XLOC_002664 (smc5)


Basic Information

Item Value
gene id XLOC_002664
gene name smc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15617741 ~ 15644974 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004952
ATCCAGAAAAATATCATGTGACCACTGTCGTCCAATCACACAGCGACTTACCGACAACACAGGCGCGAAACGAAAGTGAATAGACTGTGCTGAACATCAACCAGAGTGACCGACCAGAAATGGAGCAGCCGCATAAGAGAAAGCGAAAAAGCCACGAATTGTCCAACTCACAGCCCTCCGATCGTGAACCTGCAACGTCCACCAGTGCAAATGCCCGAGAAGGAGATTTCATGGAGGGCGCAATCGTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCTGAAGTTTTCCCCGGACCCAAACTGAACATGATCGTTGGAGCCAACGGCACAGGGAAGTCCAGTATCGTGTGTGCCATCTGTCTGGGCCTGGCTGGAAAAACATCTGTCCTGGGCCGAGGAGACAAGGTTGGTCTGTATGTGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGAATGTGTGTAAGGAAAAAGGAAACTTCCTAGAGAAGGCCAGACAGAGGAATGAAAGAAACAAGCTGGATGTGGAGCGCTACTACATGAAGAAGCGGCATTTAGACAGGATCCAGATGCTTGAGAAGAAGAAACCCTGGGTGgaGTATGAGACGGCACGTAAAGAGCTGGAGGGGGTGAAGAAGGAAAGAGATGAAATGAAAAGGAAGCTTAGGTTCCTGAAGGAAGCTCAGGAGCCGCTGCTCAGAAAGATCCGCTCTGTGGAGAGTGAGCTGCAGCCCATCGAGCAGCAGATGAAGGAGATGACCAACCGTATCAAAGAGGCAACGCAGAAATGTAAGCAGAAACACGACCAGCTTGAACTGAAGAATAAAGAGGTTGATGACATCAAACAGGACATGAGTCTAAAGCAGACGGAGGAGGCGGACAGGCAGAAGCGGATTGGACACACGCAACTGATGATCAGAGATCTGCAAAAGGAGCTTCAGAACATGGGCACCATTGAGGACGTTACTCCTCAGATTGAGGCTATCAATGCAGAGCTGAGGAACATTCAGGAAGAAAGAGCCAGACTGGAGAGTGAGAGTCTGGACCTGCGCAGAGATAAAGATGAAATCACTGGAGAATTTGCGCGTTTGCAGAATCGCCTGAGGAGTCTGGATGACATGATGAAGATTAAAGAGGAGAAATTGCGCAGCCGCTTTCGTGACACATACACAGCCCTTGAGTGGCTGAGGAAAAATCGTGATCGTTATGAAGGAGTTGTCCATGAGCCCATGATGCTGGTGATAAATGTTCGTGATGCTCGGCATGCAAAATACATTGAGACTCACATTTCTGTCAATGACTTGAGAGCTTTCGTCTTCCAGAGACAGGATGATAACGACAAATTTATGAATGAGatgagagATACGCAGAGGCTGCGAGTTAACAGCATCATCGCTCCTACAGAGTCTTGCTCTAAACGACCACCGTCACGACCCATCGAGACCCTCAAgcCTTACGGCTTCATCTCGTACTTGCGAGAGATGTTTGATGCTCCTGAGGAGGTTATGAGTTATTTATGCCATCAGTACAGAGTTAACGATGTACCAATAGGAACAGAGAAGACCAAGGGCATGATTGAATCGGTGATCAAAGACCTTCAGTTGAGAACGATTTACACAGCGGAGGAGAGGTATAATGTGAAGAAGTCTGCTTACTCCAATAATGTGGTCTCCAGTAACTCGGCTCTGCGACCACCACAGTTCTTGACTACCACCATAGATGTAGAGGAGAGGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAGCAGGAGATTAAGAACTTGGAGAAGGAGCTGGACGATAAGACTAATGAACTGACAACCTATAGAAGAAACATTGCAGAGGCTAAAGAGCGCTGGCTGAATCCGCTGAAGAAGCTGGTGGAGCTGATCAATGTGCGCTTCAGTGATTTCTTTCAGTCTATGCAGTGTGCAGGAGAGGTGGATCTGCACTCAGAGAATGAGGAGGAGTACGATAAATATGGCATCCGCATCCAGGTGCAGTTCCGCAGAAACACACGGATGCACGAGCTCACGCCACACCATCAGAGTGGAGGAGAGCGCAGtgtcaccaccatgctttacCTCATGTCCCTGCAGGAGCTCAACCGCTGCCCCTTCAGAGTGGTGGACGAGATCAATCagGGAATGGATCCTGTCAACGAGAGACGCGTGTTTGACATTGTTGTGAGGGCGGCCTGTGGTGTGAACACGTCTCAGTATTTCTTCATCACACCTAAGctTCTCCAGAACCTGCAGTACGCCGAGCAGATGACCATCCTCTGTGTGCACAACGGCCCTCAAATGCTGCCGCCAAACAAGTGGAATGAAAAGGCTTTCATCCAGCGAGCCAGACGCAGAAACCGGACCTGAAGTTCCTCAACGCCTTCATCTGCCTGAAAATAGTAACCGTTTCTAGTTCACAtgtaatcaatcaataaatgcaaatgtttatttaaaaaaaaggtatttttccAAGTACAAGTGTTTGTTCTCAATAAAGGAATGTTAGGTTCAGATAAACCCTCAAGTTCATGACAGAATGATATGCTTAATGGAGCATTTGATATCCAGCATGCTGGTCAAACTATTAAAGCATCAACAGTTTTTAACCTAATAAAAGTGTTTCATTTAAATGGTACCTATTTTACtgcttttacaagatgtaagatcaGCATTTGGTGTCTCCAGATTGTGTCTGTGAAGCTTCAGCTAAAAATacccatcaaattatttattatagcctccagaatctgctcaTTTTGGTGTCTTAAGTATggtgttgctgtttttgttgcctgtgactttaaatgcaaatgagctgcttctccccgcccaccgttcccatgtgtctgcttctcatcatgcattacgtcagataaacagcagtcagtgacagagatgGATGCAGATGAAGCTtgaatacagctcattagtcaataatatcaggtaagtttatttgatgtatttgcggTGAattttattcaagcctttctga
>TCONS_00004951
ATCCAGAAAAATATCATGTGACCACTGTCGTCCAATCACACAGCGACTTACCGACAACACAGGCGCGAAACGAAAGTGAATAGACTGTGCTGAACATCAACCAGAGTGACCGACCAGAAATGGAGCAGCCGCATAAGAGAAAGCGAAAAAGCCACGAATTGTCCAACTCACAGCCCTCCGATCGTGAACCTGCAACGTCCACCAGTGCAAATGCCCGAGAAGGAGATTTCATGGAGGGCGCAATCGTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCTGAAGTTTTCCCCGGACCCAAACTGAACATGATCGTTGGAGCCAACGGCACAGGGAAGTCCAGTATCGTGTGTGCCATCTGTCTGGGCCTGGCTGGAAAAACATCTGTCCTGGGCCGAGGAGACAAGGTTGGTCTGTATGTGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGGAAAAAGTCGGTGAGTTTGCTAAAATGAGTAATAGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTACGAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAgagAATGTGTGTAAGGAAAAAGGAAACTTCCTAGAGAAGGCCAGACAGAGGAATGAAAGAAACAAGCTGGATGTGGAGCGCTACTACATGAAGAAGCGGCATTTAGACAGGATCCAGATGCTTGAGAAGAAGAAACCCTGGGTGgaGTATGAGACGGCACGTAAAGAGCTGGAGGGGGTGAAGAAGGAAAGAGATGAAATGAAAAGGAAGCTTAGGTTCCTGAAGGAAGCTCAGGAGCCGCTGCTCAGAAAGATCCGCTCTGTGGAGAGTGAGCTGCAGCCCATCGAGCAGCAGATGAAGGAGATGACCAACCGTATCAAAGAGGCAACGCAGAAATGTAAGCAGAAACACGACCAGCTTGAACTGAAGAATAAAGAGGTTGATGACATCAAACAGGACATGAGTCTAAAGCAGACGGAGGAGGCGGACAGGCAGAAGCGGATTGGACACACGCAACTGATGATCAGAGATCTGCAAAAGGAGCTTCAGAACATGGGCACCATTGAGGACGTTACTCCTCAGATTGAGGCTATCAATGCAGAGCTGAGGAACATTCAGGAAGAAAGAGCCAGACTGGAGAGTGAGAGTCTGGACCTGCGCAGAGATAAAGATGAAATCACTGGAGAATTTGCGCGTTTGCAGAATCGCCTGAGGAGTCTGGATGACATGATGAAGATTAAAGAGGAGAAATTGCGCAGCCGCTTTCGTGACACATACACAGCCCTTGAGTGGCTGAGGAAAAATCGTGATCGTTATGAAGGAGTTGTCCATGAGCCCATGATGCTGGTGATAAATGTTCGTGATGCTCGGCATGCAAAATACATTGAGACTCACATTTCTGTCAATGACTTGAGAGCTTTCGTCTTCCAGAGACAGGATGATAACGACAAATTTATGAATGAGatgagagATACGCAGAGGCTGCGAGTTAACAGCATCATCGCTCCTACAGAGTCTTGCTCTAAACGACCACCGTCACGACCCATCGAGACCCTCAAgcCTTACGGCTTCATCTCGTACTTGCGAGAGATGTTTGATGCTCCTGAGGAGGTTATGAGTTATTTATGCCATCAGTACAGAGTTAACGATGTACCAATAGGAACAGAGAAGACCAAGGGCATGATTGAATCGGTGATCAAAGACCTTCAGTTGAGAACGATTTACACAGCGGAGGAGAGGTATAATGTGAAGAAGTCTGCTTACTCCAATAATGTGGTCTCCAGTAACTCGGCTCTGCGACCACCACAGTTCTTGACTACCACCATAGATGTAGAGGAGAGGