LOC110531827 (LOC106577552)


Basic Information

Item Value
gene id LOC110531827
gene name LOC106577552
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25570616 ~ 25582248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987680.1
CTAACCAGGTGAGGAGCACCAACACACTCCTCCTCACCCAGGCCCCCTCAGTCCACTCACACCCACAGTCACGAGCGGCCATCAGGCAGAATGGAGCTGGAGACAGGTGCGGTGCCGGAGCTAGCCGAGGGGATCATGCAAATGTTCCCCTGCCAGGCAGCGCCGGGCCAGTTTGGACCAGAGACACGGGAGCCGGGGCTGAAGGTGTGGCGGGTGGAGAAGATGAAGGCGGTGCTGCTGGAGCCGGCTGAGGTGGGGGCTTTCTTCAACGGAGACTCCTACCTGGTGCTGGAGCACAGGGGGGACCAGGGGGCAGACCTGCACATGTGGATAGgTGAGAAATCATCTCGTGACGAGCAGGTGGCGTGTGCCATGCTGGCTACCCAGCTGGACAACTTCCTGGGTGGTGACCCCATCCAGCATCGCCAGATCCAGGGCTACGAGGCCCCAGAGTTCATGAACCTCTTCCCCAGGGGGGTCAGCTACAAGGACGGTGGTGTGGAGTCGGGTTTCAGGCGACCCCAGGGTGGGTCAGGGCCGGTTCACAGGCTGTACCAGATCAAAGGGAAGCGCAACATCCGTGCCAAGGAGGTGGAGCTGAGCTGGGAGAGCTTCAACAAGGGAGACTGCTTCATCCTGGACCTGGGAGAgACCATATTTTCGTGGATAGGCTCGCAGGCCAACATGTTTGAGAAGCAGAAGTCGCGTGAGATTGCTAGCCTGATCCGCGACACTGAGAGACATGGTAAAGCACGCATCACTGACATCAGTGAGGGAGAGGAGCCGCCGGAGATGCTCAAGGTGCTGGGACCAATGCTAGAGCTGGCAGAGAGCACTCCAGAAGAGGACAGTCAAGCAGACGTCTCCAACTCCGCCTCCCTCTACAAGGTGTCCGATGCGACAGGTAAGATGAAGCTGACCAATGTCTCTGAAAAAAGCCCATTTGCCAAGGACCTTCTGGTGCGTGACGACTGCTTTATTCTAGACAACGGGGCCAATGGAAAGATCTTCGTCTGGAAAGGTATGGGAGCCAATGCAGAGGAGAAAAGGGAGGCCTTGAAAATGGCAGATGACTTCATCCAACAGATGAACTACCCCAGGATGAAAACACAGGTGGAGATTCTACCACAGGGGAGGGAGACGATCATCTTCAAGCAGTTCTTCAAGAACTGGAACTAAACTACAAGGGTTTAACTGTTAACTGTTGCACTCCTAAAATATAATGAAATAACAACCTGGAATATAAAAGGTCTCAATCAATGTTTAAAAGTCTTCTCATAAGGAGTGAAAACATCTCAAATTCAAGAAcatattgttgtttttttatatgtgtttacttatatgtatatatttgtaaGGTACTGTACTCACAGACAACTGTTTAGTCATGCATAGGTCAAATGAACTCAAAATAATGAGAGCCTTTATAATGATGTCACAGCAAATGGATCCCTAAGTCACTACTACTGGTTCTGACTGGGAAGGAAAACATGTGCTCACTGGTTTTATTGGGCTCTGTTAGTGGTCTTATTTAAAGCCAAGATGATATTCCACAAAGCCTATAAAGTTAATTTGTTTGCTtttgtctttttttgtttttttttgtgttgttttttacatttgtttatgAATTACAGGGACATATTCAAATAAGACCTTTAGTAGGCTACAGTTTATGAAAATAAATGGAAACTGAAAGAACCCGTACAGCAGGTGGCTTCGTCAGCTCTCACTATGACATTGTCTGcgttccaaaatggcaccctattccctatatagtgcactacttttgaccagggtccataaggtcaaaagtagtgcactatgtagggaatagggtgccttttgggacacatCCATTAAGTGACTATGTTTTTATTACCGGAACCTATTCTCCCCTGTTTGTTTTCCTCACTGGAATAATCAATCCATTTTGACCTTTCACCTGCATGGTGAGAAGTTCCTTGGTTGTTTCACTTTTTCCATCACTGGATAAACACTTAACGGGTTAACCCCACCTACACCTGAGGGAATGAACCTTCCATAAACGTTAACCTCCAGGGGCTACTGTTGGGGTCGTCAGAGATAGCCTATGTTTATGTTCTTAAAGTGTATATCTAGCTAATGTCTATCGTCTTTGACTGGGGACTGATTGTCTGTCCTGAAGTGGAGGTGACCGTTGGTTTCTGTTGCAACCTGGAGATTATTAGGCTAATATTGGCCTTCATTCCTTTGACGTGTGCGATTAACACTCAAAACTGTAAAAGGACCCCCTTCCAATACATGCACCCACACACTATTACGGTTCTTTTAAGGCCCACACAGACTGTACGATTTTGCCATCCCCAAACAACATTTCCACATCTTGGGCAAATTCTTAGGTTGTAAACGATTGTCGGACATCTTGACTcattcagtgtgacagggtctaggtctgacGATTAAATACCACTACTTGTGGTTTTGGGCGCCGACAAAATTCTGTCAGTGTCTGAAATGTTGAGCCTTTATCATGTGGTGTGACTGGTGTTAGGAGCCTTTCCCGGTgactaacaaacaggaacaccTCCGGCACTGAGTATGCACACAATAATACAATTGTTGTGAATAGTCCGATTATTAAAATAGTTTGATCTAAACAttga
