LOC110531834 (LOC106577543)


Basic Information

Item Value
gene id LOC110531834
gene name LOC106577543
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25749902 ~ 25758055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615283.2
ATTTGGGTATTTCCGCACCATTTGAGGGGGAGGTGGTAAGTTGCATTGGAGTCTCAAAGTTGGGGGTGGCGAAAGAACAAGCTGTCAAGAGAAGGTGACACGGTGTTTCAGGGACAAACAACCTATAGGGAAAAGGCTATTCGATTAATCACGGTGGCCGACGTTGGAAATGGATGGAATTTATGGATGGGAACAGCCCCCTTTGAACCAAGgTAATCCCTTCATTGAGATTATTGAACAGCCCAAGCAGAGGGGCATGAGGTTCAGGTACAAGTGTGAGGGGCGCTCTGCTGGAAGCACCCCGGGAGAGAAGAGCAATGACACCACCAAGACACACCCCGCCATTAAGGTGCACAACTACAATGGCCCCCTGCGTGTCCGCGTCTCgttggtgaccaagaacccaccTCACAAGCCCCACCCCCACGAACTGGTGGGGAAAGACTGCAAACATGGTTACTATGAGGCAGACCTGCAGGAGAGACGAGTACACAGTTTTCAGAACCTGGGCATTCAGTGTGTGAAGAAAAAGGATGTGGCTGAGGCAGTTTCCTGTAGGCTACAGACCCAAAACAACCCCTTCAACATTCCTGAGGCGAACATGTGGGAGGAGTTTGACCTAAATGCAGTGAGGCTGTGTTTCCAGGCCTCGATCACTCTGCCTACCGGGGAACTCTGCCCTCTGGAGCCCGTGGTGTCCCAGCCCATCTACGACAACAGAGCACCCAACACAGCAGAACTGAAGATCTGTCGAGTGAACAGAAACTCTGGAAGCTGCATAGGGGGGGATGAGATCTTCTTACTTTGTGACAAAGTGCAAAAAGAGGACATCGAGGTGCGGTTCTTCCAGGGCTCGTGGGAGGGGAAGGGCACCTTCTCCCAGGCGGACGTACACAGGCAGGTGGCCATTGTGTTCTGCACCCCGCCCTACTGCGACACCAACCTGACCGAGCCAATCCGAGTGAAGATGCAGCTCCGCAGGCCCTCGGATCGTGAGGTCAGCGAGCCAATGGACTTCCAGTTCCTGCCCTCCGACCCAGATGAATATAGACTAATGGAGAAGCGAAAACGGACAGAGGGAATGTTACAGAATCTGAAGCTGGGGTCCCTGATGTCGGGAACCATGCCAGCAGAGACGAGGCCGTTCAACATTGCCAGGAGAACAGTCACCGCCAAGCCAGCAGCTAGCCAGCCTGTGATGAACCCAGTGGTGCCCCCTAGTGCCTTCTCTGTGAAGCCCCAGCCCTACTACAACGGCCCCCAGCCAGGCAAGTTGTTTCAAACCCAGCCCAAATCAGAAGCCTCCTCCACCACAGCCGAGACCTGGAAGTTCCTCAACAGCCTGACTCTGGACTCCCAGCCCAAAGCCACCCCCGTGGCCAGCTTCACCACCAACCCCCAGGCCTCTGCATCCACAGCCGCCTCCTCGCAGGCCTTTCCCACCGTAAACCTGTTGGACTTCAACGGATTCGCTTTCCACAACTTTGCTTGTCCCCAGGAGCCGGTGAGTGCAGCCCCTACACCAGAGCCCACCTCTACCTTCGGGGTCCAAGGCTCCCAGTTCAAGGTGGATGAGGAGCTACCTGAATTCCCCAGCTTTTCCGAGGCACAAGCGCCAGGGACTCTAGATAGTATAAACATTGAAGAATTCCAGGCTATGCTGGGCCAGAGTTGTCTGGCTGGAGAAGGGCCAAAGAGCAGTGAGGCTTCAGCCCCTCAGGCACCCTGCCACTTACCCTCCACCAACACTGTGGCCAACAACAACGCGGCCCAGAACCAAGCAGACCCAGCCAACCACCACACCGGCTGTGGCGGCAGCACCTGGATGAACTACCCCAACAGCATTGTCAGCCTGCTCCACAACGAGGGCATGATGGACAGTTCCCCCAGCAACGCCAGCCAGCCGGCCGCCCTTGACGACCTGGACGTCTTAAGCTCCATGGACGAAGACCGTCTCATGTCCATCCTGAACAGTGGCAACCAATACAGTTTTGTGCCCGGACATCAGACCTAAGAGACAACCGTGTGATTTGACTGACATGTTTACTGACATGACATAATCCCCCTGGTAGACTACTTTTATCTGGGCCCGGTTGCATAAAACAACTTAAGTTAATTTCCCTCTTGTATTTTCCTGTAACTTTAAGTCAGTTGCACAAGATGTGTGCCCGTTTAAATTAAGTACAAAAGTTAAGGGTGTCCACGAGGTCCCTTAACTGCCTCATTATGTATGGTTGTCAATTGAAACAGCATGTATAGAGGTGAATGTTGATTTCATCTGCTCTGGTTCCAAAAGGAAAACGTCAACCAGCTAGCTACTTAGCTAAACAATGGAAGGTGCACGATCCATGGCTAcaaagctagttagctacagctACAGtagggtaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgaggcctgtaattttcatcataggtacacttcaact
