alpk1 (alpk1)


Basic Information

Item Value
gene id alpk1
gene name alpk1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27196521 ~ 27213187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987710.1
agactcgcaATGCCCGTGTGTTTTTAAACTAGAGATGCCCACGTGATGTCAATCAATCTTAAATTCAGAATTTAAACCAATGAAATTGCAGTACTCACAAATGCCCATCCTCCAAAGTTCTGCCCAACCAGGAAGTTATAAGCCGACGGTGTCAGAGAGGACTGACGAGAGGTTACTAAAAGGCACCATGGACAGCAAGGAGGTGGGAGCCATGCTAGAGGAGTGTCACAGGGCTGCGTCTGCAGCAGGTCTGGTGGTTGTGGAGCCCACAGAGGAAGTCAAGCTCAACTTCCAAAGATACAGAGAGTCCCTGCCAGTTGAACTGAGCATGCTACTGCAGGAGGCAGTGGCAATGAGGTGGCCATTTGTACCAGAGAAGTGGCAGTACACGCAGTCCGTGACTTCCCAGGACAAAGTCAACTTGAAGGACGTCATTAGTCTGCATCTACCACAGCTACTGGCTCTGCTGAAGGCGTCCATCTTGGCCAGGGAACCCCAGTGGGCGGCAAGTGTGGTCTTCCTGATGGATCGGTTCCTGTATTGGACAGATGAGTCCAGCCGGCTGCTGAAGATCACCAAGCTCCTCCACAGACACTACCCAGGAACCCCCATCGCCCCCCAGCTGGTCATACGACAGGCCAGGGTCTATCTCAATGACGGTAAACTCCAGAAGGCAGAGTACATACTGAGCAGTCTCATCAACACTAGTGGAGCAACAGGTTGCTggatatatcagtctgacagcgATAGGACTCTTATCCAGGCGGTCAGTGTGCAAGTGCGTGGACAGGTTCTGCAGAAACTGGGACTGTGGCTGGAGGCTGCTGAGCTGATCTGGACCTCCCTGGTCGGCTATTACGCTCTTCCTCAACCTGATAAAAAGGGCATTGGAACGTCCCTTGGGATTCTGGCCAACATATTGGTGTCTATGAATGATGGCGACTTCCATGCATTTAAGACCAATCCGGGCATTGACTTGTGTTTCCTTGAGAACGATGGCCACCGTCTCCTCTCAGCAGCTGAGGCAGCTAAAATGGCGGTGGTGTACAGCCAGTATGCCTCACTGTACGTGTTAACCAATGTGgTCACCCAAGGCACCTGTCTGTTGTCCTACAGTTTCTCAGTAGAATGCCCCCCCTCGGACAAACACTCCTTCCTCCTCCAGGCCAAGGAAGCCTTTGAGATCGGCCTACTTACCAAAACAGGGGGGGACATGGTCACCAGCAAACAGGAGCTCCACACATTCCTCAAGGCAGCCTACTCTCTGACTGTCAGTCACAAGTGGCTGGGCACCCCTCAGAAGACAGTGGACCAGGCCAGATTGGTATGCCGGGAGGCTTTGGAGAAGTTCTATGCCTACTGCCATGCAGACAGCCAACAGAGAGATGCTCTTTGCACTGGAGTTATGAGTCTGATAACCCAAGTGAAGATTCTATTGCGGGTCAATCCATTCTTGAACTCAGACAAGGGGTCGTTTATCCCAGATAGCTATAGAGACGTGGTGGAAGAGCGAGCAGTGCGGTTCACTCTGGATGGTTTCTCCCAGGTGATGGGGAGGTTCAGGCAGTACCACACCTCAGTGTGTGAGGCCTCTGAGGCAAGCTGTAGGAGGAAACATGAAGGCCACCAGGCTGGACTCTGTATAACAGCACTGGGGACCACGGCAACGGCCCCTAACACAGAGTGTGCCACTGAGAACCACAAGCCCCAAAAAGCCACACATAAAGAAGAGTTACACAGAGACAAAGCACCTTTTTGTTTAGCTCCAAGGTTACCTCAGGAACAGGAGCTCTGTACAACTCTGGGTAGCACTGAAGAGCTACCAAGCAATAGCTATAATAAAATGTCCCTCAAATCACTCAGTAGCAGCTTTGGGTCCTCATTTGAAAAAGTATCTTTGAACAGCACTGGTTCTCCCCTCAGCTGTAGTGGCAACAAAGATGGCAGTGTTCCGGATAAGGTAAACATGGAGTATCTGTGCGATCCAAACTGTCTCACCGAGGTTAGTGAAGATGGGTTGGAAAATGGGTCCGAATCTAAAAGCAAGACCAGGAAAAGAGATATCAGAGCAAGTCTCAGTGCTCAGGCAGGATCCAACTCTTCCACCCGGGTCACTTCCTCATCATCCACCCACACCGGAAGTGATGTTGAGCAGTTTGAAATGATCGACGAACAGAGTCTAATCGAGACTGTGGAGACCGAGGAGGAGTGTCGCAGGTGTGGTGCGTCAGTGTCGGTGAGACCTACAGGAGACGGAGTAGTGACTCATCCAGAGTACCAAGACAAGTCGAGGACTTCCTCTTTTAGCTCCATTGGCGACAGCCTCGGCTCCCAGTCATCATGGCAGAAACTATCCCTATCTGACACATCCCGGGAGGCAGCTGCAGTACCACAAATAGGTTCTGCAGCCCCAGCAGCTGTAAATGAACACCGAGGTCCCGCCTCCTCGCAGATAGTTCCGAACTTCACTGTGGATCAAGAAGCAGAAACGGAGGAAGACACTGGATCCCCTCACCCCTTTGGGCCTAACAGTGCTGCAGCGTATCACAGAAGACCTCCACAACTAGGATCTGAGGGCCTCATCCCAGAGCAGTGTCTCTCTACAGAGATAGACAGCTCCTATGAGATGGTGGAGAAAGAGATAGGACACATAGTCCACAACACTGAACCCTGTGCTGGAGAGAAGCAGATTCCCTCTCACCCAAACCACTCATGCTATACCTGTCTAAAGCACGGCATCATGGGTGGTCTAGTGCCTGAGAACCAGTACGTTTTGACAGAGGAGGACTACATCGCCCTCCTGGCTGGGATGTGTCATGGCTGTATGTTAAAGAGACTGCAGAGTGACATGAAATTCAAGCTTGGGAAACAGAAAAGCGCCTACAGTGCTCTCCTTCTGAAGTACTCCAGGGCCTCTGGATTGTGGACGTCCAGAGAGACCTATGTGTACATCGGAGAGCCAATAGGGAAGCAAGGCCAGCAGAGAATAGCATTATGGGTGCAGTTTCTACACCAAGAGGAAAGGCTGAGTAGCTATGTGGGGAAGGAGTACCTAGAACCTAAGGGCATTCAGTTCCACCTGAGTGACGTGGAGAGGCAGATGACGGCCCAGTACTACGTGACAGAGTTTAACAAGAGACTCTACAAGGAGAAAGTGACCGCTCAGATCTTCTTCATCCCTTCAGAAGTGCTACTGATCTTGGAGGGGGATGAGGTGGTGGACTGTGTGACAGTGGAGCCCTACATGCTGGGGGACTTTGTGAAGCTCACCAACAACACTACTAAAGTGGACAAGCGGTTCAAGGCGTCAGAATATGGAATCGCTTTCGGACATTTCACCTACCAGTTCTCTGGATGCCAAGAGGTTGTTGTCGACCTACAAGgGTGGGTGACCGCCAATGGGAAGGGGCTGACGTACCTCACAGACCCTCAGATCCACTCTCTCAGGACCCCTAAAGGTGCCACCAACTTCGCTGAGAGGGGGGTCAGTTATTTCCTAAAGGACCAGCATGGACCAGAATGCAACAGTATCTGTGACCTACTGTCACTGGGCAAACTGCAGTAACATACGTCTTGAAAACAGTGACGTCTACTCCAGATAGAGATGTGTGTTTGCTTGGGGCTCCTTGACAACTCTCGAACAACATAATGTTTTGGCCTAAAATATGTGCATTGCGATCCCCTACTACAATGCACAATGCACATTCTGACCTATTAGACATGGGCTGATCCTGTGGTGAAAACAGCAGTGTAGTGAAGCACATTCGGTAGCATGTGATTTAATTTCTAGAAGTGAGAATTGCCTGCCCCGTTTACCAACCACAACCAGTTCTGTTAAAATCAGGCCGTACTGTATTTTCAATGTACTGTAAATGTTTTTGTGACCCTTGATACCACTCTGGTTTATGTATTTATTACCTAAGGCCTGCGCTCTGTTGTAGCCCACAAAGTTTTATTAAATTGACATTGATCTGTTTTAATTGCTTTTGAATTGATTAAATCGGATCACAGAAATGAGA

