XLOC_026643 (nmt1a)


Basic Information

Item Value
gene id XLOC_026643
gene name nmt1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39238096 ~ 39259919 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051900
ATCCTCACTTCCTGGTTAAACATGGCGGATGAGAATGAGACAGCACCGCTGCCAGAGAAAGAAGAGGAGGTAGAAGAGGATCATGGACACTGCAGCAATTGTGAAAATGAAGAGCATCACTCCGATGACGGGGAGAAGGGCGACACAGGTgccaagaagaagaaaaagaaacagaagaaaaAGAACAAGGACAAGTCTGGAGCAAAAGATGCCGCTCAGGATCCTCTGGCCAAAGTAAACTCTCTCCCAGCTGATAAGTTACAGGAGATCCAGAAGGCCATTGAGCTGTTCTCGGTGGGACAGGGTCCAGCTAAAACCATGGAGGAGGCCACACGTCGCAGTTATCAGTTCTGGGACACTCAGCCTGTTCCCAAACTTGgtGAGACTGTGACATCACATGGTTGTATTGAGCCAGATAAAGATAACATTCGAGAGGAGCCCTACAGCCTCCCGCAAGGCTTTACCTGGGACACTCTCGACCTAGGAAACGCTGCAGTGcTGAAAGAGCTATACACACTCCTGAACGAGAACTACGTGGAGGATGACGACAACATGTTTCGCTTTGATTACTCTCCTGAATTTCTGCTCTGGGCTCTGCGTCCTCCAGGCTGGTTGCCTCAGTGGCATTGTGGAGTGAGAGTGAACTCTAATCAGAAGCTAGTTGGATTCATCAGTGCCATTCCAGCCAACATCCGCATCTATGACATAGAAAAGAAGATGGTGGAGATTAACTTTCTGTGTGTGCATAAGAAACTCCGTGCGAAACGAGTGGCTCCGGTGCTCATCAGGGAGATCACCAGACGGGTCAACTTGGAGGGCATCTTTCAGGCTGTGTACACTGCTGGGGTGGTACTGCCCAAACCAGTGGGCACCTGTAGATACTGGCACCGTTCTTTGAACCCACGAAAGCTGATTGAGGTGAAGTTTTCTCACCTTAGTCGCAACATGACTATGCAACGCACCATGAAGCTCTACCGGCTGCCAGAGGCTCCCAAGACTGCAGGTTCAACACTGGCTGCTCCCTCAGGAGAACATCATTGACACCTATGTAGTGGAGACTACAGATGGGAAGGTGACTGATATCCTGAGTTTCTACACTCTGCCGTCCACCATCATGAACCATCCTGTGCACCGCAGTCTGAAGGCGGCATATTCCTTCTATAATGTACACACCACCACCCCACTGGTGGACCTGATGGGAGACGCTCTTATCCTCGCCAAGTCGAAAGGTTTTGATGTCTTTAATGCACTGGACTTAATGGAGAACAAGACATTTTTGGAGAAGCTCAAGTTCGGCATTGGAGATGGAAACCTGCAGTATTACCTCTACAATTGGAAATGTCCCAGCATGGGTTCAGAAAAGgtGGGATTGGTTCTGCAGTGATCCGTTCCACCGTCCACAAGCTCCGTCTCGTATGACAGCGAGGCTGATCTATGACATCACGCACTGACCGCCTGACAGATGCTACCGATGGACTTCCTGCTTCAGGAAGGAGAATAGAAATCACCGCCCATTTTTTAAGTTTGAACTCTGACCTGTTTGGACCTGCACTACTGCTGCCAGAAAGAGAAGATGTGCTCTTctccttctcttttttttccccctctctctccctcattcttttactttctctctcttctctctctgcGCATGGACCTTAAGCCATTGTATTTACCATCACCAGAGATGAGGAACCTTAATCGGTTATGATTGTTAACAACAAAcgatgcacacaaacaaacacatgctcaTATGTAACAATGAACGTGATTTTTTCCCCCCTCTCTATCCAATGGGAGGTGCTTTTTGCAAAAACATTTCCTCAGTGTTTTcgaaaaaacaacatgcaacaatcAAAGACACGTAAAACAGCCAATGAGATAATAAAAATCCCAAGTGGACATGACAAGGGCTGCTGTCACTGATTTTCCTGTGCGCATTTTCTCCTTAAACTGTTTGTTGCCATCAAAGAAAAGCGTCTCTCTTTTGAAAACGTTGACCAACTGATGGTGCGGTACTTGGCGAATGAGATTTTTTGGTTCTGCTTTGCTTTTAATCTGTCCTCTCTAATCAGTTTATTGCTTATTTGTCTCTCTAACTGCCTGTGATCCCCATTCATGCATTTGCCAACAGAGAAGCTTTGGTGTACATGAGGATGAAGTGAGAAATATTCACAGTGTTTTGGAAGCCACTGGCAGATTGAGGGGGATCACCATAAATTAGCAATAaggatggtgtttttttttttttttttttgaggaagcAGATTTCATTGGGGTGGGAAGGGGGATTGAAATGTGGGGATTTGTGTCGTGGATGATCGATTTCGCCTGCTAATAAAGTTGTACGCCTCTGAAGGATCTATAGAACATACTGATCATGTTGAAAACATATGCTCTAACCTTTTATTTATCAAAGGAATTGAAAGCGGATGGATTTATCAAAGCAGTACAATTTTAAGAGATATCGGCAGTGCCTATTGAATATTGAAAGTTGTGGTTTTCTTGAACGTAGTGTGGGTAATTTGAAGAAAGACAGGTTGTGGAAAATACAATGAACGCAACTGAAAACGGGTCTTTAGGATTTTATGATGGAGTGAAAGATGTCAAcgtgtattaatttttttttcttttgtgctaAATAAAAAGTAGCAGCTGCTGTGAACATC