>XM_036987683.1
gagagtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatggacGTGTTTTCTTTGCATGAGTGCATTTCCTTTCTTTGTCTGCACCGACGTGTCCTGATCCATTTCCTCCTCACCTAAAGTTGCAAGAATGTTCCCCTGCCAGGCAGCGCCGGGCCAGTTTGGACCAGAGACACGGGAGCCGGGGCTGAAGGTGTGGCGGGTGGAGAAGATGAAGGCGGTGCTGCTGGAGCCGGCTGAGGTGGGGGCTTTCTTCAACGGAGACTCCTACCTGGTGCTGGAGCACAGGGGGGACCAGGGGGCAGACCTGCACATGTGGATAGgTGAGAAATCATCTCGTGACGAGCAGGTGGCGTGTGCCATGCTGGCTACCCAGCTGGACAACTTCCTGGGTGGTGACCCCATCCAGCATCGCCAGATCCAGGGCTACGAGGCCCCAGAGTTCATGAACCTCTTCCCCAGGGGGGTCAGCTACAAGGACGGTGGTGTGGAGTCGGGTTTCAGGCGACCCCAGGGTGGGTCAGGGCCGGTTCACAGGCTGTACCAGATCAAAGGGAAGCGCAACATCCGTGCCAAGGAGGTGGAGCTGAGCTGGGAGAGCTTCAACAAGGGAGACTGCTTCATCCTGGACCTGGGAGAgACCATATTTTCGTGGATAGGCTCGCAGGCCAACATGTTTGAGAAGCAGAAGTCGCGTGAGATTGCTAGCCTGATCCGCGACACTGAGAGACATGGTAAAGCACGCATCACTGACATCAGTGAGGGAGAGGAGCCGCCGGAGATGCTCAAGGTGCTGGGACCAATGCTAGAGCTGGCAGAGAGCACTCCAGAAGAGGACAGTCAAGCAGACGTCTCCAACTCCGCCTCCCTCTACAAGGTGTCCGATGCGACAGGTAAGATGAAGCTGACCAATGTCTCTGAAAAAAGCCCATTTGCCAAGGACCTTCTGGTGCGTGACGACTGCTTTATTCTAGACAACGGGGCCAATGGAAAGATCTTCGTCTGGAAAGGTATGGGAGCCAATGCAGAGGAGAAAAGGGAGGCCTTGAAAATGGCAGATGACTTCATCCAACAGATGAACTACCCCAGGATGAAAACACAGGTGGAGATTCTACCACAGGGGAGGGAGACGATCATCTTCAAGCAGTTCTTCAAGAACTGGAACTAAACTACAAGGGTTTAACTGTTAACTGTTGCACTCCTAAAATATAATGAAATAACAACCTGGAATATAAAAGGTCTCAATCAATGTTTAAAAGTCTTCTCATAAGGAGTGAAAACATCTCAAATTCAAGAAcatattgttgtttttttatatgtgtttacttatatgtatatatttgtaaGGTACTGTACTCACAGACAACTGTTTAGTCATGCATAGGTCAAATGAACTCAAAATAATGAGAGCCTTTATAATGATGTCACAGCAAATGGATCCCTAAGTCACTACTACTGGTTCTGACTGGGAAGGAAAACATGTGCTCACTGGTTTTATTGGGCTCTGTTAGTGGTCTTATTTAAAGCCAAGATGATATTCCACAAAGCCTATAAAGTTAATTTGTTTGCTtttgtctttttttgtttttttttgtgttgttttttacatttgtttatgAATTACAGGGACATATTCAAATAAGACCTTTAGTAGGCTACAGTTTATGAAAATAAATGGAAACTGAAAGAACCCGTACAGCAGGTGGCTTCGTCAGCTCTCACTATGACATTGTCTGcgttccaaaatggcaccctattccctatatagtgcactacttttgaccagggtccataaggtcaaaagtagtgcactatgtagggaatagggtgccttttgggacacatCCATTAAGTGACTATGTTTTTATTACCGGAACCTATTCTCCCCTGTTTGTTTTCCTCACTGGAATAATCAATCCATTTTGACCTTTCACCTGCATGGTGAGAAGTTCCTTGGTTGTTTCACTTTTTCCATCACTGGATAAACACTTAACGGGTTAACCCCACCTACACCTGAGGGAATGAACCTTCCATAAACGTTAACCTCCAGGGGCTACTGTTGGGGTCGTCAGAGATAGCCTATGTTTATGTTCTTAAAGTGTATATCTAGCTAATGTCTATCGTCTTTGACTGGGGACTGATTGTCTGTCCTGAAGTGGAGGTGACCGTTGGTTTCTGTTGCAACCTGGAGATTATTAGGCTAATATTGGCCTTCATTCCTTTGACGTGTGCGATTAACACTCAAAACTGTAAAAGGACCCCCTTCCAATACATGCACCCACACACTATTACGGTTCTTTTAAGGCCCACACAGACTGTACGATTTTGCCATCCCCAAACAACATTTCCACATCTTGGGCAAATTCTTAGGTTGTAAACGATTGTCGGACATCTTGACTcattcagtgtgacagggtctaggtctgacGATTAAATACCACTACTTGTGGTTTTGGGCGCCGACAAAATTCTGTCAGTGTCTGAAATGTTGAGCCTTTATCATGTGGTGTGACTGGTGTTAGGAGCCTTTCCCGGTgactaacaaacaggaacaccTCCGGCACTGAGTATGCACACAATAATACAATTGTTGTGAATAGTCCGATTATTAAAATAGTTTGATCTAAACAttga

