LOC110531854 (LOC106577527)


Basic Information

Item Value
gene id LOC110531854
gene name LOC106577527
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27376312 ~ 27381485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615316.2
GGAGCCCCAGGGGCCCCAAGCTCGGCTCCCTACCCCGAAGACAAGCAGAGCCTTAAAATACATACAGGAGGCCGCTATAGCTTACCATACACAAGAGATACTCACACCCGCAGACTCGAAGAAGGATATGACCGACCAAATGTCGAGCTGATATGTGAAAAGTTAACTTGGCTCCAGAGCTGAGCGCGTGGGGGACGAGGGGCACATTATAAAGACAGTACGGGGGCACCCTAAAATCGATGGGTCCGAACGTGTTATAGATAGCTTACAAAACGCGTGCCGAATGATTCTCCAAAAATACCGTGCCTCCCTGGTTTATCAAGGCGAATTGAAGGCAATCGTAAATAGTGTAACGTTGCAGAGTAATGGAAGAGAAAGAGACGGGGGAGAGCGAGCCCGTGGTCCACCCGTGTGCTGAGCAGACAGATTCTCTCTCATTAATAATAAGCGGAGAGGAGGAAGCAACACGAGAGCCCAGTGACTTGGGACACTGTTCAAGAGAGGAAGACGGTCTGACCAATGGCCACGTGGACAATGACGGCGATGAGGAGATGGTTACCCCACTCTGCTCCCCGGGCACCAGCTACTGGAGTGTCACAGAGGGTCCCGACTCCCCCTTTCTCCTGTCCCCCGTCCCGGGCCCCTCGGGGATCAAGGAGAGGGTCCAACGCGCCTCCCGTCCCGGCTTCAGCCGCATCCCGGGCCGGGACCACCGGCGCTACTACCACGAGTACTGGCGCAGCGAGTTCCTGATGGACTTTGACCCCCGTCGCCACGGCATGATCTGCATGGTGTGTGGGAGCTCGCTGGCCACTCTCAAACTCAGCACCATCAAGAGGCATATTCGACAGAAGCACCCAGATTCCCTGCTGTGGAGTGTGTCCGACAAGGAGGTGATTCGCTCGGGCTGGGAGAGCCACCTGAGTCTGGAGGGGGGCCAGAGGTTGTACTGTCCGGCCGGAGGGGTGGTCGCCGTCTCGCAGGGTCAGGAGGAGCAGCTGCTGGACTGCGCACGCCGCTCCACCGGGAAACCCGATGGTATGGTGACCCCCAAACTCCAGCCCCGGTCCACCACCCCATCTCCCCATACACCGGCCCCCCTCCAGCAGCAGGAGGAGCTCCCCGGGCCCTCGGCCCGGACCCTGGAGCGCTACCTGAACGACTCGCTCCACGCCTGGTTCCGACAGGAGTTCCTCATGGAGTACCAGGCGGAGGCGGGCAGGCTGGTGTGCATGGTGTGCGGCCGCCCGCTGCCCTCGCTCCACCTGGACCACATCAAGAGCCACGTGCTGGACATCCACCCTCAGTCGCTGGTCTACAGTTCGGAGGAGAAGCACGGCATCCTGCAGACCTGGGCTCAGACGCATgAATCTGACCCCCTGAACGACTTCATCAAGTCGGAGCCCAACACCAAAGACGAGAGAGAGGCTGGGGTGGACTTCTTCCATGATGACCTGGAGACCATCCAGATTGGCGCGGACAGCGATGAGGCATTGTCCCAGATACACGACATGGTTGGTAGCAGGGAAGGAGGTGGTGTTGGAGCTCCAGAGGTGACCAGCCCCATACCCCCTCTCCCTTTCCGCCAGCCCAGGAAGAGGCGTCTCCTCGGGGGCTTCCCCTGGCGCCTGCGCCTGGACTACCTGGTGGCCTATGGGCCTCAGGGTCGTGGCACCTTCTGCATGGTGTGCTCCCAGGCCCTGCCCGTGGCCAAGGTGAGCAGCTTCCGGCGCCACATTCAGGAGTGCCACCCTGAGACCACCGACCTGGcccgggaggagagagaggccatGGCCGAGGCCTGGACCAAAGAGGCCCCCACGGAAGACCACCTGGCCGTGCAGATGAAAGAAGAAGTGGACCCCGGTGACATCATCAGCGTCCATGTGTCAGGAGAGATGGGTGAAAAGGCAGCAccggacaacaacaacaaccaccggACCCCCAAGATGTCCGCCATTCAGACAGTGAAGAAGGAGGAGGGGGTCGTCACCATACCTGCCACTCTGGGACGCCATGGACACTACCCGGGTAAGGACCAGCGGCGGAACTACCAGGTGCGCTGGCGGATGGAATTCCTGATGGACTATGACTGCCGGCGACATGGGCTGATCTGTATGGTGTGCGGGGCGACGTTAGCCACTCTTAAAGTCAGCACCATCAAGAGACACATCCAGCAGGTCCACCCTCATTCTCTGGAGTACAGCTCTGACGAGAGACAGCAAGCCCTGCTCAGCTACAACCAGACAGCCCTGCACTTCGTCCACTCGGACGACTGTTTTTCCTCCCTGGACCACGGACACTCGGCAGTCGGAGAGACGGCCGCCAGCCTCTTCGTCAGTTAAGACGAGGGGCGACAGGCCCACGGTTGTTCTCCGTTCTCCTCGCTTCAACCCCAAGTCTTTCTTTCTCAGGAAGTTAGAAACATGAGGCTTGGTAGAGCCCTGTCGCGAGTGGTGTCTGACACAGTCGGTGATTGATGGTGTGAGGGAGCGTACAATATAGCACTTTTTGTCCCAAAAATGTACTTAAACCTAGCTTTGGGTGTGTAGGTGATTGAATGAGAGGGTGTTTGAGGTTTATTGCTTAAGACAATGAACGGCACTTAAAGATGCGATTATCTTTATTCACTTACGTCAAATACATCAAGTTATTTCAGAAATTCATTGTTTACAATGAGGTAAATGGACTTcctccatacattttttttttcttacctTGCATGTCTTTTCCAGTGTCATAGTACTATTGTTGCACCGGCCAGGAACTATTTTTGCTTCTCATGAGTCTTCTTAGCAAaaagtttcacacacacacaaaaaaaatctattttataagTGTTGAAtatttgctttttattttttattttttaacaagcACTTTTAGACATGTTTTTTTGCGGCCATTTTGTCTACTTCATTGATCAAAGTTAACGATGCCACGTAAATTTCCTTTTGCATGGCAATTCTGAAGTCATGCATGATTGTGGAGGGATTGCCTGGAATGGCTTGGGCGTTTTATAAGAGAGCATATTTATACAAGATTTCAAATGCAAGATTTCCATTTCAGTAACTCACCTATTACAAGGTTTATGCAACAAAGTGATAAAAGAAAAAGTATAATATTACAACAGCGTCAGGAAATAAATTGCCAAGTTGACCACCTATGAAATGAGCACCTCGGTTGCCCTTATTTCAGTGATCTTTAAAATATCACTCCCACCAGGAAAAGCACAACTCAGGGATTGTCCATTTTCCATCTGTGCTCGCTCTTTCGCTCGCTTGTTATAGCGCATGAAAATGACTACACTCTTAACATAACAATAATTTACAACCCATGGACTAATTGATTTGCTCAAAGAACCAGATGGCAGCATTTCTCCAGTTACGTGGAGAGGAGGGACGTGAGTGTTGAATTaccactctctttctctaaccTAACCTAAACTTAATTGGTGGGCTGGATCTCAAATTGTTACCAGTCAAACCTGTGCTTTCTCCGTCCTTGTTTCATGAATTCCTCTCAAAGGCATTGCAGGGCCAGAGGAGGGACCCTGAATCCTCTCCTCTAATGCACTTCAATAGGAATTGAGGAAACAAGGAGAGAGGAAGCAAGGATTTGACAGCCAGTAATGTTTTCAGACACATCCCTAGTTTGTGCAGTGGTCTTTTTAGCATGCAGGGAATGGGCAAGGAGTGATGAAATACTTATTACATCTGGGCTTTGAGCCACGTTGGCCACAGAAAGGTTAAAAGCTTTGTGACTCAGCACTTATTATTTAAATATGAATAGAATATAAATATGTGATTGAATAAATAAGAATAAACCTTGTTTGTTGCAATGA
