LOC110531825 (LOC106577732)


Basic Information

Item Value
gene id LOC110531825
gene name LOC106577732
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25525371 ~ 25532692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615266.2
tctccctccaccctcccattCTGAATGTAGTCTGTGTACCCATATTCAAATTCCCATTTCCCTTAAATGACCTAACCATCACAATAGGGGAATTTATGTTCAGAAATAGGGAGTGAGGAAGAAGGTGCCTGCACATTTCAGTAGATCAAATGCTGTGCCCGCAGTTGGTTTGATTTTGTTCTGCTTGAGAGGGTACCCAGAACGAAGAAGTCTGTATCCCATCTGTTGAAGAATGGACAGGATTCAACATCTGTTATTATGGGctgTGTTGGTGGTGTGCTGTTTAGCTGAGCGGCAGTACTTCCTCCAGTCGAACTCATCCACCTGGGAACAGGCCAGACTCCACTGCCAGGTGTGCTATAAAGAGCTGGTGAGCCTCACCCCTGACAACAACCTGCAACTCGTCCAGAACCTAAACTCTAGTTACTGGATCGGCCTCCGCAAGACTATCCGCAATGACTCCTACCCCTGGTCCAGCTGGTCCAACGGAGACCCCCTCACCTTCCAGAACTGGTACCCTGGCCACCCCGTACTCTCCAAGCCCAAGGACCATGTGATGAAAGTTAACTACGGCTCCAGCCTCCCCAATGAATGTGGGTGTTCCTGCGCCAATGAGAGCAAGCCTACCAATGTTACCCCGGCACCTACTGCTGCCGGTAGCTACAATGATACTGGTTACGGTAATGATACAGATGGCCCTTTCCCAGAGGATGAAAACATGACAACGTTATCAACGATGGAAGCCATGGCAAAGATGAAACTGATAGAGACAACTGAGAGGACAACAATGGCAACAGAGGTGACAACGATGACATCTGAAATGACTACGGGACCAACGTTCTTTACAGGAGTTACTGGTGGCATCAGTGGGACGAATGAGACGGACACAGATGAGAACCAGTGCATAGCCCTATACAGTTTTGGACTTTGGTTTGATCAAATCTGCTCAAAGCCTACCCCCTATATCTGCTAtgaagACCGTTTCTACGGGAACGCCACCATGACCAACAAGACCCTACACAGCGGGACTCTGCATTGGACCCGCGGGCCTGGTGACATCAGCGACTACAGGGTGGAGGTCAACTCCTCTGACTACAACCTGACCCTAAACCACAGCAACTTGAACCGGGCTTACTTGACCTACGACCTTTCCAACCTCACCGCCGGCACCCAGTACAACGTCCAGGTGTTCCCCATTAAGTGTGGAAGGGACCTCAACCCACAGAACGTCTCCTTCTACACCAAGCCTGATGTGATCAAATACCTCAACGTCACCAAGGTCTCAGAAACCAACATCGCCCTGTCCTGGTCCGCTCCTGAGGGTAACCGTGACTTCTACTACATCCAGGTGAGGGGTCAACCTCATCTGAAaatgaccacacacacagagagcgctGTGGTGAAAGGCCTGATACCGGGGGGGTACTACACATTTTATGTCAACGCCAAAGTGGAGGACGAGTCCATTGAGGGAGACCCACTGAACATCTCCTCCTACACCAGTAAGTTACTGCAaactgttgtttgttgttgtttttttcctttGCAAATGTTTGACTGGTTTTCCTAGAGGGAAGTTTCTATAGGGGAAACAGTAAATAAGGCGTGCCACGTCAATTTCATTCCATTGAGAAAATGAATCTGACACGTAATTATGATTGAAAGGTTAGGATGCAACCACACCCCAAATCATTTTCAGACATTCAAATTTGTACATGACCCAGTGCAAATTACACACACACCGATCTCTTCTTTCCCCTTCAGAGCCAGGAAAGGTGTCAAACTTAAACGTGTCTGATCCTACTGCTGACTCTGTCTACCTCCAATGGGAGCAGCCCGCAGGGAATATCTCTGGGTTTAGAGTGGACGTCTTGCATGAAGAAAACGTCAATAACAAGTTTGTAGGCTACCATAGAA
>TU895266
AGACCGTTTCTACGGGAACGCCACCATGACCAACAAGACCCTACACAGCGGGACTCTGCATTGGACCCGCGGGCCTGGTGACATCAGCGACTACAGGGTGGAGGTCAACTCCTCTGACTACAACCTGACCCTAAACCACAGCAACTTGAACCGGGCTTACTTGACCTACGACCTTTCCAACCTCACCGCCGGCACCCAGTACAACGTCCAGGTGTTCCCCATTAAGTGTGGAAGGGACCTCAACCCACAGAACGTCTCCTTCTACACCAAGCCTGATGTGATCAAATACCTCAACGTCACCAAGGTCTCAGAAACCAACATCGCCCTGTCCTGGTCCGCTCCTGAGGGTAACCGTGACTTCTACTACATCCAGGTGAGGGGTCAACCTCATCTGAAaatgaccacacacacagagagcgctGTGGTGAAAGGCCTGATACCGGGGGGGTACTACACATTTTATGTCAACGCCAAAGTGGAGGACGAGTCCATTGAGGGAGACCCACTGAACATCTCCTCCTACACCA