Function

symbol description
alpk1 Orthologous to human ALPK1 (alpha kinase 1).

NR:

description
alpha-protein kinase 1

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987710.1 True 4019 mRNA 0.50 14 27196521 27213187

Neighbor

gene id symbol gene type direction distance location
LOC110531839 LOC106577540 coding upstream 1364234 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 1405326 25786096 ~ 25791195 (+)
LOC110531834 LOC106577543 coding upstream 1438466 25749902 ~ 25758055 (+)
LOC110531831 LOC106577545 coding upstream 1483561 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 1517703 25664478 ~ 25678818 (+)
epdl1 LOC106577537 coding downstream 932 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 43416 27256603 ~ 27267492 (+)
LOC110531852 rtn3 coding downstream 127511 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 175704 27388891 ~ 27399023 (+)
LOC110531857 LOC106577522 coding downstream 194114 27407301 ~ 27438764 (+)
G786877 NA non-coding upstream 125577 27070729 ~ 27070944 (+)
G786799 NA non-coding upstream 245531 26950789 ~ 26950990 (+)
G786798 NA non-coding upstream 246043 26950265 ~ 26950478 (+)
G786797 NA non-coding upstream 262312 26933967 ~ 26934209 (+)
G786783 NA non-coding upstream 289880 26906228 ~ 26906641 (+)
G786952 NA non-coding downstream 32383 27245570 ~ 27245845 (+)
G786965 NA non-coding downstream 64591 27277778 ~ 27277986 (+)
G786966 NA non-coding downstream 65500 27278687 ~ 27283799 (+)
G786968 LOC106577532 non-coding downstream 78703 27291890 ~ 27292246 (+)
G786980 NA non-coding downstream 92710 27305897 ~ 27306937 (+)
G786496 LOC106577539 other upstream 782989 26413112 ~ 26413532 (+)
G786218 NA other upstream 1237654 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1453612 25712997 ~ 25742909 (+)
G786091 NA other upstream 1649554 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 1664244 25525371 ~ 25532692 (+)
G787022 LOC106577527 other downstream 166145 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 272607 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 2126794 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 3069488 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4382809 31595996 ~ 31596918 (+)

Expression


Co-expression Network