LOC110531832 (LOC106577546)


Basic Information

Item Value
gene id LOC110531832
gene name LOC106577546
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25664478 ~ 25678818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615277.2
GATTTGCGAGATTAGGAGGAAAAAAACTTTAATTTGGCCCCAGACAAGCGATATAGACAAGCAACAATTAGAAATAGTTGATGAATATTGAGGTTCCAGTCGAGGAACATTGAGAATTTAAAACATAATTTGAGAGACATTTGTAGCACATTAAGTAAACATAATATTTTGACTAGTGACATCACAGTTGCTTGTTGTATAGTTGAAATGATGGCCATTACATTTTAAATCAATCTCAAATTAAACGAATTCAATTCGAAATGAATTTTGTATTCGCACAACACGATACTTATTGCGTGACCTCGTGATAAATCTCGTCAATAGCTCCGCCCCAAATAGGAAGTCGTGCACAACCATTGTTCAACCATTTGTTTTGCCAGGGAAAAGGTAAACGTGGAGGATACGAGTCATTTAGATCAAGTCTAAACATTCTCGTTTTCTCAACAAAGTTAAAGATTTACTAGCAAATGACAATGGAGAATGCTGCCCACCTCCAAAGTCAGCTAACCTCTCTCATGAACGCGGTAATGAGGGCAGCGGTCGTGGAAATAGTCAGACTTGTAGAGGGCAGCGCCGTGGCCCTTCGCGACGAGTTGTCCAAGAGTAAACGGGAGAACGAAGCACTGAAAGCCGAGAACGAGTCGAATAAAAATAAGATGCAAAATTTGGAAGCAAAACTAGCTGCGGAGCAGCGTTCTCTTGGTTGTCATGTAGCCGAAGCTGGTGGCGGTAAGATCAATTTGTCCAAACAAAGGAAGATGTTAAGGCTTGTGCAGAGAAGACCCGTGCAAGGCTGCAATCTTTGGAGCCAGCAGGCCAATCCCAGGCTACAGCTTTCAATAAAGGGGAAGGCCTAAAAGTTGTTGCCATGGAGAAGGATGGAATACAAGTACTCCGCATCAAGAAGGAAATAAATGAAGGCACAGAACATGACACACCATGTCCAATGACCGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGGAAAAGAAATAGGAGACCGCAGCGACGGAACAGAGGAGAAAGAAACTCCAGGACCATCAATGACCCAGCATCAGAAAAGGAGAATTGTCCATTATGCAGATGATTGGATTGAAGAGGACTGGATTAAAGAGGAGGGCGTACCAGTGGAAACCAATGAAAGTATTGATACTTCAGTCATCCCATTCATGGCGGACAGTGATTTGTCAGAGTATGGAGACGGGCTATCCACACTTTGCAGCCAAGCCAATTACATGGATGCCATGACAGAGAGCTTGAAAGGCAGATTAGGGTCTGTTAGGGATAAACAAACCACACGATTAAAAACTGGATTGTTGGGGAATACTAATGCCAAGAAGAAACAGAGAATAATTGAACTAGGCTGGATGGACTTCAATGAAAAGGGGAAAGAGTTCAAGCAAGTCAGGACAGTAAACGGTGGCGGTACAAGACACCTCTATGTTGACAAGAAGAAATCTGTTGAGGAAATCAAAGTAATGGCAGAGGAAATGTTTTTCCCAAATGGACTTTCAAAGAAAAACACACAACTGGAGGACTATCATCGAGAAATCAGATGGAGGTACTCTCAAGTAAACAATTCAAGCACTGTGGAAGAACTTTATGAGGAAACCAAAGTGGGATGTCTACGACTCTATCTTTGCACAAAGGCACACAGTGTCCGCGATTTTGGGGTTGTAGTCAGTGCCGCCTCTGCCTATACACAGAGTACGCGCTGCGCGTAGGGCCCCGCCTATTCACCGTAAACGTTGCGCGTAGAACACCACCGATTGGTCTGAAAATCAGGGCTGTTGCTCTGCCGCGTTCCACCCCAGATATCTATAGTttaaactgacggattttgatgggggTATCTTTATCACGTTAGTTAGATTGCATCAAATAGATTCAACTGCCTAATTCTTGAGGACACAATTACCATATATTTTTGATTCATTAGATCATAATGTATATACAATAATTTAGCGTGGAAATGTTTACTCATTGTATTAAAACTGGGACTTGCTTTGTTTGTA
>XM_021615279.2
