LOC110531830 (LOC106577548)


Basic Information

Item Value
gene id LOC110531830
gene name LOC106577548
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25653263 ~ 25662373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615273.2
CAGGTGCACCTGTAACaatgatgctgtttaatcagcttcttgttgtgccacacttgtcaggggggtggattatcttggcaaaaggcAATTATCTTGCTCactaaacagggatgtaaacacatgtgtgcaacattttagagaaataagccttTTGTGCATATGTAATATTTCTAGGATattgtatttcagctcatgaaaccaacactttacatgttgcgtttatattgttgTGTACAAAACACTAAGAACACCTTTGTAGTATTGAGTTGTCCCTCAATGAGGGACTTTTATTTTTAAAAACGAACAGCAAATTCccctattgtggctagcttcacataggtgCTAGCTAGCACTATCACCTTCAAACTACTTAGCACGTTCACATACTTGCCATTGTATAAAGAAAGAGACAACCATGGCGAATTGTGACTATTTACAAACTCAGCTAACCTCTGTTTTGAACTCGCTTGTTAAAATTGCGGTCGTGGAACTACTGCGAATTGTGGAGGATAGCGCCGTTGAACTTCGTCTGGAGGTGTCCAAGAGTAAATTTGAGAACGAAGCACTGAAAATTGAGAACGAGTCTAACAAAAACAAGTTGCAGAGTTTGGAAGCAGAACTGTGGACAGCGGGAAATCGACCATGTTCCATGTGTTATCGTTGTGTTGGAACTCCAGCTCGCGGTAAAGGTGGATGCGTCAGCCCCAAAATAGATGGAGATGCTGCTGGTCCTCCTAATTCTTCAGAGGAGGACAATGCATCATCATGGTTGCAACAATCTGCTCATACCATGGACGAGACTACAGCAGCCATGGAGAGGGATGGGATTCAAATCGTTGTCATTAAGAACGAAGCGGGGCATGAAGGCACACACAGGAAGAAGGACCCACAGGCTGGAATTTCAACAGAAGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACAGAGATGCTGTCAAGGAGGACTCTGCAGGACCATCGGTGACCCATCGACAGGTCAAGACTGTTTCGGCTCAGAAAAGGCGGAGTGTTTGTGTAAAGAAGTCCGTCATAGAAGATGAACCTGCTGACTCATCAAATGCTGGTACCCAGCACCAGAACACCACTGAATCCTGTGATGTGGAGAAAAGTTGTGCATTTGGAAGTTTTGAACCAGAAAGTTGTTTGAACTTTGAAGAAAACCACTTCTTGACTTCACCAGTCAACATCATGGTCCCAAAATGTGTGAAGCTACCAGGTGCAGCAGCTGTCATGGACACCCAATTAGACAAGTCCATGGACTTTGACAACATGAACAACTCCggaagaaagaagagagggagaaaaaatgGCCCCTGTAAAGGCAATGTAAATTACTGTTTTGTATGTGGGGAGCCCCAATCGAAGATCTCCCGCCACTTGAAACAGCACGAGAAGGAAAATGCTGAAATTGCTTATGTCTTAAGTCTTGACATAGCTTCAAGACAGAGGAAAGTGTTGCTGGAGAAACTGAGGAACAAGGGAAATTTCCAACACAACACTAACGTCGTAAATAAGGGATCCGGGTGTCTCAAAGTAAAAAGGAAACCCAAACCGAATAGTGGCGCGAAGAGATTTGAACCTTGTCTTTACTGTAAAGGTATGTTCATTTGGCAAGATGTGCGGAGGCACATGGGAAGATGCCCTTGTAGACCTGAGGGGGGAGATAAAAACCAAGAGCATCATTTTGGCAAGAAGCAGTACTTACAGAGCTGCTACACTGGACGAGTGAGCAGCATGTTTAATAAAATTGATGTGCAGCTCACACCTGGGGGGGGGGATTAACTAGCACTTGTATTTTTGCCTCGCCACACTGTCTTTGCCCTCGTTTGGGTGCTAGCAAGCATGCTAGGCATCAACAGCCAATCCATTAGGGTCTAGAAGCTATAGTGAGATTAAATTGGTGCTgcgtaatcaatcaatcaaatgtatttattaagcccTTTTTATACATCAGCaggtgtcacaaagtgctatacagaagcCCTACCCAAAACCCCagatagcaagcaatgcagaagcacggtggctaggaaaaactccctagaaaggcaggaacctaggaaaaaaccaggctctgaggggtggccagtcccctTTTGTCTGTGCCGGGTGGCGAttattaaggccagattgttctccaaaatgttcaaacgttcatagatgacccgcagggtcagataataatgacagtggttgtagagggtgcaacaggtcagtgtaTTAAGAGTAAATGTCACGACTTTTCATAGCTGGGCATTCAGAGGTCGAAATAgaaggtgcggtagagagagggagagttgaaaacaggaggtctgggacaaggtagcaaatccgttgaacaggtcagggtttcaaccaccaacttaccatcctgagacaaggtcgagtatagcccacaaagatctccaccgcCCGAGGAGACGACAAACctgacaggaagatcacgtcagtgactcaacccacctAGGGACGGCAGGGAAGAGCACTaaaaagccagtgactcagcccccgtaatagggtcagaggcagagaaccTAATGGAGAGGGGAACGGGACGAGacgagtcttcaataaagacaaaGGTGGAGACCGGGTCTGCGTCTCTCACGTGGATaggtagaccattccataaaaatgtatctcaataggagaaagccctgcctccagctgtttgcttagaaattataaGGACAAtaaggcctgcgtcttgtgaccgtagcatttgtaggtatgtacggcaggaccaaaccttgaaatcagccttcAAATACTCAGGCTAAGAGCTTTTGCATTAAGTTAATCTTTCTCAAATTAAGGTCCCGCTCTTTTCACGCAAACATTGCCCAACGCTCCCTGCCCAATTTCACTTATCTTCCACCCAAAATGAATGGCTTTCCGTAGTTTAATCGTCCACATCGTCTTTAGTTAAAAAAGTACCGTGAGAGCGTTTGATAAAGTGGCTCAAGCGTTCTCCAGGATACATTCTGTAGCAGCTAAATGTCTACAATGACGGTCTACTTTCGTTACACCAACGCTACGCCCCCAGTATAGCAGCTCTGTTAGGGGCTAAACTCATAAACCAGGTTGGAACCATAATGTGTAATACTCTATAAATTATCCCAATAGTGTTCAGAGTGGACTGTCagattttgttgttttgttcttttAAAGAATTTCCCGATCTAGCCTCGGTTTAAATTCTCCTCCTCTCGACAGAATGAGATTTGGGTTTCGGAggcgtgctttggtgtgtttgtttgtgtgtgttttgggaaGCGTTTGTACTTCCACCCTGCCAAAACATTAGTCACTCACCTTTCTAGATAACGTGAAACCGTGTTACCAGGTGTTGCCTTGAAGTAGATAGCAAGCTTTCCAACTTCTTTcgccaattagcttcagccggCAGGTGTGTGACCGTGGCAGTTGGTTTGAATTTATTTGGTTAGCCTACCTGTGAGGCTAGCAGGAGTTAAAGTTCCTAGTCACTGCTGGTTTGGAGATGACATAGCCTAATACAGACAGAAGCATGTCTGTTCTACAAAATGTATTCCCAAATAAATGTATTCTCTAATA
>XM_021615274.2
ttgtgccacacttgtcaggggggtggattatcttggcaaaaggcAATTATCTTGCTCactaaacagggatgtaaacacatgtgtgcaacattttagagaaataagccttTTGTGCATATGTAATATTTCTAGGATattgtatttcagctcatgaaaccaacactttacatgttgcgtttatattgttgTGTACAAAACACTAAGAACACCTTTGTAGTATTGAGTTGTCCCTCAATGAGGGACTTTTATTTTTAAAAACGAACAGCAAATTCccctattgtggctagcttcacataggtgCTAGCTAGCACTATCACCTTCAAACTACTTAGCACGTTCACATACTTGCCATTGTATAAAGAAAGAGACAACCATGGCGAATTGTGACTATTTACAAACTCAGCTAACCTCTGTTTTGAACTCGCTTGTTAAAATTGCGGTCGTGGAACTACTGCGAATTGTGGAGGATAGCGCCGTTGAACTTCGTCTGGAGGTGTCCAAGAGTAAATTTGAGAACGAAGCACTGAAAATTGAGAACGAGTCTAACAAAAACAAGTTGCAGAGTTTGGAAGCAGAACTGTGGACAGCGGGAAATCGACCATGTTCCATGTGTTATCGTTGTGTTGGAACTCCAGCTCGCGGTAAAGGTGGATGCGTCAGCCCCAAAATAGATGGAGATGCTGCTGGTCCTCCTAATTCTTCAGAGGAGGACAATGCATCATCATGGTTGCAACAATCTGCTCATACCATGGACGAGACTACAGCAGCCATGGAGAGGGATGGGATTCAAATCGTTGTCATTAAGAACGAAGCGGGGCATGAAGGCACACACAGGAAGAAGGACCCACAGGCTGGAATTTCAACAGAAGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACAGAGATGCTGTCAAGGAGGACTCTGCAGGACCATCGGTGACCCATCGACAGTGGCTTACACCTGGGCAGTCAAGCTCTGTGGACTTACGAAATCTGCGCCGGCGCCGAAGAGTAAGAACTCAACCGCACCCGCAAAGGAGAGGGACCTACCTCAGGTACACCCCCGAGCAAAGGGCCAAGATTGCGCGGATGTGCATGGAGGTGGGTGCACAGATGGCCGCAGCCATGATGTCTGAGGAATTGGGAAGACGCATCAGCCCCAACACTGTGAGGTCCATGAGGATCAGCTACGAACAGACGGTCGAAAGCATGGGCGTCCAGAAAGTGGAAGACCTACCCCATTTGAGGCCATTCAGAACAGACATGTTTGATGAGGAGATTACTCGCTTCGTAATGGTGAGGAAAAGAGCTGGAGGTCAGGTTAGCCCATCCATGCTGATGGTAGCCACACGAGACATTGTGATGCGCAGAAACCCAGAGATGCTGGCAGAGAATGGCGGTCATATCCTAATCAGCACAAATTGGGCCCGTTGTTGGCTCCGGCGGTTGGCAGGAAATAGAATCACGTCAAAGAGGTAGTGAAGATATTGCAGGAGTCCTCTACTGTTAGGACAGTGTTTTTACATTAATGATAATTCCTCGTGTTTGTGTGTTGAAGTTAAGGAAGACGTAACATTCCGTGTTGACTGGTGTCCAGTGTGGTTAGGAGAATCTGCATGCAGTATGTAACTGGATGCCATTGTGCTGTGTTCTCTGAAGTTAGTGTTGGCAGTTCATATCTTTAGTATTTACATTTTATGAATATTCAAACTTTTTGAAGCGAACTATTCAGATAAATGCTTTTCAAATTTTGTAAGGGGATGGATGGGTTTAGTGTTATAACAATGTTATGTAACTTGGCTTATGTGTTGTATGAGGTAACCACATACGCTTTCGTTTGCTTTTTAtgtatattgatgtgtgtgtatatagtgtaattgatgttaTCATGCAAGGTATCATGCAAGGCTCAGCTGCAAAAGAGACCATGATAtcagcatgactccctgcttaaataaaagttaaattaaATCAAGTTGTttatgaaaataaatatatatacacacctcaAAATCCTTAGTGCCTCTTAT
>TU895153
GGGTGGCGAttattaaggccagattgttctccaaaatgttcaaacgttcatagatgacccgcagggtcagataataatgacagtggttgtagagggtgcaacaggtcagtgtaTTAAGAGTAAATGTCACGACTTTTCATAGCTGGGCATTCAGAGGTCGAAATAgaaggtgcggtagagagagggagagttgaaaacaggaggtctgggacaaggtagcaaatccgttgaacaggtcagggtttcaaccaccaacttaccatcctgagacaaggtcgagtatagcccacaaagatctccaccgcCCGAGGAGACGACAAACctgacaggaagatcacgtcagtgactcaacccacctAGGGACGGCAGGGAAGAGCACTaaaaagccagtgactcagcccccgtaatagggtcagaggcagagaaccTAATGGAGAGGGGAACGGGACGAGacgagtcttcaataaagacaaaGGTGGAGACCGGGTCTGCGTCTCTCACGTGGATaggtagaccattccataaaaatgtatctcaataggagaaagccctgcctccagctgtttgcttagaaattataaGGACAAtaaggcctgcgtcttgtgaccgtagcatttgtaggtatgtacggcaggaccaaaccttgaaatcagccttcAAATACTCAGGCTAAGAGCTTTTGCATTAAGTTAATCTTTCTCAAATTAAGGTCCCGCTCTTTTCACGCAAACATTGCCCAACGCTCCCTGCCCAATTTCACTTATCTTCCACCCAAAATGAATGGCTTTCCGTAGTTTAATCGTCCACATCGTCTTTAGTTAAAAAAGTACCGTGAGAGCGTTTGATAAAGTGGCTCAAGCGTTCTCCAGGATACATTCTGTAGCAGCTAAATGTCTACAATGACGGTCTACTTTCGTTACACCAACGCTACGCCCCCAGTATAGCAGCTCTGTTAGGGGCTAAACTCATAAACCAGGTTGGAACCATAATGTGTAATACTCTATAAATTATCCCAATAGTGTTCAGAGTGGACTGTCagattttgttgttttgttcttttAAAGAATTTCCCGATCTAGCCTCGGTTTAAATTCTCCTCCTCTCGACAGAATGAGATTTGGGTTTCGGAggcgtgctttggtgtgtttgtttgtgtgtgttttgggaaGCGTTTGTACTTCCACCCTGCCAAAACATTAGTCACTCACCTTTCTAGATAACGTGAAACCGTGTTACCAGGTGTTGCCTTGAAGTAGATAGCAAGCTTTCCAACTTCTTTcgccaattagcttcagccggCAGGTGTGTGACCGTGGCAGTTGGTTTGAATTTATTTGGTTAGCCTACCTGTGAGGCTAGCAGGAGTTAAAGTTCCTAGTCACTGCTGGTTTGGAGATGACATAGCCTAATACAGACAGAAGCATGTCTGTTCTACAAAATGTATTCCCAAATAAATGTATTCTCTAATATTTTATTTTCTGTTACGCTGTGTGTACTGAACTGACATGCATGATTGTTGATGACACTGATGTTCAGATGAAGCGAATTAAATAGTCTATAATGTGCACCAAAACAGCGCTTAACTCAAACAGCGGTGTGTAGCCTACCGTAGCTGGTAATTCAAAGCTTATACTTTATCACTCAGTATGTAACTTTCCAGTGCTACTATTTTTGCTGTAATGTTATTAAAATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615273.2 