taf6l (taf6l)


Basic Information

Item Value
gene id taf6l
gene name taf6l
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27480038 ~ 27487523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615328.2
CTGAAATTTGGCATCAAacaagtctctctggataagcaCATCTAAATGAAAATGTAATGTACATTTATAATTGCATTGGCTCACGCATCTATCAAGACTAGTATAGGACTTACAATGACTATTTGGGCAATTCAAACAGACTGCTTGATTCGAAAATGTGTTTTTAGGCGCCGTATGGATGATGGGACGCAATTGCGGCGCCCCGGGATACGCCAAATTGAGCTCATTATTGCTGTGCGCCTCTATTTTTGTAAAGTGGATGGCTCTGTATTGATAGGATAATACAAGACCTCCTGTCAACCAAACGCACCCACCTCTTGataacttccttcacaacagcgcTGCTCAGCGGCGCGTAAGAAGtgtgaatgccctgacttctgcagagtcCACATCACCCTTAATACTGCACAGCCAATGCAGACCTAGCCctgcgtcgttagggtttggcaggggtaCAGTCCAGTTGGTGGAGGTAATACATTAAAATTGGCTGCCAACCgccataatttaaaaaaaaaaaaaatccacagaAGAATTAAGTAGCGGTTGTGGGAGTGACGCACATTTGAGTGACATCGAATTGGACCAATCTTTGGAAGGCTGGCTTTCCGGAAAATGTCGGCGCACCCGAGTGAGGTTCCTGTGTGCGGTTTAGAGCAATAACCTTGCAAATTCATACTGTCCAGTTGATCTGCGGGTCTACCGGGACGCTGCCGTGAGCATGGAGGAGAGGCGCTTCGCGGAAGTCCCCAGAGAGTCTGTCAAACTCATGGCTGAGAGTGCGGGAGTAGAACTCAGCGACGATGTGGCTGCATTGTTGGCTGAAGATGTCTGCTACCGGCTTAGGGAAGCCACACAGAGCAGCTCTCAGTTCATGAGACATGCCAAGAGGAGGAAGCTGACAGTAGAGGACTTCAACAGAGCACTGCGCTGGAGCAATGTGGAGGCCATAGCTGGCTACGGTGCGCAAGATGCCCTACCTTTCCGACCGATCAAGGAGGGCGAGCTATTCTTTGTGGATGACCGTGATGTCAACCTGGTTGAACTTGCCCTGGCCACCAACATACCCAAGGGCTGTGCAGAGACCATGGTGCGAGTGAACGTGTCTTATCTGGATGGGAAAGGCAACCTGGAGCCTCAAGGTACAGTTCCCAGTGCTGTACAAACTCTCTCTGAGGATCTGCTCAAGTACTACCAGCAGATCACCCGGGCCATACTAGGAGAGGACCCACACCTTATGAAGGTGGCTTTGCTGGATCTCCAGTCCAACTCCAAGATTGCTGCCCTCCTGCCATATTTTGTATATGTCATCAGTGGGGTGAAGTCTGTGAGCCACGACCTGGAGCAGCTGAACCGTCTGCTGCACATGGTGAAGAGTCTGGTGCAGAACCCCTACCTGTACCTCGGCTCCTACGTGCGTAGCCTGGTGTCCAGCGTCATGTACTGCATCCTGGAGCCGCTGGCCGCCTCCATCAACCCCCTCAACGACCACTGGACCTTAAGGGACTACGCAGCACTTCTGCTCAGCCACATCTTCTGGACCCATGGAGACCTGGTCAGTGGTCTGTACCATCAGATTCTGCTGTCTCTGCAGAAGGTTCTGTCAGACCCGGTCCGCCCACTTTGTTCTCACTATGGAGCTGTCGTGGGGCTACACGCACTCGGGTGGAAGGCTGTTGAGCGGGTGTTATATCCACACCTGCCAGCCTACTGGGCTAACCTGCAAGCTGTCCTGGATGATTACTCCGTCTCCAACGCCCAGGTGAAAGCAGACGGACACAAGGTCTACGGAGCCATCCTGGTGGCGGTGGAGCGCCTGCTGAAGATGAAagccctgtctctgtcccagccAGCGGAGGGGAGCAGCAGCGCCCAGCCGGGCTCTGGGGGCGTGATGGGTTTCAGGGTGAGTTCCCCCGGGCTCAGCCCCCCTCCAGAGCCCCTCTCCGAGGCCGCCCTGGGCATCGCCAGCCACCTGCAGGGACCTGGGGGGGCTGGCACCCCCTGGGATGACTGGACCCCCGTCCCCCTGCCCGCCATGTACTGTGAGCTCTACTCCTTCTTCGGCGACAGCCTGGCGGTACGCTTCAGCACGGGCCCCAGCTTGGGAGGTTGCCCCCCGTCAGCCCCCTCCCAGCCCCCTGATACGAGGAAGGAGCCCCCTGGTCCCGCTGCTAACCCAGACACCACGCGCAAGATGCCTCAGCTCACTGCTAACCTCAACATCAGCCCCCGGCAAGACGGGAGCCCTCGCACTGAGCCCGCCCCACCTAGTCTAGCTGCCACTGCTCCAGGAAGgTCCCTGGCTcgctcttcctcctcatcctccatccAGCGCAGAAACTCCTCCTCCCGGCCGGGACAGCGCTCAGCGGGTCCATCCCGCGACGTGTTCACCAAGGCCCGTTTCCCCCCTCCTCAGACCGGACCCCCCACATTCTCCTTCCTCATCGGGGGACGTCAGATGGGCCGGCGCTGCCAGGGTCGCCGCTTCCAGACCAGCTTCAGCTCTCCCCCACCCCTGTCCACCGTACCGCCCCGTGCCTACGCCCACAAGCTGCCCGTCATCGGGAGGGTTGGCAAACCGGTGCGCCGCTGGACCTGCTCCCACTACTCCCTGCACCTgcccctctgagagagagagaaaagtgagacTATGGTTGGGGGTCAAGGCCTTGGAACAGGCTGAGGCTACCTCACTGCTCAGTAGTGCAGGTGGAGTTCCCTATATCCTCCCTCCCTATTCGGCCTATGACATAAGAGGTAGACTAGGACTAGAGGATAGGCACATTAGGTGGGAGGGACCCTACAGGAGTCGCATAAGAGACACTGACTCATGTACACATTGTTCTAGAGCTCCGATTTTCCAACCTGaaaatcactgacgtcatgatttgacctcattTGTtcttgagttcccagttgtcttgaatgcaccatAAGGACACTACTAGTTTGACAACTTCAGACTAATGGGCCTGGGGTGTGTTGAATAGTGGAATCCATGGATATGGAAGGAGTATTCGCACCGAGCTGAGAGCTTGACACCGTCTTAACACATGGACAATGTATTTTCTACCATGTACCTGAGTAATTTTACCAACCAGTACATGTATATGGACGATAGCCAATATCCTAAAATAAATATTCTTACAATATTA
>XM_021615327.2
TGAAATTTGGCATCAAacaagtctctctggataagcaCATCTAAATGAAAATGTAATGTACATTTATAATTGCATTGGCTCACGCATCTATCAAGACTAGTATAGGACTTACAATGACTATTTGGGCAATTCAAACAGACTGCTTGATTCGAAAATGTGTTTTTAGGCGCCGTATGGATGATGGGACGCAATTGCGGCGCCCCGGGATACGCCAAATTGAGCTCATTATTGCTGTGCGCCTCTATTTTTGTAAAGTGGATGGCTCTGTATTGATAGGATAATACAAGACCTCCTGTCAACCAAACGCACCCACCTCTTGataacttccttcacaacagcgcTGCTCAGCGGCGCGTAAGAAGtgtgaatgccctgacttctgcagagtcCACATCACCCTTAATACTGCACAGCCAATGCAGACCTAGCCctgcgtcgttagggtttggcaggggtaCAGTCCAGTTGGTGGAGGTAATACATTAAAATTGGCTGCCAACCgccataatttaaaaaaaaaaaaaatccacagaAGAATTAAGTAGCGGTTGTGGGAGTGACGCACATTTGAGTGACATCGAATTGGACCAATCTTTGGAAGGCTGGCTTTCCGGAAAATGTCGGCGCACCCGAGTGAGGTTCCTGTGTGCGGTTTAGAGCAATAACCTTGCAAATTCATACTGTCCAGTTGGTCTCGCTCCTCAGATCTGCGGGTCTACCGGGACGCTGCCGTGAGCATGGAGGAGAGGCGCTTCGCGGAAGTCCCCAGAGAGTCTGTCAAACTCATGGCTGAGAGTGCGGGAGTAGAACTCAGCGACGATGTGGCTGCATTGTTGGCTGAAGATGTCTGCTACCGGCTTAGGGAAGCCACACAGAGCAGCTCTCAGTTCATGAGACATGCCAAGAGGAGGAAGCTGACAGTAGAGGACTTCAACAGAGCACTGCGCTGGAGCAATGTGGAGGCCATAGCTGGCTACGGTGCGCAAGATGCCCTACCTTTCCGACCGATCAAGGAGGGCGAGCTATTCTTTGTGGATGACCGTGATGTCAACCTGGTTGAACTTGCCCTGGCCACCAACATACCCAAGGGCTGTGCAGAGACCATGGTGCGAGTGAACGTGTCTTATCTGGATGGGAAAGGCAACCTGGAGCCTCAAGGTACAGTTCCCAGTGCTGTACAAACTCTCTCTGAGGATCTGCTCAAGTACTACCAGCAGATCACCCGGGCCATACTAGGAGAGGACCCACACCTTATGAAGGTGGCTTTGCTGGATCTCCAGTCCAACTCCAAGATTGCTGCCCTCCTGCCATATTTTGTATATGTCATCAGTGGGGTGAAGTCTGTGAGCCACGACCTGGAGCAGCTGAACCGTCTGCTGCACATGGTGAAGAGTCTGGTGCAGAACCCCTACCTGTACCTCGGCTCCTACGTGCGTAGCCTGGTGTCCAGCGTCATGTACTGCATCCTGGAGCCGCTGGCCGCCTCCATCAACCCCCTCAACGACCACTGGACCTTAAGGGACTACGCAGCACTTCTGCTCAGCCACATCTTCTGGACCCATGGAGACCTGGTCAGTGGTCTGTACCATCAGATTCTGCTGTCTCTGCAGAAGGTTCTGTCAGACCCGGTCCGCCCACTTTGTTCTCACTATGGAGCTGTCGTGGGGCTACACGCACTCGGGTGGAAGGCTGTTGAGCGGGTGTTATATCCACACCTGCCAGCCTACTGGGCTAACCTGCAAGCTGTCCTGGATGATTACTCCGTCTCCAACGCCCAGGTGAAAGCAGACGGACACAAGGTCTACGGAGCCATCCTGGTGGCGGTGGAGCGCCTGCTGAAGATGAAagccctgtctctgtcccagccAGCGGAGGGGAGCAGCAGCGCCCAGCCGGGCTCTGGGGGCGTGATGGGTTTCAGGGTGAGTTCCCCCGGGCTCAGCCCCCCTCCAGAGCCCCTCTCCGAGGCCGCCCTGGGCATCGCCAGCCACCTGCAGGGACCTGGGGGGGCTGGCACCCCCTGGGATGACTGGACCCCCGTCCCCCTGCCCGCCATGTACTGTGAGCTCTACTCCTTCTTCGGCGACAGCCTGGCGGTACGCTTCAGCACGGGCCCCAGCTTGGGAGGTTGCCCCCCGTCAGCCCCCTCCCAGCCCCCTGATACGAGGAAGGAGCCCCCTGGTCCCGCTGCTAACCCAGACACCACGCGCAAGATGCCTCAGCTCACTGCTAACCTCAACATCAGCCCCCGGCAAGACGGGAGCCCTCGCACTGAGCCCGCCCCACCTAGTCTAGCTGCCACTGCTCCAGGAAGgTCCCTGGCTcgctcttcctcctcatcctccatccAGCGCAGAAACTCCTCCTCCCGGCCGGGACAGCGCTCAGCGGGTCCATCCCGCGACGTGTTCACCAAGGCCCGTTTCCCCCCTCCTCAGACCGGACCCCCCACATTCTCCTTCCTCATCGGGGGACGTCAGATGGGCCGGCGCTGCCAGGGTCGCCGCTTCCAGACCAGCTTCAGCTCTCCCCCACCCCTGTCCACCGTACCGCCCCGTGCCTACGCCCACAAGCTGCCCGTCATCGGGAGGGTTGGCAAACCGGTGCGCCGCTGGACCTGCTCCCACTACTCCCTGCACCTgcccctctgagagagagagaaaagtgagacTATGGTTGGGGGTCAAGGCCTTGGAACAGGCTGAGGCTACCTCACTGCTCAGTAGTGCAGGTGGAGTTCCCTATATCCTCCCTCCCTATTCGGCCTATGACATAAGAGGTAGACTAGGACTAGAGGATAGGCACATTAGGTGGGAGGGACCCTACAGGAGTCGCATAAGAGACACTGACTCATGTACACATTGTTCTAGAGCTCCGATTTTCCAACCTGaaaatcactgacgtcatgatttgacctcattTGTtcttgagttcccagttgtcttgaatgcaccatAAGGACACTACTAGTTTGACAACTTCAGACTAATGGGCCTGGGGTGTGTTGAATAGTGGAATCCATGGATATGGAAGGAGTATTCGCACCGAGCTGAGAGCTTGACACCGTCTTAACACATGGACAATGTATTTTCTACCATGTACCTGAGTAATTTTACCAACCAGTACATGTATATGGACGATAGCCAATATCCTAAAATAAATATTCTTACAATATTA
>TU896363
CTGCTAACCCAGACACCACGCGCAAGATGCCTCAGCTCACTGCTAACCTCAACATCAGCCCCCGGCAAGACGGGAGCCCTCGCACTGAGCCCGCCCCACCTAGTCTAGCTGCCACTGCTCCAGGAAGgTCCCTGGCTcgctcttcctcctcatcctccatccAGCGCAGAAACTCCTCCTCCCGGCCGGGACAGCGCTCAGCGGGTCCATCCCGCGACGTGTTCACCAAGGCCCGTTTCCCCCCTCCTCAGACCGGACCCCCCACATTCTCCTTCCTCATCGGGGGACGTCAGATGGGCCGGCGCTGCCAGGGTCGCCGCTTCCAGACCAGCTTCAGCTCTCCCCCACCCCTGTCCACCGTACCGCCCCGTGCCTACGCCCACAAGCTGCCCGTCATCGGGAGGGTTGGCAAACCGGTGCGCCGCTGGACCTGCTCCCACTACTCCCTGCACCTgcccctctgagagagagagaaaagtgagacTATGGTTGGGGGTCAAGGCCTTGGAACAGGCTGAGGCTACCTCACTGCTCAGTAGTGCAGGTGGAGTTCCCTATATCCTCCCTCCCTATTCGGCCTATGACATAAGAGGTAGACTAGGACTAGAGGATAGGCACATTAGGTGGGAGGGACCCTACAGGAGTCGCATAAGAGACACTGACTCATGTACACATTGTTCTAGAGCTCCGATTTTCCAACCTGaaaatcactgacgtcatgatttgacctcattTGTtcttgagttcccagttgtcttgaatgcaccatAAGGACACTACTAGTTTGACAACTTCAGACTAATGGGCCTGGGGTGTGTTGAATAGTGGAATCCATGGATATGGAAGGAGTATTCGCACCGAGCTGAGAGCTTGACACCGTCTTAACACATGGACAATGTATTTTCTACCATGTACCTGAGTAATTTTACCAACCAGTACATGTATATGGACGATAGCCAATATCCTAAAATAAATATTCTTACAATATTACatattttcca

