LOC110531823 (ybx2a)


Basic Information

Item Value
gene id LOC110531823
gene name ybx2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25446153 ~ 25451114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987675.1
TGGATCCCGGGAGGTTGTCGGGATAAAAAGTTTGCGGTGGCGGCCAGAGCAAAGTTTGGAGAGGGGGATATTGTTGTAAACGTGTATCCGTGAGAGTATGACCGACGCAGAAGCGCAGAGCGCCCCACCGTCGGCTCCGGTGGAAGAACAGCCACAGCCGGAGAGAAAAATTATAGCCACCGCAGTCCAAGGCACCGTGAAATGGTTCAACGTGCGCAACGGATATGGCTTTATCAACAGaaacgACACCAAAGAGGATGTCTTTGTTCATCAGACTGCCATCAAGAAGAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGGGATGGGGAGGTGGTAGAGTTTGACGTGGTCGAGGCCGCCAAGGTAGGCAAACCTctctctctctccccctctcagggCTCGGAGGCAGCCAACGTGACAGGGCCTGGTGGGGTTCCCGTTAAAGGCAGTCGGTACGCGCCCACCAAACGCCGTTTCCGCCGGCGTTTGTCCTCTCGCAGCCCCAGGCCCGGTGACGAGAAGGGCGACGGCACCTCAGGCCCCACTTCGGAGCACGGAGGAGAGCACGACGGTGAGCGGCCCGGAGACAGGCCCCCACCGCGCCGGCGCAGGCCCCGCCGACCCAGACAGGAAGGGCAAGAGGGCGAGCCAGGGGAACAGGAGGTAGGCGCAGAAGGCGACCAGCAGAGGCCTCCACCGCGCAGGTTTAGGACCCAGTACCGTAGGCCATTCCGTCCTCGCCCACCTCCCGGGGAGGTTCAGGCGGGTGCTGCCACCTCAAAGGGCCAGGCAACAGAAGGGCAGGAGGTGGTGGAGGCCCAGGAGGGCCAGCAGACAAACAGGGAGCAGGCCAACGAAGACGGCCAAAAGCCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAATCTAACTCTGTCTCTAAAGATGGGACAGAGAAGCCCGAAAAGCTAGCCTCGGAACCTAGCACTCCCCTTCAGACAGCCAAGCCAGCCGACCCCAAATCCTCCCCCAAATCCTCACCTAAAGGCTCCCCCAAAATGTCCCCCAAAATGTCCCCCAAGTCCTCCCCCAAATCACCAGAGCCACCTGCCACGACAGTTCCCGCAGCCACAGAATGACACCCATGATGGGACGGTGTAACGTGACCCCAGACAAGAGGTTCCTAGGGAGGGTTAGCTGGGGGACCGAGCCCCTCTCACCACACCCACCACTGTGCACTACTCTCCAATCCCCCCATCCCATcttactgaccccccccccctgactTGTCTAGCTAGACACTGCAAATGGGagaaggatgggagggagggagttgcgTGTATTCATAAATGTTAAAATACGCCTAGAAAGATCTAGAGGAAAGAAAGTATTTAAAAATCTGCTTGGATGCCCAGTTACTCCACAAACCCCGAGCTAGTTTACTTTAATTGACTGAGAATGGGCATGAGCAGTAGAGGTCCCAGCTGCTATTTTAAGTTTGATGATGTGGAAAGCGAAGCGTGTGTGAGGGTAGTTGTCCAGGAGTTGCGACGATAACCTTGCCACCCCCCTAGTTTCTAACATGCTGCAGCCCACACCCTATTTGGAAAATCAAGGCCGGGggttggtttaaaaaaaatatacatttttgttcTACTTATTTTTGTATGTGCTTTTCTTTTGGAGGGGATTATGTGCAATGTCAGTATCTAAATGTCGataaaatgtttgcaaaaaccA
>XM_036987676.1
TGGATCCCGGGAGGTTGTCGGGATAAAAAGTTTGCGGTGGCGGCCAGAGCAAAGTTTGGAGAGGGGGATATTGTTGTAAACGTGTATCCGTGAGAGTATGACCGACGCAGAAGCGCAGAGCGCCCCACCGTCGGCTCCGGTGGAAGAACAGCCACAGCCGGAGAGAAAAATTATAGCCACCGCAGTCCAAGGCACCGTGAAATGGTTCAACGTGCGCAACGGATATGGCTTTATCAACAGaaacgACACCAAAGAGGATGTCTTTGTTCATCAGACTGCCATCAAGAAGAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGGGATGGGGAGGTGGTAGAGTTTGACGTGGTCGAGGCCGCCAAGctctctctctccccctctcagggCTCGGAGGCAGCCAACGTGACAGGGCCTGGTGGGGTTCCCGTTAAAGGCAGTCGGTACGCGCCCACCAAACGCCGTTTCCGCCGGCGTTTGTCCTCTCGCAGCCCCAGGCCCGGTGACGAGAAGGGCGACGGCACCTCAGGCCCCACTTCGGAGCACGGAGGAGAGCACGACGGTGAGCGGCCCGGAGACAGGCCCCCACCGCGCCGGCGCAGGCCCCGCCGACCCAGACAGGAAGGGCAAGAGGGCGAGCCAGGGGAACAGGAGGTAGGCGCAGAAGGCGACCAGCAGAGGCCTCCACCGCGCAGGTTTAGGACCCAGTACCGTAGGCCATTCCGTCCTCGCCCACCTCCCGGGGAGGTTCAGGCGGGTGCTGCCACCTCAAAGGGCCAGGCAACAGAAGGGCAGGAGGTGGTGGAGGCCCAGGAGGGCCAGCAGACAAACAGGGAGCAGGCCAACGAAGACGGCCAAAAGCCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAATCTAACTCTGTCTCTAAAGATGGGACAGAGAAGCCCGAAAAGCTAGCCTCGGAACCTAGCACTCCCCTTCAGACAGCCAAGCCAGCCGACCCCAAATCCTCCCCCAAATCCTCACCTAAAGGCTCCCCCAAAATGTCCCCCAAAATGTCCCCCAAGTCCTCCCCCAAATCACCAGAGCCACCTGCCACGACAGTTCCCGCAGCCACAGAATGACACCCATGATGGGACGGTGTAACGTGACCCCAGACAAGAGGTTCCTAGGGAGGGTTAGCTGGGGGACCGAGCCCCTCTCACCACACCCACCACTGTGCACTACTCTCCAATCCCCCCATCCCATcttactgaccccccccccctgactTGTCTAGCTAGACACTGCAAATGGGagaaggatgggagggagggagttgcgTGTATTCATAAATGTTAAAATACGCCTAGAAAGATCTAGAGGAAAGAAAGTATTTAAAAATCTGCTTGGATGCCCAGTTACTCCACAAACCCCGAGCTAGTTTACTTTAATTGACTGAGAATGGGCATGAGCAGTAGAGGTCCCAGCTGCTATTTTAAGTTTGATGATGTGGAAAGCGAAGCGTGTGTGAGGGTAGTTGTCCAGGAGTTGCGACGATAACCTTGCCACCCCCCTAGTTTCTAACATGCTGCAGCCCACACCCTATTTGGAAAATCAAGGCCGGGggttggtttaaaaaaaatatacatttttgttcTACTTATTTTTGTATGTGCTTTTCTTTTGGAGGGGATTATGTGCAATGTCAGTATCTAAATGTCGataaaatgtttgcaaaaaccA
>XM_036987677.1
TGGATCCCGGGAGGTTGTCGGGATAAAAAGTTTGCGGTGGCGGCCAGAGCAAAGTTTGGAGAGGGGGATATTGTTGTAAACGTGTATCCGTGAGAGTATGACCGACGCAGAAGCGCAGAGCGCCCCACCGTCGGCTCCGGTGGAAGAACAGCCACAGCCGGAGAGAAAAATTATAGCCACCGCAGTCCAAGGCACCGTGAAATGGTTCAACGTGCGCAACGGATATGGCTTTATCAACAGaaacgACACCAAAGAGGATGTCTTTGTTCATCAGACTGCCATCAAGAAGAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGGGATGGGGAGGTGGTAGAGTTTGACGTGGTCGAGGCCGCCAAGGTAGGCAAACCTggCTCGGAGGCAGCCAACGTGACAGGGCCTGGTGGGGTTCCCGTTAAAGGCAGTCGGTACGCGCCCACCAAACGCCGTTTCCGCCGGCGTTTGTCCTCTCGCAGCCCCAGGCCCGGTGACGAGAAGGGCGACGGCACCTCAGGCCCCACTTCGGAGCACGGAGGAGAGCACGACGGTGAGCGGCCCGGAGACAGGCCCCCACCGCGCCGGCGCAGGCCCCGCCGACCCAGACAGGAAGGGCAAGAGGGCGAGCCAGGGGAACAGGAGGTAGGCGCAGAAGGCGACCAGCAGAGGCCTCCACCGCGCAGGTTTAGGACCCAGTACCGTAGGCCATTCCGTCCTCGCCCACCTCCCGGGGAGGTTCAGGCGGGTGCTGCCACCTCAAAGGGCCAGGCAACAGAAGGGCAGGAGGTGGTGGAGGCCCAGGAGGGCCAGCAGACAAACAGGGAGCAGGCCAACGAAGACGGCCAAAAGCCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAATCTAACTCTGTCTCTAAAGATGGGACAGAGAAGCCCGAAAAGCTAGCCTCGGAACCTAGCACTCCCCTTCAGACAGCCAAGCCAGCCGACCCCAAATCCTCCCCCAAATCCTCACCTAAAGGCTCCCCCAAAATGTCCCCCAAAATGTCCCCCAAGTCCTCCCCCAAATCACCAGAGCCACCTGCCACGACAGTTCCCGCAGCCACAGAATGACACCCATGATGGGACGGTGTAACGTGACCCCAGACAAGAGGTTCCTAGGGAGGGTTAGCTGGGGGACCGAGCCCCTCTCACCACACCCACCACTGTGCACTACTCTCCAATCCCCCCATCCCATcttactgaccccccccccctgactTGTCTAGCTAGACACTGCAAATGGGagaaggatgggagggagggagttgcgTGTATTCATAAATGTTAAAATACGCCTAGAAAGATCTAGAGGAAAGAAAGTATTTAAAAATCTGCTTGGATGCCCAGTTACTCCACAAACCCCGAGCTAGTTTACTTTAATTGACTGAGAATGGGCATGAGCAGTAGAGGTCCCAGCTGCTATTTTAAGTTTGATGATGTGGAAAGCGAAGCGTGTGTGAGGGTAGTTGTCCAGGAGTTGCGACGATAACCTTGCCACCCCCCTAGTTTCTAACATGCTGCAGCCCACACCCTATTTGGAAAATCAAGGCCGGGggttggtttaaaaaaaatatacatttttgttcTACTTATTTTTGTATGTGCTTTTCTTTTGGAGGGGATTATGTGCAATGTCAGTATCTAAATGTCGataaaatgtttgcaaaaaccA
>XM_036987678.1
TGGATCCCGGGAGGTTGTCGGGATAAAAAGTTTGCGGTGGCGGCCAGAGCAAAGTTTGGAGAGGGGGATATTGTTGTAAACGTGTATCCGTGAGAGTATGACCGACGCAGAAGCGCAGAGCGCCCCACCGTCGGCTCCGGTGGAAGAACAGCCACAGCCGGAGAGAAAAATTATAGCCACCGCAGTCCAAGGCACCGTGAAATGGTTCAACGTGCGCAACGGATATGGCTTTATCAACAGaaacgACACCAAAGAGGATGTCTTTGTTCATCAGACTGCCATCAAGAAGAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGGGATGGGGAGGTGGTAGAGTTTGACGTGGTCGAGGCCGCCAAGggCTCGGAGGCAGCCAACGTGACAGGGCCTGGTGGGGTTCCCGTTAAAGGCAGTCGGTACGCGCCCACCAAACGCCGTTTCCGCCGGCGTTTGTCCTCTCGCAGCCCCAGGCCCGGTGACGAGAAGGGCGACGGCACCTCAGGCCCCACTTCGGAGCACGGAGGAGAGCACGACGGTGAGCGGCCCGGAGACAGGCCCCCACCGCGCCGGCGCAGGCCCCGCCGACCCAGACAGGAAGGGCAAGAGGGCGAGCCAGGGGAACAGGAGGTAGGCGCAGAAGGCGACCAGCAGAGGCCTCCACCGCGCAGGTTTAGGACCCAGTACCGTAGGCCATTCCGTCCTCGCCCACCTCCCGGGGAGGTTCAGGCGGGTGCTGCCACCTCAAAGGGCCAGGCAACAGAAGGGCAGGAGGTGGTGGAGGCCCAGGAGGGCCAGCAGACAAACAGGGAGCAGGCCAACGAAGACGGCCAAAAGCCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAATCTAACTCTGTCTCTAAAGATGGGACAGAGAAGCCCGAAAAGCTAGCCTCGGAACCTAGCACTCCCCTTCAGACAGCCAAGCCAGCCGACCCCAAATCCTCCCCCAAATCCTCACCTAAAGGCTCCCCCAAAATGTCCCCCAAAATGTCCCCCAAGTCCTCCCCCAAATCACCAGAGCCACCTGCCACGACAGTTCCCGCAGCCACAGAATGACACCCATGATGGGACGGTGTAACGTGACCCCAGACAAGAGGTTCCTAGGGAGGGTTAGCTGGGGGACCGAGCCCCTCTCACCACACCCACCACTGTGCACTACTCTCCAATCCCCCCATCCCATcttactgaccccccccccctgactTGTCTAGCTAGACACTGCAAATGGGagaaggatgggagggagggagttgcgTGTATTCATAAATGTTAAAATACGCCTAGAAAGATCTAGAGGAAAGAAAGTATTTAAAAATCTGCTTGGATGCCCAGTTACTCCACAAACCCCGAGCTAGTTTACTTTAATTGACTGAGAATGGGCATGAGCAGTAGAGGTCCCAGCTGCTATTTTAAGTTTGATGATGTGGAAAGCGAAGCGTGTGTGAGGGTAGTTGTCCAGGAGTTGCGACGATAACCTTGCCACCCCCCTAGTTTCTAACATGCTGCAGCCCACACCCTATTTGGAAAATCAAGGCCGGGggttggtttaaaaaaaatatacatttttgttcTACTTATTTTTGTATGTGCTTTTCTTTTGGAGGGGATTATGTGCAATGTCAGTATCTAAATGTCGataaaatgtttgcaaaaaccA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09276 YBX1, NSEP1; Y-box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987675.1 False 1727 mRNA 0.56 10 25446153 25451114
