LOC110531858 (LOC106577523)


Basic Information

Item Value
gene id LOC110531858
gene name LOC106577523
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27439042 ~ 27471435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615325.2
GCTGACACAATAATGTTGGTGTTGGTGATGGTTGGAGCAACTCTGTCTTGCtgagaattgtgtgtgtgtgtgtgtgtaataagtaGCCGGAGTTTTCCGATTCGAAGTTACATTTTCCGGAGATGACGTTTACAAACGAgggggagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactgagcggaggtgaagaagaggaggatgaagctGGGAGCTGAGGATGGGAGGAAGAGTGGAGTAAGAGACAGGCTAGCTATCAAGGGCTGtgtatgcctgcctgcctgcaagTGTGAATGCGtgagtgagtgtggaagagggagGTCGTTATCGGACTGAAACAAAAGACGCATTTTGGAACCCCGAAACATTGCAACGGAAACTTTAAACTTTTACCCGCCAGAGCTTGGCTACTGTGCCGGGTCCCGGCTTTGTTTCGCGGCGGGTGAGGTCTCTAATAAATGCAAGGATAAAATAGCTCCAGATCGACATTTTTAACGCAGGAGGGGAATCCCTTTGGACAGTGTTTTGTTGGGGGTAACGAGAGAATGGCGGCCAACATGTACCGAGTGGGAGATTACGTGTACTTTGAGAATTCCTCCAGCAACCCTTACCTAATCCGCAGAATAGAAGAGCTCAACAAGatcatgGTTAATCCAATGACGGCCAATGGGAACGTGGAAGCCAAGGTGGTGTGTCTGTTCCGGAGGCGGGACATCTCGGGCAACCTCAACACTCTGGCCGACAGCAACGCGAGAGACTTTGAGGAGGAGTCCAAGCAGCCCACTGTGTCTGAACAGCAGAAACACCAGCTGAAGCACCGAGAGCTTTTCCTCTCTCGGCAGTTTGAGTCTCTACCTGCAACTCACATACGagGGAAATGTAACGTCACCCTCCTCAACGAAACGGACGTCCTCGCCGGGTACCTGGAGAAAGAGGAGTGTTTCTTTTACTCGCTGGTGTTTGACCCGGTTCAGAAGACCCTCCTGGCGGACCAGGGAGAGATCCGCGTAGGCTCCAAGTACCAGGCCGAGATCCCTGACAAGCTTGCCGAAGGTGAAACACACACCCGTATCCAGGAAAAGCTGGAGACCAAGGTCTGGGACCCTGACAACCAGCTCAAAGACCCCCAGATTGACCAGTTCCTGGTGGTGGCTCGtgctGTGGGGACGTTTGCCAGAGCCCTGGACTGCAGTAGCTCCATCCGTCAACCCAGCCTGCATATGAGTGCTGCAGCAGCCTCCAGAGACATCAcactgTTCCATGCCATGGACACCCTGCAGAAGAACGGTTACGACCTAGCCAAGGCCATGTCCACGTTGGTCCCGCAGGGCGGGCCGGTCCTCTGCCGTGACGAGATGGAGGAGTGGAGTGCCTCGGAGGCCATGCTGTTTGAAGAGGCCCTGGAGAAGTACGGCAAGGACTTTAACGACATCCGCCAGGACTTTTTACCATGGAAGTCACTAGCCAGTGTGGTCCAGTTCTACTACATGTGGAAGACTACTGACCGCTACATCCAACAGAAACGACTAAAGGCAGCAGAAGCAGACAGCAAGCTGAAACAGGTGTACATCCCCACCTACACCAAACCCAACCCCAACCAGATCATGGCTCCTGGTAACAAGCCTGGCATGAACGGGGCCGCTGGCTTCCAGAAAGGACTGAGCTGCGAGAGCTGCCACACTGCCCAGTCAGCACAGTGGTACGCATGGGGTCCTCCCAACATGCAGTGCAGACTGTGTGCCTCCTGCTGGATCTACTGGAAGAAGTATGGAGGCCTGAAGACCCCCACACAGCTAGAGGGCGCCGCAAGATCTGTCTCGGAGTCCACTCCGCGCGGTCACATGACCCGCCAGGAGGTGCAAGGCCTGTCCCCGTTCACGACAAGCGGGGGGCGCGCCAAGCTGCTGGCCAAGAACCGGCAGACATTCATCCTGCAGACCACCAAGCTGACGCGTATTGCCCGCCGTGTCTGCACTGACATCCTGCAGCCCCGCCGCGCGGCACGCCGCCCCTACGCCTCCATCAATGCAAACGCCGTCAAGGCCGAGTGTATGATAAGGTTGCCTAAAGCAACCAAGGCCCCTATAAAGAACCGCTCTATCCCTCGACCACCGCTGGCCACTATAGTGAAGGAACTGGCCATCCAGGCTCCACTCAAGCTGAAGGCCCCCAGAGGCGCTCCCACACCCATCAACCGCAACCAGGCCAACCAGCCCCGCGGGGGATCAGGCCTGCTCGGGAAGAGGCCCTTTGACAGTAGCTCACAGGCGGCAGGGCTGCCGTTCCCCACCAATGGGAGGCCGTTCGCATCGGGCATGAGGACCACTTCACAGTCGGTGATCAAGCGTCAGAAAGTGAACCAGGGAGACGCACCCAACCCCGTGGTGTTTGTGGCCACGAAAGACACCAGGGCTCTGAGAAAACACCTGACTCAGTCTGAGATGCGACGTGCAGCCAGAAAACCTCACCTCCCGGTCAGGGTCAAGCTGCCCCTAGGTCCCCGGACCCTGGTTCTGCCCACCCTGCCATCCAGCACCAGCGAGCCCATCGTCCTGGAGGACTAAGGGGGGGGGGTCACCACCCTGCACGTCCACCTGCTAGTGCAGCAGCGCACGCCATACCAGTCCAGTAGTCGTTTTCTGTTGTCATATTTTTTTGTTCTGTTACCTCCCAAAAGCTGACGTGCtgcttaccacacacacacacactttactgaCACCCACATTGagctcacacatacacatgccAACATTACTTCTCTACACACACTTACACCCACATACACGCGCTGGGCTTTGGGCTTTGTAGTATTTTATTCCGGCTCTTTTTGCTTAATTATTTTGCTCCCCTTTTTTAATGGCAAATATTTTTAACTGTGTAATTTAAACTCTGAAATATTTCTCATCCTGAAATAATGGTGTTAAAACACTTTATTTTTTCCTCCGGGTCTTATTTGTGTAAATATTTGCAGCTTTTTGAGAGGGTGACACCAATTTGGTTGGGGATGTGGGAAGGCCATAGAAAGAAATAGAAATACTAGAAGGGACAAAGTCTCTCAAACCACTGCAATTTGACTGAATGTCCATTCTAGTTATTCTATTTCTATTGGGAAGGCTAAATGGGACAGGAGTTTATAGCATGTTTCTTTTGATTATTTTTCCGGGAAAGTCTAGTTAGATGTTAATGAAACCATGTTCCTTCATAGGTCTGGGAGGTTGAGGTGAAGTACTTTGTATGACTCATCATTCAAGCATACTTGTCAAATAATCATATTCTACTTTTGGACACTCATTCTGTTAGACTTTAATTTGCACTGTCACCCTGccccctttccacacacccaaATAAGAACTGATCCCCCCTCTATCTCCACAAGCCTATCAGAAGTTACGTTTGATGGTTTGATAGTGAGGGAAAAAATGCTGTTGACCCCTAGTAGTTTGAGCTCTGTTTTTCTTGTTTGTCATCACAATCCATTTGAGTCTTGCCTTGTCTCCTATCACTTGATTGTCATGCTTGTTACAGCCACGTTTTACCCATCCGGAGAGCGAGACTTTCTGGATCCGTCTCTGTAAAGCCTTTGGGGTGCGTTTTGGTTTTGACCTGCGAGAACGACCTCTCGTAGAACGGTCTTGGATCATCAATACAATGGTAGGAGAGAGTAATGGTTTAGGAAAAGGTGTAAGGTGTAACAGGGTAGAATACATTAATTTCATGTAGGTTTGGAAGATATTCAAAAGTGTGTTCTGGATGTGGATCTGATGGGTTACTGTGGTTTGAGACATACGGAATAGATGCTGTTGTCTTTAAGGCCCTTATTGTGAGAAAGATGGGTTATTTTTAGTGAAGGAGACAGAATTAAGCCATAAACATTCAAGGTGTGTAAAACTCCATTCTAAGATGGCCCCTGTGCATGTTGCCACCTGTACGTATAAAACATGCATTCAGATCCCCCACCCATAGATTAAGTCACAGCATTTATGACAATGGACTGTTTCGCTCTTGCTTTTGAACAGACATGGCAAATTATGTTACGAGCTGGTCGTCAGAATGTCATTACTAAAGCAGCAATATGTATTGACTTGGGTACAGAAGTCATGTTTTTAATGATATGATGGGAGAGGAATCTCCAGTGATGTCTTTACTTGTGGATTGATATggtttgaatctgtgttttaccTTTTTGTGTTTTATGATGAAAGGGTGCGTTAGATTAAATCGATGCTTAATTGGATATTATAATTCCTCATGCTCCCTCAGGCATTGGGAACTGACAGCCAGTACTGGGGTAGAAATGAAGGATTTATATGCAAGTTTGGTCCCAATGTGGGcttttgtaatgtttctaaaacaaatTTTAAGTGTTAAAATGCTTAGTGAAAATACTAATCTGAAGAAGAAAAAACTTGACCTATTGATaatgtcagtttttttttttatatataaaaccTTTTAAAAAAAGCTTGTAATTACTTCATATTTTGGAGAAGGTTAAAATACTGTACATGTGAACATTGCTCTCTGTCATTGAGTGGTTTTGGGATGGGAGACTGGGATGGTTGGCCATCAAACAgttgggagggatggagagggggttaGAATTTTGTATGTTGGAGAGATAATTATGctacaattacattttttttctcaagTGTTTTTTATTCCAATGTGTCTGTATCCTTTTAATGTATCTTgataagaaaataaataaagattTGTTTTCTTTGTGGTCATATACACATTTCTCTTC