False 3631 mRNA 0.45 6 25653263 25662149
XM_021615274.2 False 2067 mRNA 0.44 5 25653305 25659084
TU895153 True 1693 lncRNA 0.44 1 25660681 25662373

Neighbor

gene id symbol gene type direction distance location
shbg LOC100135850 coding upstream 12195 25635682 ~ 25641068 (+)
zbtb4 LOC106577551 coding upstream 23695 25603761 ~ 25629568 (+)
LOC118966182 NA coding upstream 105363 25547105 ~ 25547900 (+)
LOC118966181 NA coding upstream 111227 25540981 ~ 25542036 (+)
LOC118936682 NA coding upstream 117090 25532430 ~ 25536173 (+)
LOC110531832 LOC106577546 coding downstream 2329 25664478 ~ 25678818 (+)
LOC110531831 LOC106577545 coding downstream 18130 25680279 ~ 25712960 (+)
LOC110531834 LOC106577543 coding downstream 87753 25749902 ~ 25758055 (+)
LOC110531838 drap1 coding downstream 123947 25786096 ~ 25791195 (+)
LOC110531839 LOC106577540 coding downstream 130617 25792766 ~ 25832287 (+)
G786134 NA non-coding upstream 11214 25641812 ~ 25642049 (+)
G786133 NA non-coding upstream 32968 25620077 ~ 25620295 (+)
G786109 LOC106577552 non-coding upstream 75964 25574195 ~ 25577299 (+)
G786089 NA non-coding upstream 109611 25537524 ~ 25543652 (+)
G786166 NA non-coding downstream 82151 25744300 ~ 25744526 (+)
G785958 NA non-coding downstream 97325 25759474 ~ 25762167 (+)
G786171 NA non-coding downstream 102119 25764268 ~ 25764485 (+)
G786172 NA non-coding downstream 102555 25764704 ~ 25764984 (+)
G786174 NA non-coding downstream 104494 25766643 ~ 25766843 (+)
G786091 NA other upstream 106296 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 120986 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 701167 24872772 ~ 24952098 (+)
G785138 NA other upstream 1070386 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1565937 24077880 ~ 24087340 (+)
G785962 LOC105020693 other downstream 50848 25712997 ~ 25742909 (+)
G786218 NA other downstream 295935 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 750963 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1717183 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1823645 27480038 ~ 27487523 (+)

Expression


Co-expression Network