LOC110531843 (LOC106608596)


Basic Information

Item Value
gene id LOC110531843
gene name LOC106608596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27222066 ~ 27234759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615292.2
CACAGATCTTGTCCCTAGTCGCGTGGCGGGATGCACCAGGTCCCTCTGGACGGAAGGAATATAGAAAGTCCACTTCAAGCTAACCCGATTTAACAGTACCCAGCTTAATTTTTGAATTAGCCAAAAAGCAGGGAACACCTTTTTCAAAGGATTTCACTCCCACTGGGCTCAAATCATCCTTTGCATGACAATCGGTGTGAGGTTCGAACTCGGAGGTCTTCACCACACCTGCTACCACAGGGAAATATCCAGCTGCTGTGCTGGGACCCGGAAGTTTAGAATGAGGTCAGTGAGACAGAGGAAACACAATTCTACGGCTAAAATGGCGCAGGAGCAACAGCAGGAAAcaacacagggagagatggaggCTGGAGGAGTAAACTGTCTTGCTTATGATGAGGCCATTATGGCACAGCAGGACAGAATTCAGCAGGAGaTCGCAACAAGCATCCTTTTagtgtcagacagacaggagcTGTCAGTTTTGCAGAGAGAGTATGCTGCGGAAGACACCATTTATCAGCTCAAGATCAAGGATTTACACAAAAAATACTCATATATTCGTAAGACGCGACCAGACGGGAACTGTTTCTACAGAGCTTTTGGCTTTTCACATCTCGAATCACTGCTCGAAGACAGCAAAGAGCTGCAGAGGTTCAAAGCAGTGGCAGCAAAGAGCAAACTGGACCTGGTAAACCAGGGTTTCACTGAGTTCACCATTGAAGACTTCCACAATACTTTCATGGACCTGTTAGAGCTGTGTGAGAAGCAGCCAGGACTCAGTGAGCTGCTGGGCTCCTTCAGAGACCAGAGCGTGTCAGACTACATCGTGGTGTACCTGCGGTTGCTCACTTCAGGCTACCTGCAGAGGGAGCACGGTTTCTTCCAGCACTTCATCGAGGGGGGACGCTCTGTCAGGGAGTTCTGTCAGCAGGAGGTGGAGCCCATGTCTAAAGAAAGTGACCATATCCACATCATCGCCTTGGCCCAGGCCCTGAACGTGTCCATCCTAGTGGAGTATATGGACCGGGGTGAGGGGGGCACCGTCAACCACCACGTCTTTCCTGAAGGCAGCGAGCCTCGTGTCTTTCTCCTCTATAGACCCGGCCACTACGACATCTTGTACAAATAACTACCTGCTGTTtagaaaatccccccccccccaatgtccCAATGCTGTAGTGGCAGTGGCGAAATACTTCACCTGCCACACTGATGCATACATGTGTGTTTGAAGACTacactgttttttttcttctcaaataCCAATCACATTATACagcccccttctccctcctcgtCACTCAATATATTCCCTTCATCACAGAACAGTGaattaataaaacaaatatttaccAAAAAAATAGCAGTGGCTCCAGATGTTTAGAGTTGTACAGTTTTTATTTTGTGGTTGTAAATGTTACCAACTTGCTTTTTTTTGTTGGATTATTTTTCTTTGTTACACTGCGTTTTATTAAAGGTATTTACATCTTA

Function

NR:

description
ubiquitin thioesterase OTUB1-like

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K09602 OTUB1; ubiquitin thioesterase protein OTUB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615292.2 True 1494 mRNA 0.47 8 27222066 27234759

Neighbor

gene id symbol gene type direction distance location
cskmt LOC106577536 coding downstream 90 27220386 ~ 27221976 (-)
LOC110531842 rasgrp2 coding downstream 26025 27116955 ~ 27196041 (-)
LOC110531840 LOC106577539 coding downstream 321614 25865990 ~ 26900452 (-)
trnaa-ugc-32 NA coding downstream 929162 26292829 ~ 26292904 (-)
LOC110531837 cssa07h11orf68 coding downstream 1436885 25783933 ~ 25785181 (-)
LOC110531846 LOC106577533 coding upstream 12635 27247394 ~ 27271316 (-)
LOC110532979 LOC106577532 coding upstream 43925 27278684 ~ 27292293 (-)
LOC110531849 LOC106577530 coding upstream 61717 27296476 ~ 27305400 (-)
LOC110531850 LOC106577529 coding upstream 71088 27305847 ~ 27327406 (-)
LOC110531851 LOC106577528 coding upstream 92759 27327518 ~ 27336080 (-)
G788258 NA non-coding downstream 142540 27079276 ~ 27079526 (-)
G788251 NA non-coding downstream 150443 27071422 ~ 27071623 (-)
G788247 NA non-coding downstream 153315 27068440 ~ 27068751 (-)
G788233 NA non-coding downstream 157594 27064232 ~ 27064472 (-)
G788187 NA non-coding downstream 246904 26974866 ~ 26975162 (-)
G788366 NA non-coding upstream 40821 27275580 ~ 27275890 (-)
LOC110531854 LOC106577527 non-coding upstream 141553 27376312 ~ 27381485 (-)
G788389 NA non-coding upstream 151611 27386370 ~ 27386821 (-)
G788407 NA non-coding upstream 163650 27398409 ~ 27398891 (-)
G788405 NA non-coding upstream 164548 27399307 ~ 27400210 (-)
G788173 NA other downstream 285302 26936484 ~ 26936764 (-)
G788172 NA other downstream 286560 26935127 ~ 26935506 (-)
G788171 NA other downstream 288665 26933041 ~ 26933401 (-)
G788162 NA other downstream 299664 26921912 ~ 26922402 (-)
G788408 LOC106577523 other upstream 228533 27463292 ~ 27468322 (-)
G788495 NA other upstream 328403 27563162 ~ 27563525 (-)
LOC100136672 sstr1b other upstream 588022 27821574 ~ 27834414 (-)
G789228 LOC106577504 other upstream 910461 28145220 ~ 28146979 (-)

Expression


Co-expression Network