>XM_021615326.2
CAATAATGTTGGTGTTGGTGATGGTTGGAGCAACTCTGTCTTGCtgagaattgtgtgtgtgtgtgtgtgtaataagtaGCCGGAGTTTTCCGATTCGAAGTTACATTTTCCGGAGATGACGTTTACAAACGAgggggagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactgagcggaggtgaagaagaggaggatgaagctGGGAGCTGAGGATGGGAGGAAGAGTGGAGTAAGAGACAGGCTAGCTATCAAGGGCTGtgtatgcctgcctgcctgcaagTGTGAATGCGtgagtgagtgtggaagagggagGTCGTTATCGGACTGAAACAAAAGACGCATTTTGGAACCCCGAAACATTGCAACGGAAACTTTAAACTTTTACCCGCCAGAGCTTGGCTACTGTGCCGGGTCCCGGCTTTGTTTCGCGGCGGGTGAGGTCTCTAATAAATGCAAGGATAAAATAGCTCCAGATCGACATTTTTAACGCAGGAGGGGAATCCCTTTGGACAGTGTTTTGTTGGGGGTAACGAGAGAATGGCGGCCAACATGTACCGAGTGGGAGATTACGTGTACTTTGAGAATTCCTCCAGCAACCCTTACCTAATCCGCAGAATAGAAGAGCTCAACAAGACGGCCAATGGGAACGTGGAAGCCAAGGTGGTGTGTCTGTTCCGGAGGCGGGACATCTCGGGCAACCTCAACACTCTGGCCGACAGCAACGCGAGAGACTTTGAGGAGGAGTCCAAGCAGCCCACTGTGTCTGAACAGCAGAAACACCAGCTGAAGCACCGAGAGCTTTTCCTCTCTCGGCAGTTTGAGTCTCTACCTGCAACTCACATACGagGGAAATGTAACGTCACCCTCCTCAACGAAACGGACGTCCTCGCCGGGTACCTGGAGAAAGAGGAGTGTTTCTTTTACTCGCTGGTGTTTGACCCGGTTCAGAAGACCCTCCTGGCGGACCAGGGAGAGATCCGCGTAGGCTCCAAGTACCAGGCCGAGATCCCTGACAAGCTTGCCGAAGGTGAAACACACACCCGTATCCAGGAAAAGCTGGAGACCAAGGTCTGGGACCCTGACAACCAGCTCAAAGACCCCCAGATTGACCAGTTCCTGGTGGTGGCTCGtgctGTGGGGACGTTTGCCAGAGCCCTGGACTGCAGTAGCTCCATCCGTCAACCCAGCCTGCATATGAGTGCTGCAGCAGCCTCCAGAGACATCAcactgTTCCATGCCATGGACACCCTGCAGAAGAACGGTTACGACCTAGCCAAGGCCATGTCCACGTTGGTCCCGCAGGGCGGGCCGGTCCTCTGCCGTGACGAGATGGAGGAGTGGAGTGCCTCGGAGGCCATGCTGTTTGAAGAGGCCCTGGAGAAGTACGGCAAGGACTTTAACGACATCCGCCAGGACTTTTTACCATGGAAGTCACTAGCCAGTGTGGTCCAGTTCTACTACATGTGGAAGACTACTGACCGCTACATCCAACAGAAACGACTAAAGGCAGCAGAAGCAGACAGCAAGCTGAAACAGGTGTACATCCCCACCTACACCAAACCCAACCCCAACCAGATCATGGCTCCTGGTAACAAGCCTGGCATGAACGGGGCCGCTGGCTTCCAGAAAGGACTGAGCTGCGAGAGCTGCCACACTGCCCAGTCAGCACAGTGGTACGCATGGGGTCCTCCCAACATGCAGTGCAGACTGTGTGCCTCCTGCTGGATCTACTGGAAGAAGTATGGAGGCCTGAAGACCCCCACACAGCTAGAGGGCGCCGCAAGATCTGTCTCGGAGTCCACTCCGCGCGGTCACATGACCCGCCAGGAGGTGCAAGGCCTGTCCCCGTTCACGACAAGCGGGGGGCGCGCCAAGCTGCTGGCCAAGAACCGGCAGACATTCATCCTGCAGACCACCAAGCTGACGCGTATTGCCCGCCGTGTCTGCACTGACATCCTGCAGCCCCGCCGCGCGGCACGCCGCCCCTACGCCTCCATCAATGCAAACGCCGTCAAGGCCGAGTGTATGATAAGGTTGCCTAAAGCAACCAAGGCCCCTATAAAGAACCGCTCTATCCCTCGACCACCGCTGGCCACTATAGTGAAGGAACTGGCCATCCAGGCTCCACTCAAGCTGAAGGCCCCCAGAGGCGCTCCCACACCCATCAACCGCAACCAGGCCAACCAGCCCCGCGGGGGATCAGGCCTGCTCGGGAAGAGGCCCTTTGACAGTAGCTCACAGGCGGCAGGGCTGCCGTTCCCCACCAATGGGAGGCCGTTCGCATCGGGCATGAGGACCACTTCACAGTCGGTGATCAAGCGTCAGAAAGTGAACCAGGGAGACGCACCCAACCCCGTGGTGTTTGTGGCCACGAAAGACACCAGGGCTCTGAGAAAACACCTGACTCAGTCTGAGATGCGACGTGCAGCCAGAAAACCTCACCTCCCGGTCAGGGTCAAGCTGCCCCTAGGTCCCCGGACCCTGGTTCTGCCCACCCTGCCATCCAGCACCAGCGAGCCCATCGTCCTGGAGGACTAAGGGGGGGGGGTCACCACCCTGCACGTCCACCTGCTAGTGCAGCAGCGCACGCCATACCAGTCCAGTAGTCGTTTTCTGTTGTCATATTTTTTTGTTCTGTTACCTCCCAAAAGCTGACGTGCtgcttaccacacacacacacactttactgaCACCCACATTGagctcacacatacacatgccAACATTACTTCTCTACACACACTTACACCCACATACACGCGCTGGGCTTTGGGCTTTGTAGTATTTTATTCCGGCTCTTTTTGCTTAATTATTTTGCTCCCCTTTTTTAATGGCAAATATTTTTAACTGTGTAATTTAAACTCTGAAATATTTCTCATCCTGAAATAATGGTGTTAAAACACTTTATTTTTTCCTCCGGGTCTTATTTGTGTAAATATTTGCAGCTTTTTGAGAGGGTGACACCAATTTGGTTGGGGATGTGGGAAGGCCATAGAAAGAAATAGAAATACTAGAAGGGACAAAGTCTCTCAAACCACTGCAATTTGACTGAATGTCCATTCTAGTTATTCTATTTCTATTGGGAAGGCTAAATGGGACAGGAGTTTATAGCATGTTTCTTTTGATTATTTTTCCGGGAAAGTCTAGTTAGATGTTAATGAAACCATGTTCCTTCATAGGTCTGGGAGGTTGAGGTGAAGTACTTTGTATGACTCATCATTCAAGCATACTTGTCAAATAATCATATTCTACTTTTGGACACTCATTCTGTTAGACTTTAATTTGCACTGTCACCCTGccccctttccacacacccaaATAAGAACTGATCCCCCCTCTATCTCCACAAGCCTATCAGAAGTTACGTTTGATGGTTTGATAGTGAGGGAAAAAATGCTGTTGACCCCTAGTAGTTTGAGCTCTGTTTTTCTTGTTTGTCATCACAATCCATTTGAGTCTTGCCTTGTCTCCTATCACTTGATTGTCATGCTTGTTACAGCCACGTTTTACCCATCCGGAGAGCGAGACTTTCTGGATCCGTCTCTGTAAAGCCTTTGGGGTGCGTTTTGGTTTTGACCTGCGAGAACGACCTCTCGTAGAACGGTCTTGGATCATCAATACAATGGTAGGAGAGAGTAATGGTTTAGGAAAAGGTGTAAGGTGTAACAGGGTAGAATACATTAATTTCATGTAGGTTTGGAAGATATTCAAAAGTGTGTTCTGGATGTGGATCTGATGGGTTACTGTGGTTTGAGACATACGGAATAGATGCTGTTGTCTTTAAGGCCCTTATTGTGAGAAAGATGGGTTATTTTTAGTGAAGGAGACAGAATTAAGCCATAAACATTCAAGGTGTGTAAAACTCCATTCTAAGATGGCCCCTGTGCATGTTGCCACCTGTACGTATAAAACATGCATTCAGATCCCCCACCCATAGATTAAGTCACAGCATTTATGACAATGGACTGTTTCGCTCTTGCTTTTGAACAGACATGGCAAATTATGTTACGAGCTGGTCGTCAGAATGTCATTACTAAAGCAGCAATATGTATTGACTTGGGTACAGAAGTCATGTTTTTAATGATATGATGGGAGAGGAATCTCCAGTGATGTCTTTACTTGTGGATTGATATggtttgaatctgtgttttaccTTTTTGTGTTTTATGATGAAAGGGTGCGTTAGATTAAATCGATGCTTAATTGGATATTATAATTCCTCATGCTCCCTCAGGCATTGGGAACTGACAGCCAGTACTGGGGTAGAAATGAAGGATTTATATGCAAGTTTGGTCCCAATGTGGGcttttgtaatgtttctaaaacaaatTTTAAGTGTTAAAATGCTTAGTGAAAATACTAATCTGAAGAAGAAAAAACTTGACCTATTGATaatgtcagtttttttttttatatataaaaccTTTTAAAAAAAGCTTGTAATTACTTCATATTTTGGAGAAGGTTAAAATACTGTACATGTGAACATTGCTCTCTGTCATTGAGTGGTTTTGGGATGGGAGACTGGGATGGTTGGCCATCAAACAgttgggagggatggagagggggttaGAATTTTGTATGTTGGAGAGATAATTATGctacaattacattttttttctcaagTGTTTTTTATTCCAATGTGTCTGTATCCTTTTAATGTATCTTgataagaaaataaataaagattTGTTTTCTTTGTGGTCATATACACATTTCTCTTC

