LOC110531824 (LOC106577554)


Basic Information

Item Value
gene id LOC110531824
gene name LOC106577554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25508544 ~ 25523517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987679.1
TGGAGGCCTGTGAACTCTGCGTGGCCCTCCCTTCCTCTAATCTGGTTTTCTGGAAATCCCCGAAGTGCACGCTTTTCACTGGAAAACATTTAGCTTTCTAGCTGCTGTTTCTTTGACACCTTTGCATTGACAGAGAACCTAGGTGCTGCAAGAAAATATTCATCACCGGGAGGCGAGATCGGATCGCCTTTCTTCATCTCCTGCCTAGAGGCCCTGTGTCCAGTCCTCTCCTCCCATCGGTCCAGTGAGCAGTCGAGAGAATCAACAGATACAGGATGGAAGAGCAGGAGTTGAGCTTCCCCATGAGCCAGGAGTCCTTCCAGCAGCTTTGGGACTACCAATGTAGCTACTTAAGAGTGGACAGAGATGGTTGCGTCATGTCTACTCAGGGGTCCAATATTCCACCGTTTGGGACTGGAAACTGGTCTGACCTGGATGTCTCGCTAGCTCCCGTACTTCCCGAGGCCACCTTCCACGAGGACTTTGACGAGGGGCTGTTTGAGCTGCCTGAGCCCCTGGCCGTGGAGCCCTCGATGTCGCCCCTGGACAGCGTGCCTCCCCCCGCCTCCACCGTCCCCTCCACCATCGACTACCCGGGGGAGCACGGCTTCCAGCTGCGCTTCCACAAGTCTGGCACCGCCAAGTCTGTCACCTCCACCtatTCTGTGCAGCTGATCAAGCTGTACTGCCAGCGGGCTAAGACCTGCCCGGTGGAGGTGCTGATGACCAAGGAGCCCCCGCCAGGAGCCATCCTCCGTGCCACCGCCATCTACAAGAAGTCAGAGCATGTGTCCGAAGTGGTCAGCCGCTGCCCCCACCACCAGAGCACGTCTGACGGCTATGAAGGTGTGACCCACCGCAGTCACCTGATCAGGGTGGAGGGGAGCCAGCGGGCTCAGTACCTGGAGGATGGTAACACCAAGCGTCAGAGCGTGCTGCTGCCTTATGAGCCTCCTCAGCTGGGCTCTGAGGCAACTACTGTTCTCCTGAACTTCATGTGCAACTCCAGTTGTATGGGTGGTATGAATCGACGGCCCATCCTCACCATCCTGACGCTGGAGACCCAGGAtggTCAGGTTTTGGGTCGCCGTTGTTTTGAGGTCCGAGTCTGTGCCTGCCCCGGTCGGGACCGCAAGACCGAGGAAGAGAACGCTAACAAAGCTCTGAACGGGACCAAGAGAAAGTCCCAACAGGCATTGCCGCCTCCGGGAACCAGTAAGAAGATCAAGAGCGGCTCCAGCACTGAGGATGACGACAAGGACAATGTATTCTTGTTGCAGgTTCGTGGAAGACAGCGCTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCGCATTCCTCCCGTTGAGCAGGAGAAATACAAGAAGAAAGGTTTCTCAAAGAGCCGCAAGCAAGAAGCGTTGGCCCCAAAGAGCGGAAAACGGATGCTTGCAAAGGAGGGGAGGAGCGACTCAGACTAAGGCCAGGACACCTCAGCCCTTCCCTACTGTCTATTCCAGACCAACATTAAATTGTGACTCCAAAGTAAATGCCCAATACCAAACCCTAGGCAATACATGTAGTCACTTCTTACAAGTCTGAAAGGATAGGTGTTAGCAAGATGGTAATAGCTCCAGCTAGGCAGCTATACTCAACAGGCTGACCTCGGTCCGAAACCCGGACCAGAACGTTGTCAATACGGACTTCGGGTCCCGCCCCAAAAATTATAATATCCCTTGGTATTATATGAACACACAAGGCATGGCAAAATATGTGGAATTGTTGGAAATAAGCTTTAACACTACAACAAATGtccgccaacaagaggggtgtgaatagtttggGGTTGCAAGTTGGGGGTTCTTTAATACACTGATAAATGGTAAAGGTCCGGATGGATATTGTCATCTAGGAAATTTGTGTTACCAGACCTTCTCATAGTACTTGGGTGCAATGGTAGAATTGTAACTATATTTGAGATGCCAGTCACTTTCGGTACAATACAAAGTGTGTAAGTGTAGGACCTAGGGTTTGGATTGGGTAAATAGGCTGACCACCATGCCAGTCACTTTCGGTACAATACAAAGTGTGTGTAAGTGTAGGACCTAGGGTTTGGATTGGGTAAATAGGCTGACCACCACCATGCCAGTCACTTTCGGTACAATACAAAGTGTGTAAGTGTAGGACCTAGGGTTTGGATTGGGTAAATAGGCTGACCACCATGCCAGTCACTTTCGGTACAACACAAAGTGCCTAAGTGTAGGCCTTAACCATCTGGTGTGACTTCCTCCTCACCTGCCCCCCAAAGAGCACTTTAGCTTGTGCTTTTATGATTTGGACCACTTAAAACTAGTCATACCTGCCTAGAAACTATGCTTTGTTACCAGTTAATTGGCCAATTGCCTGTTAGTATTTTTGATACCTGCTAAACATAACCACTGCCTTCATTCCTCCCCCTGAACCCTTGACCTGGTTCCCTGTTAATCATGGTCCTATTGAGGCGTTGGTCTTTCTTTTTCCCCCATTTTTGTACTGCAGATCTAGGAACTATTTTTGTAAGTTCTTTTAGGAACCGTTAAATGATTTTGTTTTCTCagaatgtttttttctttgttttcaataaatgtttttttttttattttgtactaATTCCAGCATTTGTCCaatgtcttttctctctcctatGCAGAGTTCTGATACTGTGCTTATGATATACTTGATTAAGCACATTTTATATTGGTTTACTTTATGGTTTTCTGATGGATACTCTTTTTGCTGATGTCATTTGGTGCTGAGACATGATGCTCTTTTGTTTAGGGAAAAGGGAAACATTTCAGGGAACTttaaaaagtcaaataaaagcaATTTCCTAAATA