ACCTCGTGATAAATCTCGTCAATAGCTCCGCCCCAAATAGGAAGTCGTGCACAACCATTGTTCAACCATTTGTTTTGCCAGGGAAAAGGTAAACGTGGAGGATACGAGTCATTTAGATCAAGTCTAAACATTCTCGTTTTCTCAACAAAGTTAAAGATTTACTAGCAAATGACAATGGAGAATGCTGCCCACCTCCAAAGTCAGCTAACCTCTCTCATGAACGCGGTAATGAGGGCAGCGGTCGTGGAAATAGTCAGACTTGTAGAGGGCAGCGCCGTGGCCCTTCGCGACGAGTTGTCCAAGAGTAAACGGGAGAACGAAGCACTGAAAGCCGAGAACGAGTCGAATAAAAATAAGATGCAAAATTTGGAAGCAAAACTAGCTGCGGAGCAGCGTTCTCTTGGTTGTCATGTAGCCGAAGCTGGTGGCGATCAATTTGTCCAAACAAAGGAAGATGTTAAGGCTTGTGCAGAGAAGACCCGTGCAAGGCTGCAATCTTTGGAGCCAGCAGGCCAATCCCAGGCTACAGCTTTCAATAAAGGGGAAGGCCTAAAAGTTGTTGCCATGGAGAAGGATGGAATACAAGTACTCCGCATCAAGAAGGAAATAAATGAAGGCACAGAACATGACACACCATGTCCAATGACCGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGGAAAAGAAATAGGAGACCGCAGCGACGGAACAGAGGAGAAAGAAACTCCAGGACCATCAATGACCCAGCATCAGAACGGAGGTCCACTTCAGTGCAGTAAGCTGAGTCCATCCACTCCTATCTTCAAAGTCTTCTGTGATCCTGAACGAGACACGTATCCCAACTAATGACTTAAGAGGGAATTTCTGAATTCTGTTCTCCTTGTCACTGACTGGTCATGACGGATAGATGACAATGTTAAAGATCCTTGTCTTTATTTACTGGTTGGCCCACGGGACCTCCTATAAAACTGTCTCAAGGGGGGTGGACAGTAGTCGCGTGCCACGTCAGGGTCAAGATCCCCAGTGCACCGCACCCCCAACAATGTCCAGGTGAACATCCCCTCCCCACCATCAACTTCCAAGGGGTCTGTGACCACATGCCGCTTCATCAATATCTTCGCGGGGCTGCCTCGGTCTATGAGCAACTTGAAGGTGCTCAGGCATAGTCCCCTGCAGAAAAGTGCCCTGTACCCTCCCCCCAGATGCTTCCTCCTGGGCAACGGCGGGTACCCCTGTCTACAGACGCCTGTGTGCCTCATCACACCATATCCAAAGTCTGATCAGAACCCAGAGCACGACCAGTTTAACCAGAACCACGCCAAGGCTCTCTTCCCCCATCGAGAGGACCTTCAACATCATGAGAAAGCACTGGCACATCTTCCTCTAGCCCCTCAAGCCCCACCCATTCTTCATCCCGAAAGTGCTTGCAATGTGCACTGTGCTGCATAACATCTGCCTCCGGTCCGGGGACGTGCTGGAGCCAGTAAAGATTGAGGACAGAAACGAGGTGACTGAGGCTTTGAAGAAGTGGCTAGTGTCGAATGAGACCAGCAGAAAGGCATTGAGGGACAGTTTGGCTTAACAGATCTCTACAATGAAATGAATGGCCTCAGTGAATGATGGGCAAGGGGCATCTGCACCGGCAAACATGATGGCAGTGCAACAATAATTGGCTTACAACATAGTGGTGATGGAAATGGATTACTTCAGGAGCCAATAAGCGGTGGTGGAACTGTCGCTGCCAACCTTTCACGTGTTTCGTGAAACAATTTAGCAAAGTCACCTCTCCTATTCTAATGCTTGTATACAgtaccatgtacagtgccttgcgaaagtattcggcccccttgaactttgcaacctt
>XM_021615276.2
TCTCGTCAATAGCTCCGCCCCAAATAGGAAGTCGTGCACAACCATTGTTCAACCATTTGTTTTGCCAGGGAAAAGGTAAACGTGGAGGATACGAGTCATTTAGATCAAGTCTAAACATTCTCGTTTTCTCAACAAAGTTAAAGATTTACTAGCAAATGACAATGGAGAATGCTGCCCACCTCCAAAGTCAGCTAACCTCTCTCATGAACGCGGTAATGAGGGCAGCGGTCGTGGAAATAGTCAGACTTGTAGAGGGCAGCGCCGTGGCCCTTCGCGACGAGTTGTCCAAGAGTAAACGGGAGAACGAAGCACTGAAAGCCGAGAACGAGTCGAATAAAAATAAGATGCAAAATTTGGAAGCAAAACTAGCTGCGGAGCAGCGTTCTCTTGGTTGTCATGTAGCCGAAGCTGGTGGCGATCAATTTGTCCAAACAAAGGAAGATGTTAAGGCTTGTGCAGAGAAGACCCGTGCAAGGCTGCAATCTTTGGAGCCAGCAGGCCAATCCCAGGCTACAGCTTTCAATAAAGGGGAAGGCCTAAAAGTTGTTGCCATGGAGAAGGATGGAATACAAGTACTCCGCATCAAGAAGGAAATAAATGAAGGCACAGAACATGACACACCATGTCCAATGACCGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGGAAAAGAAATAGGAGACCGCAGCGACGGAACAGAGGAGAAAGAAACTCCAGGACCATCAATGACCCAGCATCAGAAAAGGAGAATTGTCCATTATGCAGATGATTGGATTGAAGAGGACTGGATTAAAGAGGAGGGCGTACCAGTGGAAACCAATGAAAGTATTGATACTTCAGTCATCCCATTCATGGCGGACAGTGATTTGTCAGAGTATGGAGACGGGCTATCCACACTTTGCAGCCAAGCCAATTACATGGATGCCATGACAGAGAGCTTGAAAGGCAGATTAGGGTCTGTTAGGGATAAACAAACCACACGATTAAAAACTGGATTGTTGGGGAATACTAATGCCAAGAAGAAACAGAGAATAATTGAACTAGGCTGGATGGACTTCAATGAAAAGGGGAAAGAGTTCAAGCAAGTCAGGACAGTAAACGGTGGCGGTACAAGACACCTCTATGTTGACAAGAAGAAATCTGTTGAGGAAATCAAAGTAATGGCAGAGGAAATGTTTTTCCCAAATGGACTTTCAAAGAAAAACACACAACTGGAGGACTATCATCGAGAAATCAGATGGAGGTACTCTCAAGTAAACAATTCAAGCACTGTGGAAGAACTTTATGAGGAAACCAAAGTGGGATGTCTACGACTCTATCTTTGCACAAAGGCACACAGTGTCCGCGATTTTGGGGTTGTAGTCAGTGCCGCCTCTGCCTATACACAGAGTACGCGCTGCGCGTAGGGCCCCGCCTATTCACCGTAAACGTTGCGCGTAGAACACCACCGATTGGTCTGAAAATCAGGGCTGTTGCTCTGCCGCGTTCCACCCCAGATATCTATAGTttaaactgacggattttgatgggggTATCTTTATCACGTTAGTTAGATTGCATCAAATAGATTCAACTGCCTAATTCTTGAGGACACAATTACCATATATTTTTGATTCATTAGATCATAATGTATATACAATAATTTAGCGTGGAAATGTTTACTCATTGTATTAAAACTGGGACTTGCTTTGTTTGTA
>XM_021615278.2
TCAATAGCTCCGCCCCAAATAGGAAGTCGTGCACAACCATTGTTCAACCATTTGTTTTGCCAGGGAAAAGGTAAACGTGGAGGATACGAGTCATTTAGATCAAGTCTAAACATTCTCGTTTTCTCAACAAAGTTAAAGATTTACTAGCAAATGACAATGGAGAATGCTGCCCACCTCCAAAGTCAGCTAACCTCTCTCATGAACGCGGTAATGAGGGCAGCGGTCGTGGAAATAGTCAGACTTGTAGAGGGCAGCGCCGTGGCCCTTCGCGACGAGTTGTCCAAGAGTAAACGGGAGAACGAAGCACTGAAAGCCGAGAACGAGTCGAATAAAAATAAGATGCAAAATTTGGAAGCAAAACTAGCTGCGGAGCAGCGTTCTCTTGGTTGTCATGTAGCCGAAGCTGGTGGCGATCAATTTGTCCAAACAAAGGAAGATGTTAAGGCTTGTGCAGAGAAGACCCGTGCAAGGCTGCAATCTTTGGAGCCAGCAGGCCAATCCCAGGCTACAGCTTTCAATAAAGGGGAAGGCCTAAAAGTTGTTGCCATGGAGAAGGATGGAATACAAGTACTCCGCATCAAGAAGGAAATAAATGAAGGCACAGAACATGACACACCATGTCCAATGACCGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGGAAAAGAAATAGGAGACCGCAGCGACGGAACAGAGGAGAAAGAAACTCCAGGACCATCAATGACCCAGCATCAGattgcagccGGTAGCAACAAGAAGAAGCGCTGCGACgtgtgtggacccaagaaggacaggaagacacagtacacatgcgtcaagtgcaagaaatacatttgcagcacacacacagtaaaactctgtccctcatgtggtgTGTAGACCGGCCTTAATTTGTGTACAATGCGGCTCATTTATCATTTCCATAAAATACTGTTAAATTTGTCCTtccaatttgttcagttcaaagcaTTAAACATCGATAGTGATG

