Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110531847 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 27256603 ~ 27267492 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: alpha-protein kinase 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002474765.2 | True | 757 | mRNA | 0.46 | 2 | 27256603 | 27267492 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| epdl1 | LOC106577537 | coding | upstream | 36216 | 27214119 ~ 27220387 (+) |
| alpk1 | alpk1 | coding | upstream | 43416 | 27196521 ~ 27213187 (+) |
| LOC110531839 | LOC106577540 | coding | upstream | 1424316 | 25792766 ~ 25832287 (+) |
| LOC110531838 | drap1 | coding | upstream | 1465408 | 25786096 ~ 25791195 (+) |
| LOC110531834 | LOC106577543 | coding | upstream | 1498548 | 25749902 ~ 25758055 (+) |
| LOC110531852 | rtn3 | coding | downstream | 73206 | 27340698 ~ 27375922 (+) |
| LOC110531855 | LOC106577526 | coding | downstream | 121399 | 27388891 ~ 27399023 (+) |
| LOC110531857 | LOC106577522 | coding | downstream | 139809 | 27407301 ~ 27438764 (+) |
| LOC110531858 | LOC106577523 | coding | downstream | 171550 | 27439042 ~ 27471435 (+) |
| taf6l | taf6l | coding | downstream | 212546 | 27480038 ~ 27487523 (+) |
| G786952 | NA | non-coding | upstream | 10758 | 27245570 ~ 27245845 (+) |
| G786877 | NA | non-coding | upstream | 185659 | 27070729 ~ 27070944 (+) |
| G786799 | NA | non-coding | upstream | 305613 | 26950789 ~ 26950990 (+) |
| G786798 | NA | non-coding | upstream | 306125 | 26950265 ~ 26950478 (+) |
| G786797 | NA | non-coding | upstream | 322394 | 26933967 ~ 26934209 (+) |
| G786965 | NA | non-coding | downstream | 10286 | 27277778 ~ 27277986 (+) |
| G786966 | NA | non-coding | downstream | 11195 | 27278687 ~ 27283799 (+) |
| G786968 | LOC106577532 | non-coding | downstream | 24398 | 27291890 ~ 27292246 (+) |
| G786980 | NA | non-coding | downstream | 38405 | 27305897 ~ 27306937 (+) |
| G786999 | NA | non-coding | downstream | 68772 | 27336264 ~ 27336524 (+) |
| G786496 | LOC106577539 | other | upstream | 843071 | 26413112 ~ 26413532 (+) |
| G786218 | NA | other | upstream | 1297736 | 25874527 ~ 25958867 (+) |
| G785962 | LOC105020693 | other | upstream | 1513694 | 25712997 ~ 25742909 (+) |
| G786091 | NA | other | upstream | 1709636 | 25545231 ~ 25546967 (+) |
| LOC110531825 | LOC106577732 | other | upstream | 1724326 | 25525371 ~ 25532692 (+) |
| G787022 | LOC106577527 | other | downstream | 111840 | 27379332 ~ 27379664 (+) |
| rbpjb | LOC106577485 | other | downstream | 2072489 | 29248127 ~ 29342203 (+) |
| LOC110531891 | NA | other | downstream | 3015183 | 30282637 ~ 30288163 (+) |
| G793757 | LOC107579696 | other | downstream | 4328504 | 31595996 ~ 31596918 (+) |