Function

NR:

description
uncharacterized protein LOC110531825

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615266.2 False 1917 mRNA 0.49 6 25525371 25532692
TU895266 True 527 TUCP 0.54 2 25527673 25532277

Neighbor

gene id symbol gene type direction distance location
LOC110531824 LOC106577554 coding upstream 1854 25508544 ~ 25523517 (+)
LOC110531823 ybx2a coding upstream 74257 25446153 ~ 25451114 (+)
LOC110531819 LOC106577555 coding upstream 91554 25426398 ~ 25433817 (+)
LOC110531818 LOC106577557 coding upstream 107263 25411771 ~ 25418108 (+)
LOC110531817 LOC106577558 coding upstream 114985 25399509 ~ 25410386 (+)
LOC118966181 NA coding downstream 8289 25540981 ~ 25542036 (+)
LOC118966182 NA coding downstream 14413 25547105 ~ 25547900 (+)
zbtb4 LOC106577551 coding downstream 71069 25603761 ~ 25629568 (+)
shbg LOC100135850 coding downstream 102990 25635682 ~ 25641068 (+)
LOC110531830 LOC106577548 coding downstream 120571 25653263 ~ 25662373 (+)
G786068 NA non-coding upstream 38726 25486412 ~ 25486645 (+)
LOC110531811 LOC106577563 non-coding upstream 188003 25323999 ~ 25339758 (+)
G786005 NA non-coding upstream 204242 25320871 ~ 25321129 (+)
G786004 NA non-coding upstream 204690 25320393 ~ 25320681 (+)
G786089 NA non-coding downstream 4832 25537524 ~ 25543652 (+)
G786109 LOC106577552 non-coding downstream 41503 25574195 ~ 25577299 (+)
G786133 NA non-coding downstream 87385 25620077 ~ 25620295 (+)
G786134 NA non-coding downstream 109120 25641812 ~ 25642049 (+)
LOC110531788 LOC106577570 other upstream 573275 24872772 ~ 24952098 (+)
G785138 NA other upstream 942494 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1438045 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1686257 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1721234 23802151 ~ 23804811 (+)
G786091 NA other downstream 12539 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 180305 25712997 ~ 25742909 (+)
G786218 NA other downstream 425392 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 880420 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1846640 27379332 ~ 27379664 (+)
LOC118936682 NA coding downstream 153 25532430 ~ 25536173 (+)

Expression


Co-expression Network