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAGCAGGAGATTAAGAACTTGGAGAAGGAGCTGGACGATAAGACTAATGAACTGACAACCTATAGAAGAAACATTGCAGAGGCTAAAGAGCGCTGGCTGAATCCGCTGAAGAAGCTGGTGGAGCTGATCAATGTGCGCTTCAGTGATTTCTTTCAGTCTATGCAGTGTGCAGGAGAGGTGGATCTGCACTCAGAGAATGAGGAGGAGTACGATAAATATGGCATCCGCATCCAGGTGCAGTTCCGCAGAAACACACGGATGCACGAGCTCACGCCACACCATCAGAGTGGAGGAGAGCGCAGtgtcaccaccatgctttacCTCATGTCCCTGCAGGAGCTCAACCGCTGCCCCTTCAGAGTGGTGGACGAGATCAATCagGGAATGGATCCTGTCAACGAGAGACGCGTGTTTGACATTGTTGTGAGGGCGGCCTGTGGTGTGAACACGTCTCAGTATTTCTTCATCACACCTAAGctTCTCCAGAACCTGCAGTACGCCGAGCAGATGACCATCCTCTGTGTGCACAACGGCCCTCAAATGCTGCCGCCAAACAAGTGGAATGAAAAGGCTTTCATCCAGCGAGCCAGACGCAGAAACCGGACCTGAAGTTCCTCAACGCCTTCATCTGCCTGAAAATAGTAACCGTTTCTAGTTCACAtgtaatcaatcaataaatgcaaatgtttatttaaaaaaaaggtatttttccAAGTACAAGTGTTTGTTCTCAATAAAGGAATGTTAGGTTCAGATAAACCCTCAAGTTCATGACAGAATGATATGCTTAATGGAGCATTTGATATCCAGCATGCTGGTCAAACTATTAAAGCATCAACAGTTTTTAACCTAATAAAAGTGTTTCATTTAAATGGTACCTATTTTACtgcttttacaagatgtaagatcaGCATTTGGTGTCTCCAGATTGTGTCTGTGAAGCTTCAGCTAAAAATacccatcaaattatttattatagcctccagaatctgctcaTTTTGGTGTCTTAAGTATggtgttgctgtttttgttgcctgtgactttaaatgcaaatgagctgcttctccccgcccaccgttcccatgtgtctgcttctcatcatgcattacgtcagataaacagcagtcagtgacagagatgGATGCAGATGAAGCTtgaatacagctcattagtcaataatatcaggtaagtttatttgatgtatttgcggTGAattttattcaagcctttctga
>TCONS_00004953
ATCACACAGCGACTTACCGACAACACAGGCGCGAAACGAAAGTGAATAGACTGTGCTGAACATCAACCAGAGTGACCGACCAGAAATGGAGCAGCCGCATAAGAGAAAGCGAAAAAGCCACGAATTGTCCAACTCACAGCCCTCCGATCGTGAACCTGCAACGTCCACCAGTGCAAATGCCCGAGAAGGAGATTTCATGGAGGGCGCAATCGTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCTGAAGTTTTCCCCGGACCCAAACTGAACATGATCGTTGGAGCCAACGGCACAGGGAAGTCCAGTATCGTGTGTGCCATCTGTCTGGGCCTGGCTGGAAAAACATCTGTCCTGGGCCGAGGAGACAAGGTTGGTCTGTATGTGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGGAAAAAGTCGGTGAGTTTGCTAAAATGAGTAATAGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTACGAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAgagGTGATCAAAGACCTTCAGTTGAGAACGATTTACACAGCGGAGGAGAGGTATAATGTGAAGAAGTCTGCTTACTCCAATAATGTGGTCTCCAGTAACTCGGCTCTGCGACCACCACAGTTCTTGACTACCACCATAGATGTAGAGGAGAGGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAGCAGGAGATTAAGAACTTGGAGAAGGAGCTGGACGATAAGACTAATGAACTGACAACCTATAGAAGAAACATTGCAGAGGCTAAAGAGCGCTGGCTGAATCCGCTGAAGAAGCTGGTGGAGCTGATCAATGTGCGCTTCAGTGATTTCTTTCAGTCTATGCAGTGTGCAGGAGAGGTGGATCTGCACTCAGAGAATGAGGAGGAGTACGATAAATATGGCATCCGCATCCAGGTGCAGTTCCGCAGAAACACACGGATGCACGAGCTCACGCCACACCATCAGAGTGGAGGAGAGCGCAGtgtcaccaccatgctttacCTCATGTCCCTGCAGGAGCTCAACCGCTGCCCCTTCAGAGTGGTGGACGAGATCAATCagGGAATGGATCCTGTCAACGAGAGACGCGTGTTTGACATTGTTGTGAGGGCGGCCTGTGGTGTGAACACGTCTCAGTATTTCTTCATCACACCTAAGctTCTCCAGAACCTGCAGTACGCCGAGCAGATGACCATCCTCTGTGTGCACAACGGCCCTCAAATGCTGCCGCCAAACAAGTGGAATGAAAAGGCTTTCATCCAGCGAGCCAGACGCAGAAACCGGACCTGAAGTTCCTCAACGCCTTCATCTGCCTGAAAATAGTAACCGTTTCTAGTTCACAtgtaatcaatcaataaatgcaaatgtttatttaaaaaaaaggtatttttccAAGTACAAGTGTTTGTTCTCAATAAAGGAATGTTAGGTTCAGATAAACCCTCAAGTTCATGACAGAATGATATGCTTAATGGAGCATTTGATATCCAGCATGCTGGTCAAACTATTAAAGCATCAACAGTTTTTAACCTAATAAAAGTGTTTCATTTAAATGGTA