Function

NR:

description
metastasis-associated protein MTA2-like isoform X2

GO: NA

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615325.2 False 4755 mRNA 0.48 19 27439042 27471435
XM_021615326.2 True 4730 mRNA 0.48 18 27439049 27471435

Neighbor

gene id symbol gene type direction distance location
LOC110531857 LOC106577522 coding upstream 278 27407301 ~ 27438764 (+)
LOC110531855 LOC106577526 coding upstream 40019 27388891 ~ 27399023 (+)
LOC110531852 rtn3 coding upstream 63120 27340698 ~ 27375922 (+)
LOC110531847 NA coding upstream 171550 27256603 ~ 27267492 (+)
epdl1 LOC106577537 coding upstream 218655 27214119 ~ 27220387 (+)
taf6l taf6l coding downstream 8603 27480038 ~ 27487523 (+)
kcnk7 LOC106577521 coding downstream 16213 27487648 ~ 27490438 (+)
LOC110531861 LOC106608584 coding downstream 23030 27494465 ~ 27561525 (+)
LOC110533009 NA coding downstream 104006 27575441 ~ 27578315 (+)
LOC110531863 LOC100695098 coding downstream 117519 27588954 ~ 27599597 (+)
G787013 NA non-coding upstream 37333 27400367 ~ 27401709 (+)
G787016 NA non-coding upstream 38763 27399783 ~ 27400279 (+)
G787027 NA non-coding upstream 54060 27384716 ~ 27384982 (+)
G787002 NA non-coding upstream 61573 27376152 ~ 27377469 (+)
G787069 NA non-coding downstream 29944 27501379 ~ 27506375 (+)
G787107 NA non-coding downstream 113028 27584463 ~ 27584768 (+)
G787118 NA non-coding downstream 149542 27620977 ~ 27623770 (+)
G788583 NA non-coding downstream 232580 27704015 ~ 27704232 (+)
G787022 LOC106577527 other upstream 59378 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1025510 26413112 ~ 26413532 (+)
G786218 NA other upstream 1480175 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1696133 25712997 ~ 25742909 (+)
G786091 NA other upstream 1892075 25545231 ~ 25546967 (+)
rbpjb LOC106577485 other downstream 1868546 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2811240 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4124561 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4281900 31753182 ~ 31757502 (+)

Expression


Co-expression Network