>TCONS_00051901
TCCTTATTTGTGCTAACAGCTAACTTACACCCATCCGCATTTATGTTAGGGTAAAATGTACACAACTGGTTCTTGCTCCTGGCGTTCATTCctctttggtgacccctgataaaagaGGGTGAAAAGCCGAAATCGAGTGACTGAGTTGGGTTACTTGGGGCTCATTGCTATAAACTACGCATACCGTCGGGCTTTGCGGCAGTCCACCAATGGTTTTGCGGGGTGTGAGAGCGCAGGGCGAGATCCTCACTTCCTGGTTAAACATGGCGGATGAGAATGAGACAGCACCGCTGCCAGAGAAAGAAGAGGAGGTAGAAGAGGATCATGGACACTGCAGCAATTGTGAAAATGAAGAGCATCACTCCGATGACGGGGAGAAGGGCGACACAGGTgccaagaagaagaaaaagaaacagaagaaaaAGAACAAGGACAAGTCTGGAGCAAAAGATGCCGCTCAGGATCCTCTGGCCAAAGTAAACTCTCTCCCAGCTGATAAGTTACAGGAGATCCAGAAGGCCATTGAGCTGTTCTCGGTGGGACAGGGTCCAGCTAAAACCATGGAGGAGGCCACACGTCGCAGTTATCAGTTCTGGGACACTCAGCCTGTTCCCAAACTTGgtGAGACTGTGACATCACATGGTTGTATTGAGCCAGATAAAGATAACATTCGAGAGGAGCCCTACAGCCTCCCGCAAGGCTTTACCTGGGACACTCTCGACCTAGGAAACGCTGCAGTGcTGAAAGAGCTATACACACTCCTGAACGAGAACTACGTGGAGGATGACGACAACATGTTTCGCTTTGATTACTCTCCTGAATTTCTGCTCTGGGCTCTGCGTCCTCCAGGCTGGTTGCCTCAGTGGCATTGTGGAGTGAGAGTGAACTCTAATCAGAAGCTAGTTGGATTCATCAGTGCCATTCCAGCCAACATCCGCATCTATGACATAGAAAAGAAGATGGTGGAGATTAACTTTCTGTGTGTGCATAAGAAACTCCGTGCGAAACGAGTGGCTCCGGTGCTCATCAGGGAGATCACCAGACGGGTCAACTTGGAGGGCATCTTTCAGGCTGTGTACACTGCTGGGGTGGTACTGCCCAAACCAGTGGGCACCTGTAGATACTGGCACCGTTCTTTGAACCCACGAAAGCTGATTGAGGTGAAGTTTTCTCACCTTAGTCGCAACATGACTATGCAACGCACCATGAAGCTCTACCGGCTGCCAGAGGCTCCCAAGACTGCAGGTTTGAGGCCGATGACCATAAAAGACATCCCACTGGTTCACCGCCTGCTGAAGGAATACCTAAATCAGTTCAACCTGGTTCCAGTCATGAGCCCTGAGGAGGTTCAACACTGGCTGCTCCCTCAGGAGAACATCATTGACACCTATGTAGTGGAGACTACAGATGGGAAGGTGACTGATATCCTGAGTTTCTACACTCTGCCGTCCACCATCATGAACCATCCTGTGCACCGCAGTCTGAAGGCGGCATATTCCTTCTATAATGTACACACCACCACCCCACTGGTGGACCTGATGGGAGACGCTCTTATCCTCGCCAAGTCGAAAGGTTTTGATGTCTTTAATGCACTGGACTTAATGGAGAACAAGACATTTTTGGAGAAGCTCAAGTTCGGCATTGGAGATGGAAACCTGCAGTATTACCTCTACAATTGGAAATGTCCCAGCATGGGTTCAGAAAAGgtGGGATTGGTTCTGCAGTGATCCGTTCCACCGTCCACAAGCTCCGTCTCGTATGACAGCGAGGCTGATCTATGACATCACGCACTGACCGCCTGACAGATGCTACCGATGGACTTCCTGCTTCAGGAAGGAGAATAGAAATCACCGCCCATTTTTTAAGTTTGAACTCTGACCTGTTTGGACCTGCACTACTGCTGCCAGAAAGAGAAGATGTGCTCTTctccttctcttttttttccccctctctctccctcattcttttactttctctctcttctctctctgcGCATGGACCTTAAGCCATTGTATTTACCATCACCAGAGATGAGGAACCTTAATCGGTTATGATTGTTAACAACAAAcgatgcacacaaacaaacacatgctcaTATGTAACAATGAACGTGATTTTTTCCCCCCTCTCTATCCAATGGGAGGTGCTTTTTGCAAAAACATTTCCTCAGTGTTTTcgaaaaaacaacatgcaacaatcAAAGACACGTAAAACAGCCAATGAGATAATAAAAATCCCAAGTGGACAT

Function

symbol description
nmt1a Predicted to enable glycylpeptide N-tetradecanoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to act upstream of or within N-terminal protein myristoylation. Predicted to be active in cytoplasm. Orthologous to human NMT1 (N-myristoyltransferase 1).

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0018008 N-terminal peptidyl-glycine N-myristoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-477 Predicted to enable glycylpeptide N-tetradecanoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to act upstream of or within N-terminal protein myristoylation. Predicted to be active in cytoplasm. Orthologous to human NMT1 (N-myristoyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000052966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051900 False 2669 nonsense_mediated_decay 0.45 13 39238096 39259677
TCONS_00051901 True 2248 mRNA 0.48 12 39238860 39259919

Neighbor

gene id symbol gene type direction distance location
XLOC_026642 si:ch211-232p21.6 coding downstream 29382 39200082 ~ 39208714 (-)
XLOC_026641 RETSAT coding downstream 39983 39191815 ~ 39198113 (-)
XLOC_026640 retsat coding downstream 47779 39181387 ~ 39190317 (-)
XLOC_026639 cdk21 coding downstream 58048 39175860 ~ 39180048 (-)
XLOC_026638 svilc coding downstream 66128 39112898 ~ 39171968 (-)
XLOC_026644 plcd3a coding upstream 163 39260082 ~ 39305291 (-)
XLOC_026645 arhgap23a coding upstream 53175 39313094 ~ 39363065 (-)
XLOC_026646 CU464118.1 coding upstream 111954 39371873 ~ 39454903 (-)
XLOC_026647 zgc:100868 coding upstream 212423 39472342 ~ 39488639 (-)
XLOC_026648 NA coding upstream 301865 39561784 ~ 39563301 (-)
XLOC_026637 NA non-coding downstream 124549 39112314 ~ 39113547 (-)
XLOC_026636 NA non-coding downstream 262398 38971435 ~ 38975698 (-)
XLOC_026631 BX936420.1 non-coding downstream 708680 38525979 ~ 38529416 (-)
XLOC_026626 NA non-coding downstream 1588707 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1653289 37581522 ~ 37584807 (-)
XLOC_026651 BX322795.1 non-coding upstream 389526 39649445 ~ 39649562 (-)
XLOC_026653 BX649356.2 non-coding upstream 685946 39945865 ~ 39951527 (-)
XLOC_026654 BX649356.3 non-coding upstream 697439 39957358 ~ 39957474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04545960_04557955 NMT1A, NMT1 coding CI01000046 null 4545960 ~ 4558453 (+)