>TCONS_00004954
AGTTGTCagaagcacgtcaataatcacaTGCAcgttaatatatattaatataaatgtggggcggggcgatggcatcgtctatcggcccatcCCTaatcgctacccactgtgctgctGCACTGTGGATTAACATGCTCGGATGAATTGCTCACCTAAAGAATAATGTGTTCTAGCAAAACAGACATTGTACATTTGAATTTGGCCCAGATTTTAGGGAAGCTTTTTGTTTTAGTGTAGATTAATAATCACTCTGCTGTCATAAGACACACAGGAGTGTTTCAAATCTGAAATTGTGTAAGTTGCTTGATCATGCAGGAATGTGAGATTTGAGTGACTCTTGTGTTTGTGTTCAGGGAATGGATCCTGTCAACGAGAGACGCGTGTTTGACATTGTTGTGAGGGCGGCCTGTGGTGTGAACACGTCTCAGTATTTCTTCATCACACCTAAGctTCTCCAGAACCTGCAGTACGCCGAGCAGATGACCATCCTCTGTGTGCACAACGGCCCTCAAATGCTGCCGCCAAACAAGTGGAATGAAAAGGCTTTCATCCAGCGAGCCAGACGCAGAAACCGGACCTGAAGTTCCTCAACGCCTTCATCTGCCTGAAAATAGTAACCGTTTCTAGTTCACAtgtaatcaatcaataaatgcaaatgtttatttaaaaaaaaggtatttttccAAGTACAAGTGTTTGTTCTCAATAAAGGAATGTTAGGTTCAGATAAA
>TCONS_00004955
GGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGTGAGCTCAGTCTACTCAGACTCCCCTACCTCTGCTTCATTCAAGCTTGAATCATGTATCACATGACATCGCATGTGTGTGCTTTCTTTTCAGGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAG
>TCONS_00004956
CGAAAGTGAATAGACTGTGCTGAACATCAACCAGAGTGACCGACCAGAAATGGAGCAGCCGCATAAGAGAAAGCGAAAAAGCCACGAATTGTCCAACTCACAGCCCTCCGATCGTGAACCTGCAACGTCCACCAGTGCAAATGCCCGAGAAGGAGATTTCATGGAGGGCGCAATCGTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCTGAAGTTTTCCCCGGACCCAAACTGAACATGATCGTTGGAGCCAACGGCACAGGGAAGTCCAGTATCGTGTGTGCCATCTGTCTGGGCCTGGCTGGAAAAACATCTGTCCTGGGCCGAGGAGACAAGGTTGGTCTGTATGTGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGGAAAAAGTCGGTGAGTTTGCTAAAATGAGTAATAGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTACGAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAgagAATGTGTGTAAGGAAAAAGGAAACTTCCTAGAGAAGGCCAGACAGAGGAATGAAAGAAACAAGCTGGATGTGGAGCGCTACTACATGAAGAAGCGGCATTTAGACAGGATCCAGATGCTTGAGAAGAAGAAACCCTGGGTGgaGTATGAGACGGCACGTAAAGAGCTGGAGGGGGTGAAGAAGGAAAGAGATGAAATGAAAAGGAAGCTTAGGTTCCTGAAGGAAGCTCAGGAGCCGCTGCTCAGAAAGATCCGCTCTGTGGAGAGTGAGCTGCAGCCCATCGAGCAGCAGATGAAGGAGATGACCAACCGTATCAAAGAGGCAACGCAGAAATGTAAGCAGAAACACGACCAGCTTGAACTGAAGAATAAAGAGGTTGATGACATCAAACAGGACATGAGTCTAAAGCAGACGGAGGAGGCGGACAGGCAGAAGCGGATTGGACACACGCAACTGATGATCAGAGATCTGCAAAAGGAGCTTCAGAACATGGGCACCATTGAGGACGTTACTCCTCAGATTGAGGCTATCAATGCAGAGCTGAGGAACATTCAGGAAGAAAGAGCCAGACTGGAGAGTGAGAGTCTGGACCTGCGCAGAGATAAAGATGAAATCACTGGAGAATTTGCGCGTTTGCAGAATCGCCTGAGGAGTCTGGATGACATGATGAAGATTAAAGAGGAGAAATTG