>XM_021615284.2
gTAATCCCTTCATTGAGATTATTGAACAGCCCAAGCAGAGGGGCATGAGGTTCAGGTACAAGTGTGAGGGGCGCTCTGCTGGAAGCACCCCGGGAGAGAAGAGCAATGACACCACCAAGACACACCCCGCCATTAAGAGATTTGAAGGTGATAAGGAAGTGGTGGAGATTCTAAGGTGAGTGATGATACTCATCCTGCTAACCTGGCTGGTCCCATGCAGGTGCACAACTACAATGGCCCCCTGCGTGTCCGCGTCTCgttggtgaccaagaacccaccTCACAAGCCCCACCCCCACGAACTGGTGGGGAAAGACTGCAAACATGGTTACTATGAGGCAGACCTGCAGGAGAGACGAGTACACAGTTTTCAGAACCTGGGCATTCAGTGTGTGAAGAAAAAGGATGTGGCTGAGGCAGTTTCCTGTAGGCTACAGACCCAAAACAACCCCTTCAACATTCCTGAGGCGAACATGTGGGAGGAGTTTGACCTAAATGCAGTGAGGCTGTGTTTCCAGGCCTCGATCACTCTGCCTACCGGGGAACTCTGCCCTCTGGAGCCCGTGGTGTCCCAGCCCATCTACGACAACAGAGCACCCAACACAGCAGAACTGAAGATCTGTCGAGTGAACAGAAACTCTGGAAGCTGCATAGGGGGGGATGAGATCTTCTTACTTTGTGACAAAGTGCAAAAAGAGGACATCGAGGTGCGGTTCTTCCAGGGCTCGTGGGAGGGGAAGGGCACCTTCTCCCAGGCGGACGTACACAGGCAGGTGGCCATTGTGTTCTGCACCCCGCCCTACTGCGACACCAACCTGACCGAGCCAATCCGAGTGAAGATGCAGCTCCGCAGGCCCTCGGATCGTGAGGTCAGCGAGCCAATGGACTTCCAGTTCCTGCCCTCCGACCCAGATGAATATAGACTAATGGAGAAGCGAAAACGGACAGAGGGAATGTTACAGAATCTGAAGCTGGGGTCCCTGATGTCGGGAACCATGCCAGCAGAGACGAGGCCGTTCAACATTGCCAGGAGAACAGTCACCGCCAAGCCAGCAGCTAGCCAGCCTGTGATGAACCCAGTGGTGCCCCCTAGTGCCTTCTCTGTGAAGCCCCAGCCCTACTACAACGGCCCCCAGCCAGGCAAGTTGTTTCAAACCCAGCCCAAATCAGAAGCCTCCTCCACCACAGCCGAGACCTGGAAGTTCCTCAACAGCCTGACTCTGGACTCCCAGCCCAAAGCCACCCCCGTGGCCAGCTTCACCACCAACCCCCAGGCCTCTGCATCCACAGCCGCCTCCTCGCAGGCCTTTCCCACCGTAAACCTGTTGGACTTCAACGGATTCGCTTTCCACAACTTTGCTTGTCCCCAGGAGCCGGTGAGTGCAGCCCCTACACCAGAGCCCACCTCTACCTTCGGGGTCCAAGGCTCCCAGTTCAAGGTGGATGAGGAGCTACCTGAATTCCCCAGCTTTTCCGAGGCACAAGCGCCAGGGACTCTAGATAGTATAAACATTGAAGAATTCCAGGCTATGCTGGGCCAGAGTTGTCTGGCTGGAGAAGGGCCAAAGAGCAGTGAGGCTTCAGCCCCTCAGGCACCCTGCCACTTACCCTCCACCAACACTGTGGCCAACAACAACGCGGCCCAGAACCAAGCAGACCCAGCCAACCACCACACCGGCTGTGGCGGCAGCACCTGGATGAACTACCCCAACAGCATTGTCAGCCTGCTCCACAACGAGGGCATGATGGACAGTTCCCCCAGCAACGCCAGCCAGCCGGCCGCCCTTGACGACCTGGACGTCTTAAGCTCCATGGACGAAGACCGTCTCATGTCCATCCTGAACAGTGGCAACCAATACAGTTTTGTGCCCGGACATCAGACCTAAGAGACAACCGTGTGATTTGACTGACATGTTTACTGACATGACATAATCCCCCTGGTAGACTACTTTTATCTGGGCCCGGTTGCATAAAACAACTTAAGTTAATTTCCCTCTTGTATTTTCCTGTAACTTTAAGTCAGTTGCACAAGATGTGTGCCCGTTTAAATTAAGTACAAAAGTTAAGGGTGTCCACGAGGTCCCTTAACTGCCTCATTATGTATGGTTGTCAATTGAAACAGCATGTATAGAGGTGAATGTTGATTTCATCTGCTCTGGTTCCAAAAGGAAAACGTCAACCAGCTAGCTACTTAGCTAAACAATGGAAGGTGCACGATCCATGGCTAcaaagctagttagctacagctACAGtagggtaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgaggcctgtaattttcatcataggtacacttcaact