Function

NR:

description
macrophage-capping protein-like isoform X1

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K10368 CAPG; capping protein (actin filament), gelsolin-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987680.1 False 2645 mRNA 0.47 9 25570616 25580847
XM_036987683.1 True 2655 mRNA 0.46 9 25570616 25582248

Neighbor

gene id symbol gene type direction distance location
LOC110531826 LOC106577553 coding downstream 5725 25554016 ~ 25564891 (-)
LOC110531822 LOC100136445 coding downstream 86395 25451118 ~ 25484221 (-)
LOC110531820 LOC106608670 coding downstream 126365 25433815 ~ 25444251 (-)
LOC118966020 NA coding downstream 158987 25409559 ~ 25411629 (-)
LOC110531813 LOC106577559 coding downstream 193430 25368192 ~ 25377186 (-)
polr2a LOC106577550 coding upstream 4282 25586530 ~ 25603298 (-)
LOC110531833 LOC105020693 coding upstream 130723 25712971 ~ 25742721 (-)
LOC110531837 cssa07h11orf68 coding upstream 201685 25783933 ~ 25785181 (-)
LOC110531840 LOC106577539 coding upstream 283742 25865990 ~ 26900452 (-)
trnaa-ugc-32 NA coding upstream 710581 26292829 ~ 26292904 (-)
G787405 NA non-coding downstream 323 25569983 ~ 25570293 (-)
G787303 NA non-coding downstream 84377 25485979 ~ 25486239 (-)
G787302 NA non-coding downstream 85965 25484394 ~ 25484651 (-)
G787281 NA non-coding downstream 121929 25447811 ~ 25448687 (-)
G787265 NA non-coding downstream 149594 25420720 ~ 25421022 (-)
G787421 NA non-coding upstream 49861 25632109 ~ 25632375 (-)
G787313 NA non-coding upstream 53381 25635629 ~ 25641117 (-)
G787424 NA non-coding upstream 62062 25644310 ~ 25644593 (-)
G787427 NA non-coding upstream 65985 25648233 ~ 25648605 (-)
G787432 NA non-coding upstream 78491 25660739 ~ 25662079 (-)
G787386 NA other downstream 47104 25522038 ~ 25619623 (-)
LOC110531812 LOC106577560 other downstream 212800 25338581 ~ 25365749 (-)
trmt44 trmt44 other downstream 266925 25294038 ~ 25309252 (-)
G787211 NA other downstream 279145 25290915 ~ 25291471 (-)
G785578 NA other downstream 605342 24963072 ~ 24965274 (-)
G787350 NA other upstream 293187 25875435 ~ 25894404 (-)
G787331 NA other upstream 300488 25882736 ~ 25930052 (-)
G787346 NA other upstream 343116 25925364 ~ 25955174 (-)
G788162 NA other upstream 1339664 26921912 ~ 26922402 (-)

Expression


Co-expression Network