XM_036987676.1 False 1715 mRNA 0.56 10 25446153 25451114
XM_036987677.1 False 1706 mRNA 0.56 10 25446153 25451114
XM_036987678.1 True 1694 mRNA 0.56 10 25446153 25451114

Neighbor

gene id symbol gene type direction distance location
LOC110531819 LOC106577555 coding upstream 12336 25426398 ~ 25433817 (+)
LOC110531818 LOC106577557 coding upstream 28045 25411771 ~ 25418108 (+)
LOC110531817 LOC106577558 coding upstream 35767 25399509 ~ 25410386 (+)
LOC110533008 NA coding upstream 48199 25396279 ~ 25397954 (+)
LOC110531816 NA coding upstream 76489 25367365 ~ 25369664 (+)
LOC110531824 LOC106577554 coding downstream 57430 25508544 ~ 25523517 (+)
LOC110531825 LOC106577732 coding downstream 74257 25525371 ~ 25532692 (+)
LOC118936682 NA coding downstream 81316 25532430 ~ 25536173 (+)
LOC118966181 NA coding downstream 89867 25540981 ~ 25542036 (+)
LOC118966182 NA coding downstream 95991 25547105 ~ 25547900 (+)
LOC110531811 LOC106577563 non-coding upstream 108785 25323999 ~ 25339758 (+)
G786005 NA non-coding upstream 125024 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 125472 25320393 ~ 25320681 (+)
G785950 trmt44 non-coding upstream 151059 25294064 ~ 25295094 (+)
G786068 NA non-coding downstream 35298 25486412 ~ 25486645 (+)
G786089 NA non-coding downstream 86410 25537524 ~ 25543652 (+)
G786109 LOC106577552 non-coding downstream 123081 25574195 ~ 25577299 (+)
G786133 NA non-coding downstream 168963 25620077 ~ 25620295 (+)
LOC110531788 LOC106577570 other upstream 494057 24872772 ~ 24952098 (+)
G785138 NA other upstream 863276 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1358827 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1607039 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1642016 23802151 ~ 23804811 (+)
G786091 NA other downstream 94117 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 261883 25712997 ~ 25742909 (+)
G786218 NA other downstream 506970 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 961998 26413112 ~ 26413532 (+)

Expression


Co-expression Network