Function

NR:

description
uncharacterized protein LOC110531832 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615277.2 False 2053 mRNA 0.43 6 25664478 25678818
XM_021615279.2 False 1903 mRNA 0.50 5 25664777 25669455
XM_021615276.2 False 1736 mRNA 0.45 6 25664790 25678818
XM_021615278.2 True 1027 mRNA 0.47 5 25664795 25673852

Neighbor

gene id symbol gene type direction distance location
LOC110531830 LOC106577548 coding upstream 2329 25653263 ~ 25662373 (+)
shbg LOC100135850 coding upstream 23410 25635682 ~ 25641068 (+)
zbtb4 LOC106577551 coding upstream 34910 25603761 ~ 25629568 (+)
LOC118966182 NA coding upstream 116578 25547105 ~ 25547900 (+)
LOC118966181 NA coding upstream 122442 25540981 ~ 25542036 (+)
LOC110531831 LOC106577545 coding downstream 1461 25680279 ~ 25712960 (+)
LOC110531834 LOC106577543 coding downstream 71084 25749902 ~ 25758055 (+)
LOC110531838 drap1 coding downstream 107278 25786096 ~ 25791195 (+)
LOC110531839 LOC106577540 coding downstream 113948 25792766 ~ 25832287 (+)
alpk1 alpk1 coding downstream 1517703 27196521 ~ 27213187 (+)
G786134 NA non-coding upstream 22429 25641812 ~ 25642049 (+)
G786133 NA non-coding upstream 44183 25620077 ~ 25620295 (+)
G786109 LOC106577552 non-coding upstream 87179 25574195 ~ 25577299 (+)
G786166 NA non-coding downstream 65482 25744300 ~ 25744526 (+)
G785958 NA non-coding downstream 80656 25759474 ~ 25762167 (+)
G786171 NA non-coding downstream 85450 25764268 ~ 25764485 (+)
G786172 NA non-coding downstream 85886 25764704 ~ 25764984 (+)
G786174 NA non-coding downstream 87825 25766643 ~ 25766843 (+)
G786091 NA other upstream 117511 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 132201 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 712382 24872772 ~ 24952098 (+)
G785138 NA other upstream 1081601 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1577152 24077880 ~ 24087340 (+)
G785962 LOC105020693 other downstream 34179 25712997 ~ 25742909 (+)
G786218 NA other downstream 279266 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 734294 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1700514 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1806976 27480038 ~ 27487523 (+)

Expression


Co-expression Network