Function

NR:

description
putative transcription factor p65 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615283.2 False 2475 mRNA 0.53 11 25749902 25758055
XM_021615284.2 True 2346 mRNA 0.53 9 25752241 25758055

Neighbor

gene id symbol gene type direction distance location
LOC110531831 LOC106577545 coding upstream 36942 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 71084 25664478 ~ 25678818 (+)
LOC110531830 LOC106577548 coding upstream 87753 25653263 ~ 25662373 (+)
shbg LOC100135850 coding upstream 108834 25635682 ~ 25641068 (+)
zbtb4 LOC106577551 coding upstream 120334 25603761 ~ 25629568 (+)
LOC110531838 drap1 coding downstream 28041 25786096 ~ 25791195 (+)
LOC110531839 LOC106577540 coding downstream 34711 25792766 ~ 25832287 (+)
alpk1 alpk1 coding downstream 1438466 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 1456064 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 1498548 27256603 ~ 27267492 (+)
G786166 NA non-coding upstream 5376 25744300 ~ 25744526 (+)
G786134 NA non-coding upstream 107853 25641812 ~ 25642049 (+)
G786133 NA non-coding upstream 129607 25620077 ~ 25620295 (+)
G786109 LOC106577552 non-coding upstream 172603 25574195 ~ 25577299 (+)
G785958 NA non-coding downstream 1419 25759474 ~ 25762167 (+)
G786171 NA non-coding downstream 6213 25764268 ~ 25764485 (+)
G786172 NA non-coding downstream 6649 25764704 ~ 25764984 (+)
G786174 NA non-coding downstream 8588 25766643 ~ 25766843 (+)
G786183 NA non-coding downstream 16756 25774811 ~ 25775218 (+)
G785962 LOC105020693 other upstream 6993 25712997 ~ 25742909 (+)
G786091 NA other upstream 202935 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 217625 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 797806 24872772 ~ 24952098 (+)
G785138 NA other upstream 1167025 24582387 ~ 24582877 (+)
G786218 NA other downstream 200029 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 655057 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1621277 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1727739 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 3581926 29248127 ~ 29342203 (+)

Expression


Co-expression Network