LOC110533009


Basic Information

Item Value
gene id LOC110533009
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27575441 ~ 27578315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474915.2
ATTCAGCTTGGACTTACTTTGAGATGGACGCTACCAACAATTTCAATGAGGATGGATAAGGGTGTTCATGGACATAGTATAAAGCCATAGATATTAGAATTGTGGGATGGATGGATACAGTTGTTGGAAACTCAATTGAAACAAAGCAAGCCATAATGAATAGGCCTACAGATGATCATGCAATGTTGAACATGTTTTCTTTGTTGCTGTAAGTATATGTATGAAAAGTGTATAATGTAGTTGACTACCTGTcataattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcgtgcctgCCTGCATACGTGTGTGACTTTCCTAGGTTGGGGGATGACTTGCGTGCGTTTGTGTTGCTGACTCTCCAAGAAGATATACAGCAACAAATACTACAGGCAGACAGTGGCCATCCGCATGCCGGTCAAGTGGGTGGCCATAGAGAGCCTATTAGAGTCCATCTTTAACAGCAATAGTGCCGTGTGGTCATTTGGGGTCACCATGTGGGAGATAGTGTCTAGGGAAAGGACACCGTATCCTGGAGTCCACAACTATCAGCTCCTGAAGATGCTGAACACTGGACACCGATTCAAACCACCTTAGTGTGATGAGAAACTttatctctctccccccaggtATGAGGTGATACTGAGTTTTTGGCACATGGAACTGGGACAGAGGCCTGGTTTCAGGGAGCTTGGGGAGAGGCTGAAAGCCCTTCTGTGTGAGCTGCCACCACTGGAGGCTAGCCAGGAGGCCCAATACataaaccagggcctgtaggctGCCAATGGGGTGCCAACGAGCACGGAGGACACAGCAGCCTCGATTTTCGAGGAGGGCACGGTAGGGAACATGTGGGTTTGTGGTTACTGCTAAAACTCCACCCAAGAAAGAGGACGAGGACTCACccaaggaagagaaggaggaggaaggataTCTGCTGGGTATTAAAAGTGGATCCGCTGTGAAGACAATGGATAATGAAAGAGCTGTGGGTGTTTTTATAGATGCTTTTTGTGACAGATAATCTGTTCTTTAAACCGTGCTCTGGTGTTTTTGTGTTTCAGTCAGTTTGGTGTTTTATGTTCTGTCAACTACAGTAATCCAAGCGTGTTTGAATGTATTTATTCAATGTGTTAGCTCTGTGGTTAGAGATCAGTGCACAACTCAACATATCAAATATCAATCAATTCAAATCACCTTAACACTTTTTTAtggtttagtctaatcttgattattgtccagccgTTGTGGTCCAGTGcagcaaggaaagacctagttaagctgcagctagcccagaacagagtggcacattttgctcttcattgtaatcagagggctgatataaatactatgcatgccagtctctcttggctaagtgTTTAGGATTGACTGACTGCAttacttcttctttttataagaaacaatgtgttgaaaatctGAAATAGTTTTCATAGTCAactcacacacagctctgacacacacacttatcctaccagacatgccaccaggggtctttttacAGTcctcaaatccagaacaaattcaagaaagcgtacagtattatatagagcccttattgcatggaacttccttccatctcatattgctcgaATAAACAGCAACCCTGGTTTAAAAAACCcccagataaagcaacacctcatgacacaacgcctctcccctgtttgacctagatagtttgtgtgtat
>TU896452
ggtttagtctaatcttgattattgtccagccgTTGTGGTCCAGTGcagcaaggaaagacctagttaagctgcagctagcccagaacagagtggcacattttgctcttcattgtaatcagagggctgatataaatactatgcatgccagtctctcttggctaagtgTTTAGGATTGACTGACTGCAttacttcttctttttataagaaacaatgtgttgaaaatctGAAATAGTTTTCATAGTCAactcacacacagctctgacacacacacttatcctaccagacatgccaccaggggtctttttacAGTcctcaaatccagaacaaattcaagaaagcgtacagtattatatagagcccttattgcatggaacttccttccatctcatattgctcgaATAAACAGCAACCCTGGTTTAAAAAACCcccagataaagcaacacctcatgacacaacgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474915.2 False 1759 mRNA 0.44 3 27575441 27578315
TU896452 True 458 lncRNA 0.41 1 27577823 27578280

Neighbor

gene id symbol gene type direction distance location
LOC110531861 LOC106608584 coding upstream 13916 27494465 ~ 27561525 (+)
kcnk7 LOC106577521 coding upstream 85003 27487648 ~ 27490438 (+)
taf6l taf6l coding upstream 87929 27480038 ~ 27487523 (+)
LOC110531858 LOC106577523 coding upstream 104006 27439042 ~ 27471435 (+)
LOC110531857 LOC106577522 coding upstream 136677 27407301 ~ 27438764 (+)
LOC110531863 LOC100695098 coding downstream 10639 27588954 ~ 27599597 (+)
LOC110531865 LOC106577518 coding downstream 55321 27633636 ~ 27647365 (+)
trnaa-ugc-34 NA coding downstream 80166 27658481 ~ 27658556 (+)
LOC110531867 LOC106577513 coding downstream 190321 27768636 ~ 27772723 (+)
ank2b LOC103361685 coding downstream 417564 27995879 ~ 28163412 (+)
G787069 NA non-coding upstream 69066 27501379 ~ 27506375 (+)
G787013 NA non-coding upstream 173732 27400367 ~ 27401709 (+)
G787016 NA non-coding upstream 175162 27399783 ~ 27400279 (+)
LOC110531855 LOC106577526 non-coding upstream 177810 27388891 ~ 27399023 (+)
G787027 NA non-coding upstream 190459 27384716 ~ 27384982 (+)
G787107 NA non-coding downstream 6148 27584463 ~ 27584768 (+)
G787118 NA non-coding downstream 42662 27620977 ~ 27623770 (+)
G788583 NA non-coding downstream 125700 27704015 ~ 27704232 (+)
G788588 NA non-coding downstream 129996 27708311 ~ 27708510 (+)
G788596 NA non-coding downstream 136190 27714505 ~ 27714714 (+)
G787022 LOC106577527 other upstream 195777 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1161909 26413112 ~ 26413532 (+)
G786218 NA other upstream 1616574 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1832532 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 1761666 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2704360 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4017681 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4175020 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 4544367 32122682 ~ 32124851 (+)

Expression


Co-expression Network