>TU897736
GCGGCCATTTTGTCTACTTCATTGATCAAAGTTAACGATGCCACGTAAATTTCCTTTTGCATGGCAATTCTGAAGTCATGCATGATTGTGGAGGGATTGCCTGGAATGGCTTGGGCGTTTTATAAGAGAGCATATTTATACAAGATTTCAAATGCAAGATTTCCATTTCAGTAACTCACCTATTACAAGGTTTATGCAACAAAGTGATAAAAGAAAAAGTATAATATTACAACAGCGTCAGGAAATAAATTGCCAAGTTGACCACCTATGAAATGAGCACCTCGGTTGCCCTTATTTCAGTGATCTTTAAAATATCACTCCCACCAGGAAAAGCACAACTCAGGGATTGTCCATTTTCCATCTGTGCTCGCTCTTTCGCTCGCTTGTTATAGCGCATGAAAATGACTACACTCTTAACATAACAATAATTTACAACCCATGGACTAATTGATTTGCTCAAAGAACCAGATGGCAGCATTTCTCCAGTTACGTGGAGAGGAGGGACGTGAGTGTTGAATTaccactctctttctctaaccTAACCTAAACTTAATTGGTGGGCTGGATCTCAAATTGTTACCAGTCAAACCTGTGCTTTCTCCGTCCTTGTTTCATGAATTCCTCTCAAAGGCATTGCAGGGCCAGAGGAGGGACCCTGAATCCTCTCCTCTAATGCACTTCAATAGGAATTGAGGAAACAAGGAGAGAGGAAGCAAGGATTTGACAGCCAGTAATGTTTTCAGACACATCCCTAGTTTGTGCAGTGGTCTTTTTAGCATGCAGGGAATGGGCAAGGAGTGATGAAATACTTATTACATCTGGGCTTTGAGCCACGTTGGCCACAGAAAGGTTAAAAGCTTTGTGACTCAGCACTTATTATTTAAATATGAATAGAATATAAATATGTGATTGAATAAATAAGAATAAACCTTGTTTGTTGCAATGATTTACGTGTATGTTTGTGTCGGTGTGCATAAGGGGCACGTTAAAATGACCCTTTGGTGGTACTTAGTTGGCTTGGGCGAGGACACGAGCAATGATCTTCGGTTTTATTTTGGGACCGAGTCCCTCATCTTTCTTCAATTTCATCTGTTTCAAGTATCCGCTCTGCATTTCGTCTGTACATGGCGAAAGGTTGTTGAGACATGCATTCTGTC
>TU897739
GAGGGGCACATTATAAAGACAGTACGGGGGCACCCTAAAATCGATGGGTCCGAACGTGTTATAGATAGCTTACAAAACGCGTGCCGAATGATTCTCCAAAAATACCGTGCCTCCCTGGTTTATCAAGGCGAATTGAAGGCAATCGTAAATAGTGTAACGTTGCAGAGTAATGGAAGAGAAAGAGACGGGGGAGAGCGAGCCCGTGGTCCACCCGTGTGCTGAGCAGACAGATTCTCTCTCATTAATAATAAGCGGAGAGGAGGAAGCAACACGAGAGCCCAGTGACTTGGGACACTGTTCAAGAGAGGAAGACGGTCTGACCAATGGCCACGTGGACAATGACGGCGATGAGGAGATGGTTACCCCACTCTGCTCCCCGGGCACCAGCTACTGGAGTGTCACAGAGGGTCCCGACTCCCCCTTTCTCCTGTCCCCCGTCCCGGGCCCCTCGGGGATCAAGGAGAGGGTCCAACGCGCCTCCCGTCCCGGCTTCAGCCGCATCCCGGGCCGGGACCACCGGCGCTACTACCACGAGTACTGGCGCAGCGAGTTCCTGATGGACTTTGACCCCCGTCGCCACGGCATGATCTGCATGGTGTGTGGGAGCTCGCTGGCCACTCTCAAACTCAGCACCATCAAGAGGC