Function

symbol description
smc5 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

GO:

id name namespace
GO:0007062 sister chromatid cohesion biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061013-288 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

Ensembl:

ensembl_id ENSDARG00000044282

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004952 False 3831 mRNA 0.47 23 15617741 15644974
TCONS_00004951 False 3966 mRNA 0.47 24 15617741 15644974
TCONS_00004953 False 2447 mRNA 0.48 16 15618098 15644940
TCONS_00004954 False 731 processed_transcript 0.42 2 15618216 15619015
TCONS_00004955 False 788 lncRNA 0.49 6 15622898 15631358
TCONS_00004956 True 1384 mRNA 0.49 10 15637190 15644904

Neighbor

gene id symbol gene type direction distance location
XLOC_002663 sgtb coding downstream 212177 15381972 ~ 15405564 (-)
XLOC_002662 pum3 coding downstream 277291 15321522 ~ 15340450 (-)
XLOC_002661 spp1 coding downstream 488970 15120711 ~ 15128771 (-)
XLOC_002660 CT027832.1 coding downstream 531444 15082410 ~ 15086297 (-)
XLOC_002659 cldn23b coding downstream 564127 15050469 ~ 15053614 (-)
XLOC_002665 mamdc2b coding upstream 3883 15648857 ~ 15672862 (-)
XLOC_002666 NA coding upstream 71765 15716739 ~ 15724104 (-)
XLOC_002667 tjp2a coding upstream 170891 15815865 ~ 15879569 (-)
XLOC_002668 pip5k1ba coding upstream 236335 15881309 ~ 15964029 (-)
XLOC_002669 aldh7a1 coding upstream 361931 16006905 ~ 16028082 (-)
XLOC_002656 NA non-coding downstream 574993 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding downstream 582781 15032972 ~ 15034960 (-)
XLOC_002653 CT027820.1 non-coding downstream 885342 14732283 ~ 14732399 (-)
XLOC_002648 BX000705.1 non-coding downstream 1686045 13931569 ~ 13931696 (-)
XLOC_002673 NA non-coding upstream 1361251 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1371825 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 1440550 17085524 ~ 17088911 (-)
XLOC_002678 BX324123.4 non-coding upstream 1459324 17104298 ~ 17132910 (-)

Expression


Co-expression Network