Function

symbol description
taf6l Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of STAGA complex. Orthologous to human TAF6L (TATA-box binding protein associated factor 6 like).

NR:

description
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615328.2 False 3164 mRNA 0.55 12 27480038 27487512
XM_021615327.2 False 3177 mRNA 0.55 12 27480039 27487512
TU896363 True 1001 TUCP 0.54 2 27485794 27487523

Neighbor

gene id symbol gene type direction distance location
LOC110531858 LOC106577523 coding upstream 8603 27439042 ~ 27471435 (+)
LOC110531857 LOC106577522 coding upstream 41274 27407301 ~ 27438764 (+)
LOC110531855 LOC106577526 coding upstream 81015 27388891 ~ 27399023 (+)
LOC110531852 rtn3 coding upstream 104116 27340698 ~ 27375922 (+)
LOC110531847 NA coding upstream 212546 27256603 ~ 27267492 (+)
kcnk7 LOC106577521 coding downstream 136 27487648 ~ 27490438 (+)
LOC110531861 LOC106608584 coding downstream 6953 27494465 ~ 27561525 (+)
LOC110533009 NA coding downstream 87929 27575441 ~ 27578315 (+)
LOC110531863 LOC100695098 coding downstream 101442 27588954 ~ 27599597 (+)
LOC110531865 LOC106577518 coding downstream 146124 27633636 ~ 27647365 (+)
G787013 NA non-coding upstream 78329 27400367 ~ 27401709 (+)
G787016 NA non-coding upstream 79759 27399783 ~ 27400279 (+)
G787027 NA non-coding upstream 95056 27384716 ~ 27384982 (+)
G787002 NA non-coding upstream 102569 27376152 ~ 27377469 (+)
G787069 NA non-coding downstream 13867 27501379 ~ 27506375 (+)
G787107 NA non-coding downstream 96951 27584463 ~ 27584768 (+)
G787118 NA non-coding downstream 133465 27620977 ~ 27623770 (+)
G788583 NA non-coding downstream 216503 27704015 ~ 27704232 (+)
G787022 LOC106577527 other upstream 100374 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1066506 26413112 ~ 26413532 (+)
G786218 NA other upstream 1521171 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1737129 25712997 ~ 25742909 (+)
G786091 NA other upstream 1933071 25545231 ~ 25546967 (+)
rbpjb LOC106577485 other downstream 1852469 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2795163 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4108484 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4265823 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 4635170 32122682 ~ 32124851 (+)

Expression


Co-expression Network