Function

NR:

description
uncharacterized protein C11orf95-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615316.2 False 3844 mRNA 0.52 5 27376523 27381485
TU897736 False 1157 lncRNA 0.41 1 27376312 27377468
TU897739 True 644 TUCP 0.57 2 27380162 27381289

Neighbor

gene id symbol gene type direction distance location
LOC110531851 LOC106577528 coding downstream 40443 27327518 ~ 27336080 (-)
LOC110531850 LOC106577529 coding downstream 49117 27305847 ~ 27327406 (-)
LOC110531849 LOC106577530 coding downstream 71123 27296476 ~ 27305400 (-)
LOC110532979 LOC106577532 coding downstream 84230 27278684 ~ 27292293 (-)
LOC110531846 LOC106577533 coding downstream 105207 27247394 ~ 27271316 (-)
ecsit ecsit coding upstream 20351 27401836 ~ 27406685 (-)
trnaa-ugc-33 NA coding upstream 102883 27484368 ~ 27484441 (-)
LOC110531864 LOC106577516 coding upstream 219560 27601045 ~ 27623830 (-)
LOC100136672 sstr1b coding upstream 440089 27821574 ~ 27834414 (-)
chi chi coding upstream 485863 27867348 ~ 27872371 (-)
G788366 NA non-coding downstream 100633 27275580 ~ 27275890 (-)
G788292 NA non-coding downstream 152151 27157697 ~ 27224372 (-)
G788258 NA non-coding downstream 296997 27079276 ~ 27079526 (-)
G788251 NA non-coding downstream 304900 27071422 ~ 27071623 (-)
G788247 NA non-coding downstream 307772 27068440 ~ 27068751 (-)
G788389 NA non-coding upstream 4885 27386370 ~ 27386821 (-)
G788407 NA non-coding upstream 16924 27398409 ~ 27398891 (-)
G788405 NA non-coding upstream 17822 27399307 ~ 27400210 (-)
G788397 NA non-coding upstream 178052 27559537 ~ 27561517 (-)
G788500 NA non-coding upstream 187989 27569474 ~ 27569785 (-)
G788173 NA other downstream 439759 26936484 ~ 26936764 (-)
G788172 NA other downstream 441017 26935127 ~ 26935506 (-)
G788171 NA other downstream 443122 26933041 ~ 26933401 (-)
G788162 NA other downstream 454121 26921912 ~ 26922402 (-)
LOC110531840 LOC106577539 other downstream 918494 25865990 ~ 26900452 (-)
G788408 LOC106577523 other upstream 81807 27463292 ~ 27468322 (-)
G788495 NA other upstream 181677 27563162 ~ 27563525 (-)
G789228 LOC106577504 other upstream 763735 28145220 ~ 28146979 (-)
G789863 LOC100194703 other upstream 1147335 28528820 ~ 28652471 (-)
LOC110531854 LOC106577527 other upstream 2694 27376312 ~ 27381485 (-)

Expression


Co-expression Network