LOC110531826 (LOC106577553)


Basic Information

Item Value
gene id LOC110531826
gene name LOC106577553
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25554016 ~ 25564891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615267.2
CCTCAGCATGTAACAAAAACAGTAGATGAGCAGGGTTTGCTGTCCAGTcttaacaccaccaccaccacgaccgCGCACCAGCCCGACCTACATGCATAGGGACTGAGGATGGAAACGTTCAAGATGAAGAGCATTCTGAAGGTGTCTAAGCTTAACTCCCAGCTGAAGTTGGAGAGCTCTACCCAGAGTCAATCCATTGGGGCGGTGCGCTGGAACCTTCCTGAAGAGGACCTCCAGGCCCACAGCTCAGCCCCTACCAGCCCCCGCAAGAGCAGTGCCCCCTCCACACATCGCTCATTGCAACACCCTCATCAGAATGGCATGAAGAACCTGCGCAGTCTGCAGGAATGTGTCCACTTCATCAACCATTGGAAGGAGCAGGTGGCCCAAGTCTGCAAGAGTGGCAGTGATGCGGGGAAGGGCACCAGTAAAGGAGAGACCCCGGTGGAACTGAAAACAGAACGCAGTCTGGAAGAGAGCAGGAAACTCATTGTGCTGTGGGCCAATGAGCTCAACAGCGTCGACAAGCTGGCGAAGGCTAGGCCCTGGGTGCAGGAGagatgtgaggaggaggaggaagaagaaaacaAGGATGGCGAGATGGATCCCGATGAGGAAGTGCAGCAGAGGATCATGGAGTGGGCCAAGGAGCTACAGAGCGcctcagagCGTTGTGGGGTGCAGAGCAATGAGCTAGGCAATGTTCTGCGTCTGCTGGGTCTGAGGAAGAAGAGACTGATCAACCTCCTGCCCTTACTGGAGTTCATTACTTGGTCACTGCTCAAGGAGGACTGCAAGGGTGGCATTTCTCCGCTGTGGCTGTCAGCGAAGCAGTGCACCTGGAAGGCAGGCACTCCAAGATACATCCCTAACTCAGTGTGGAACTGGATGATCAGTGCATCAGccgatgtgaccTTTGACCCCATGACCAACCACCTGTGGCTCCAGCTCTCAGATGACCACCGCAAGGTCCAGGAGGGCATATCTGAGTCCAATCTGCCCTTCAGTTCCCAGCGCTTCGACGCCTGGCCTGGCGTGCTGGGCTGGGAGGGATACGCCTCCGGACGGCACTACTGGGAAGTCGACATAGCCAACAACGGCTACTGGCGGGTCGGCCTGACCACGGCGAGTGCCGAACGCCAGGGCCGCTTCCCCATGAGCCCGCAGACTGGCTACTGGACCCTGTGGCGCAGCATGCACCAGTTCTACGCCTGTACCAAGCCTGAGACGCCCCTGCCCCTGGGTCTGGTGGCCCGCCGGATGGGGATCTATCTAGACTACGAGGAAGGACAGATCTCCTTCTACAACGCAGAGACCAAGACCCACATCTATACATTCACAGGCAAGTTCAAGGAGAAGCTGTACCCGGTGTTTGCCCCGCTGGACGGGCGCTCACTCATCACCATCATCTCGCCACACAAGGTCTCTACACTTTGAAGACATCACAGGTCTTTGGTTAAGAGATTCTCCCCAACATAAGCTGACTACAGATCTGGTTTTCCTCCGCCTTTCAATCACTGGCTTATTTGGACTTGGACAACCAGGTGTGTGGAGTGGACTCTGGTTAATCAATAAGATTCATTGATCAATAAAGTACCAAGAATAAGAGAAAACCATTGGAGAAGAGTTTGAGCAGTTGACACTTTGACCCGCAAAGCCTTGGGTTGAGGATGGGTTTGCCCTGTTTTGACAACAGTTGGCCTTGACACTTCTGTATGGATCTTAAGAGCTATATGGGAAGAAGCAAATAGGCAACTTCATACcctaaaataaaacaaatgaatttGACAAGCTAGATTTAAACAGTACAtgtctgaaccccccccccccccccctcgttttAATACGTAAAAAAACaactaaatactgtatataaattGCATTATAATACTGAAACAGCTAGCTAGATGGAAGATGAGAAATGTATACTGAGGAAATCTAACTACAATATATCTATATATTGCAGTGTATCTATTtacctatatacagtatctatacctTTATGTCTTcatatatttacacactttcaTAATATGTatacagtcccttcagaaagtattcacaccccttgactttttccacattttgttgtgttatcgcctgaatttaaaatgattaCATTTCGATTTGTCACTGGCCAActcacaatacaacacaatgtcaaaatggaattatgtttttagaaatgtgtacaaattaataaaaaatgaaacgcttgagtcaa

Function

NR:

description
butyrophilin subfamily 1 member A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615267.2 True 2224 mRNA 0.50 9 25554016 25564891

Neighbor

gene id symbol gene type direction distance location
LOC110531822 LOC100136445 coding downstream 69795 25451118 ~ 25484221 (-)
LOC110531820 LOC106608670 coding downstream 109765 25433815 ~ 25444251 (-)
LOC118966020 NA coding downstream 142387 25409559 ~ 25411629 (-)
LOC110531813 LOC106577559 coding downstream 176830 25368192 ~ 25377186 (-)
LOC110531812 LOC106577560 coding downstream 188267 25338581 ~ 25365749 (-)
LOC110531827 LOC106577552 coding upstream 5725 25570616 ~ 25582248 (-)
polr2a LOC106577550 coding upstream 21639 25586530 ~ 25603298 (-)
LOC110531833 LOC105020693 coding upstream 148080 25712971 ~ 25742721 (-)
LOC110531837 cssa07h11orf68 coding upstream 219042 25783933 ~ 25785181 (-)
LOC110531840 LOC106577539 coding upstream 301099 25865990 ~ 26900452 (-)
G787303 NA non-coding downstream 67777 25485979 ~ 25486239 (-)
G787302 NA non-coding downstream 69365 25484394 ~ 25484651 (-)
G787281 NA non-coding downstream 105329 25447811 ~ 25448687 (-)
G787265 NA non-coding downstream 132994 25420720 ~ 25421022 (-)
G787172 LOC106577557 non-coding downstream 136035 25411943 ~ 25417981 (-)
G787405 NA non-coding upstream 5092 25569983 ~ 25570293 (-)
G787421 NA non-coding upstream 67218 25632109 ~ 25632375 (-)
G787313 NA non-coding upstream 70738 25635629 ~ 25641117 (-)
G787424 NA non-coding upstream 79419 25644310 ~ 25644593 (-)
G787427 NA non-coding upstream 83342 25648233 ~ 25648605 (-)
G787386 NA other downstream 30504 25522038 ~ 25619623 (-)
trmt44 trmt44 other downstream 250325 25294038 ~ 25309252 (-)
G787211 NA other downstream 262545 25290915 ~ 25291471 (-)
G785578 NA other downstream 588742 24963072 ~ 24965274 (-)
G787350 NA other upstream 310544 25875435 ~ 25894404 (-)
G787331 NA other upstream 317845 25882736 ~ 25930052 (-)
G787346 NA other upstream 360473 25925364 ~ 25955174 (-)
G788162 NA other upstream 1357021 26921912 ~ 26922402 (-)

Expression


Co-expression Network