Function

NR:

description
cellular tumor antigen p53-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987679.1 True 2867 mRNA 0.49 11 25508544 25523517

Neighbor

gene id symbol gene type direction distance location
LOC110531823 ybx2a coding upstream 57430 25446153 ~ 25451114 (+)
LOC110531819 LOC106577555 coding upstream 74727 25426398 ~ 25433817 (+)
LOC110531818 LOC106577557 coding upstream 90436 25411771 ~ 25418108 (+)
LOC110531817 LOC106577558 coding upstream 98158 25399509 ~ 25410386 (+)
LOC110533008 NA coding upstream 110590 25396279 ~ 25397954 (+)
LOC110531825 LOC106577732 coding downstream 1854 25525371 ~ 25532692 (+)
LOC118936682 NA coding downstream 8913 25532430 ~ 25536173 (+)
LOC118966181 NA coding downstream 17464 25540981 ~ 25542036 (+)
LOC118966182 NA coding downstream 23588 25547105 ~ 25547900 (+)
zbtb4 LOC106577551 coding downstream 80244 25603761 ~ 25629568 (+)
G786068 NA non-coding upstream 21899 25486412 ~ 25486645 (+)
LOC110531811 LOC106577563 non-coding upstream 171176 25323999 ~ 25339758 (+)
G786005 NA non-coding upstream 187415 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 187863 25320393 ~ 25320681 (+)
G786089 NA non-coding downstream 14007 25537524 ~ 25543652 (+)
G786109 LOC106577552 non-coding downstream 50678 25574195 ~ 25577299 (+)
G786133 NA non-coding downstream 96560 25620077 ~ 25620295 (+)
G786134 NA non-coding downstream 118295 25641812 ~ 25642049 (+)
LOC110531788 LOC106577570 other upstream 556448 24872772 ~ 24952098 (+)
G785138 NA other upstream 925667 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1421218 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1669430 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1704407 23802151 ~ 23804811 (+)
G786091 NA other downstream 21714 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 189480 25712997 ~ 25742909 (+)
G786218 NA other downstream 434567 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 889595 26413112 ~ 26413532 (+)

Expression


Co-expression Network