTCAATTTCACACCGGAAGTGTATTGGTTGGGGTTAACCAtgatttaattttttaaaatttacaATACAGACAAAAAGTCCGTGTTTTTCATAGAAAAACGCATGTAGCAACATATTCTCTCCATTCTGCTGCATTCAGCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGAGTGACCGTTTCACTCTCCTCGCTCCACAGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA
>XM_036987673.1
CTAGCATAGCCAGATTAAacgcaacgttagctagctgatgCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGAGTGACCGTTTCACTCTCCTCGCTCCACAGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGCTCTCATAGCCAAAGCCAGAGGAAAACCAGTGTGAATCTTGAGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTC
>XM_036987671.1
caacgttagctagctgatgCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGAGTGACCGTTTCACTCTCCTCGCTCCACAGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA
>XM_036987672.1
caacgttagctagctgatgCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA

Function

NR:

description
G protein pathway suppressor 2-like isoform X2

GO: NA

KEGG:

id description
K15307 GPS2; G protein pathway suppressor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615252.2 False 1560 mRNA 0.50 10 25426398 25433817
XM_021615255.2 False 1530 mRNA 0.50 10 25426398 25433817
XM_021615254.2 False 1586 mRNA 0.50 10 25426410 25433817
XM_036987673.1 False 1478 mRNA 0.51 11 25426688 25433814
XM_036987671.1 False 1418 mRNA 0.51 10 25426709 25433817
XM_036987672.1 True 1388 mRNA 0.51 10 25426709 25433817

Neighbor

gene id symbol gene type direction distance location
LOC110531818 LOC106577557 coding upstream 8290 25411771 ~ 25418108 (+)
LOC110531817 LOC106577558 coding upstream 16012 25399509 ~ 25410386 (+)
LOC110533008 NA coding upstream 28444 25396279 ~ 25397954 (+)
LOC110531816 NA coding upstream 56734 25367365 ~ 25369664 (+)
LOC110531811 LOC106577563 coding upstream 86640 25323999 ~ 25339758 (+)
LOC110531823 ybx2a coding downstream 12336 25446153 ~ 25451114 (+)
LOC110531824 LOC106577554 coding downstream 74727 25508544 ~ 25523517 (+)
LOC110531825 LOC106577732 coding downstream 91554 25525371 ~ 25532692 (+)
LOC118936682 NA coding downstream 98613 25532430 ~ 25536173 (+)
LOC118966181 NA coding downstream 107164 25540981 ~ 25542036 (+)
G786005 NA non-coding upstream 105269 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 105717 25320393 ~ 25320681 (+)
G785950 trmt44 non-coding upstream 131304 25294064 ~ 25295094 (+)
G786068 NA non-coding downstream 52595 25486412 ~ 25486645 (+)
G786089 NA non-coding downstream 103707 25537524 ~ 25543652 (+)
LOC118966182 NA non-coding downstream 113355 25547105 ~ 25547900 (+)
G786109 LOC106577552 non-coding downstream 140378 25574195 ~ 25577299 (+)
G786133 NA non-coding downstream 186260 25620077 ~ 25620295 (+)
LOC110531788 LOC106577570 other upstream 474302 24872772 ~ 24952098 (+)
G785138 NA other upstream 843521 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1339072 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1587284 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1622261 23802151 ~ 23804811 (+)
G786091 NA other downstream 111414 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 279180 25712997 ~ 25742909 (+)
G786218 NA other downstream 524267 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 979295 26413112 ~ 26413532 (+)

Expression


Co-expression Network