Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118966182 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 25547105 ~ 25547900 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: receptor-type tyrosine-protein phosphatase eta-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005053449.1 | False | 429 | mRNA | 0.44 | 2 | 25547105 | 25547900 |
| TU895280 | True | 238 | lncRNA | 0.45 | 2 | 25547172 | 25547776 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966181 | NA | coding | upstream | 5069 | 25540981 ~ 25542036 (+) |
| LOC118936682 | NA | coding | upstream | 10932 | 25532430 ~ 25536173 (+) |
| LOC110531825 | LOC106577732 | coding | upstream | 14413 | 25525371 ~ 25532692 (+) |
| LOC110531824 | LOC106577554 | coding | upstream | 23588 | 25508544 ~ 25523517 (+) |
| LOC110531823 | ybx2a | coding | upstream | 95991 | 25446153 ~ 25451114 (+) |
| zbtb4 | LOC106577551 | coding | downstream | 55861 | 25603761 ~ 25629568 (+) |
| shbg | LOC100135850 | coding | downstream | 87782 | 25635682 ~ 25641068 (+) |
| LOC110531830 | LOC106577548 | coding | downstream | 105363 | 25653263 ~ 25662373 (+) |
| LOC110531832 | LOC106577546 | coding | downstream | 116578 | 25664478 ~ 25678818 (+) |
| LOC110531831 | LOC106577545 | coding | downstream | 132379 | 25680279 ~ 25712960 (+) |
| G786089 | NA | non-coding | upstream | 3453 | 25537524 ~ 25543652 (+) |
| G786068 | NA | non-coding | upstream | 60460 | 25486412 ~ 25486645 (+) |
| LOC110531817 | LOC106577558 | non-coding | upstream | 136725 | 25399509 ~ 25410386 (+) |
| LOC110531811 | LOC106577563 | non-coding | upstream | 209737 | 25323999 ~ 25339758 (+) |
| G786005 | NA | non-coding | upstream | 225976 | 25320871 ~ 25321129 (+) |
| G786109 | LOC106577552 | non-coding | downstream | 26295 | 25574195 ~ 25577299 (+) |
| G786133 | NA | non-coding | downstream | 72177 | 25620077 ~ 25620295 (+) |
| G786134 | NA | non-coding | downstream | 93912 | 25641812 ~ 25642049 (+) |
| G786166 | NA | non-coding | downstream | 196400 | 25744300 ~ 25744526 (+) |
| G786091 | NA | other | upstream | 138 | 25545231 ~ 25546967 (+) |
| LOC110531788 | LOC106577570 | other | upstream | 595009 | 24872772 ~ 24952098 (+) |
| G785138 | NA | other | upstream | 964228 | 24582387 ~ 24582877 (+) |
| hacd4 | hacd4 | other | upstream | 1459779 | 24077880 ~ 24087340 (+) |
| G785962 | LOC105020693 | other | downstream | 165097 | 25712997 ~ 25742909 (+) |
| G786218 | NA | other | downstream | 410184 | 25874527 ~ 25958867 (+) |
| G786496 | LOC106577539 | other | downstream | 865212 | 26413112 ~ 26413532 (+) |
| G787022 | LOC106577527 | other | downstream | 1831432 | 27379332 ~ 27379664 (+) |
| taf6l | taf6l | other | downstream | 1937894 | 27480038 ~ 27487523 (+) |
