LOC110531864 (LOC106577516)


Basic Information

Item Value
gene id LOC110531864
gene name LOC106577516
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27601045 ~ 27623830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615333.2
GGAATCCTGATCAACCGCAGAGAGGCAATAATGTGGGCGATGGCGTGTCGGCGTTACTCCTGTGTTTTTTCCAAGGTAGAGCGCTAAAGAGAGATGGGCGTGACAACGGGCTGTCTGGACCACGAATAGTCTCCGGGAGGAAAGAGCATCTCGCAGTCTCCGATGTACCCGATGACAACGGAGAGGCAATGCCGACTGTCGGGTCCAATGGTTGTTCCATCCAACATACCTTCGCAGGTGGTGTTTTAACAACGGCACGACGTCCGATATTGAGGCCGCACGGGGATTGACACAATCCAAAAGGGAATAAAAAAATCTAACGGACCTCCTTCGGCACACATTAGCGGGTTGTGGCAGTGGGTTGATTAGAAAGTGCGTGGCAGAGAACAGctGTGAGCCCACATTGTGGCCGGCGGGCATGGTTTTGGAGGGTAGCTCGGAGGCCCTGTGTCCCCCGCCCTCACTGGAGCTGCGCCCGTCCTGCAACAAGAGCCAGCCCTCGCCTCCCCTGGGCTCATGCTCCACGCCCCACGACGGACTCTTCCCCGGGGACAAGGAGCCCGTCAAATACGGGGAGCTCATCGTCTTAGGGCACAATGGTTCCTTGGCCAATGGGGACAAGGGGCGAAGGAGAAGTCGCCTGGCCCTCTACAAGAGACCCAAAGCCAACGGGGTCAAACCTGATGTCATCCACAATGTCTCCACCCCTCTGGTGTCAAAGGCCCTCAGCAACAAAAGCCAGCACAGCATCTCTTACACCCTGTCCAGGAGTCACTCGGTCATTGTAGAGTACACTCATGACACCAACACAGACATGTTTCAGATCGGGCGTTCTACAGAGAGCATGATTGACTTTGTGGTGACGGACACAGCGGGCAGCAGCACCAGTGGTGGTGGCGGTGGGTGGCAGGTCCAGGGGGCGGCAGGCGAGGGggtcggaggaggaggaggggggcagtCGGCCCAGAGCACAATCTCCCGCTACGCGTGCCGCATAATGTGCGAGCGCAACGCCCCTTACACGGCCCGCATCTACGCCGCCGGCTTCGACTCCTCCAAAAACATCTTCCTGGGGGAGCGGGCTGCCAAATGGCGAACGTCAGACGGCTTGATGGACGGCCTGACCACCAATGGCGTGCTGGTGATGCACCCGGCGGGAGACTTTGTGTCGGAGCCGGCGCCAGGCGTGTGGCGGGAGATCTCGGTGTGCGGGAACGTCTTCGCCCTGCGGGAGACGCGCTCGGCCCAACAGAGGGGAAAATTGGTGGAGAACGAGTCCAACACCCTGCAGGACGGCTCTTTGATTGACCTGTGCGGTGCCACCCTCCTGTGGCGTACCCCGATGGGCCTGCGCCGCACCCCCACCCTCAAGCAGCTGGAGTCCCTCCGCCAGGAGCTGAATGCCGCCCGGCCCCAGTGCCCCGTGGGTTTTAACACCCTGGCCTTCCCCAGCCTGGCCCGGCGAGAGATTGTTGACAAGAAGCAGCCCTGGGTCTATGTCAACTGTGGTCACGTGCACGGCTACCACAACTGGGGCTACCGGAAAGACAAGGGCCACAACGTGGGCCCCGGGGGGACGGCTCCGGCGAGTACCGGGGAGAGGGAGTGCCCCATGTGCCGGCGCGTGGGCCCCTACGTGCCCCTGTGGCTTGGCTGCGAGGGCGGGCTGTACCTGGACGCTGGGCCACCGACGCACGCCTTCTGCCCCTGCGGCCACGTGTGCTCTGAAAAAACTGTGGCGGGCTGGAGCCAAATCCCGCTGCCGCACGGAACGCACGCCTTCCATGCCGCATGCCCCTTCTGCGGCACCTGGCTGACGGGCGAGCAGGGGCACATCAAACTCATCTTTCAGGGGCCCGTCGACTGAGGCCGGAGCTGAGTGGCTGAGATAAGGGGCAGGCTAGAGGGAAGGTGGACTGGGGAAATGTCTAAAAGGACTGTCTGTAAGGAAACGTGAAGGGACAAAAATAGCCAAGACTGTCGAAATGACGATGGCCTGAACCGAAGAAGAGAGGCAAACGTGATGGAAGTAGATGATGCATAAATGGCATTTGAGTTGTATTTGGGGAAGATGTAAATAAAAGGTGTTGAAATGAA
>XM_021615334.2
GCAGGTAGGTGGAGCCAGCACATTGTGCAAATCTTACGCAAGAATCGCGGAATCCTGATCAACCGCAGAGAGGCAATAATGTGGGCGATGGCGTGTCGGCGTTACTCCTGTGTTTTTTCCAAGGTAGAGCGCTAAAGAGAGATGGGCGTGACAACGGGCTGTCTGGACCACGAATAGTCTCCGGGAGGAAAGAGCATCTCGCAGTCTCCGATGTACCCGATGACAACGGAGAGGCAATGCCGACTGTCGGGTCCAATGGTTGTTCCATCCAACATACCTTCGCAGGTGGTGTTTTAACAACGGCACGACGTCCGATATTGAGGCCGCACGGGGATTGACACAATCCAAAAGGGAATAAAAAAATCTAACGGACCTCCTTCGGCACACATTAGCGGctGTGAGCCCACATTGTGGCCGGCGGGCATGGTTTTGGAGGGTAGCTCGGAGGCCCTGTGTCCCCCGCCCTCACTGGAGCTGCGCCCGTCCTGCAACAAGAGCCAGCCCTCGCCTCCCCTGGGCTCATGCTCCACGCCCCACGACGGACTCTTCCCCGGGGACAAGGAGCCCGTCAAATACGGGGAGCTCATCGTCTTAGGGCACAATGGTTCCTTGGCCAATGGGGACAAGGGGCGAAGGAGAAGTCGCCTGGCCCTCTACAAGAGACCCAAAGCCAACGGGGTCAAACCTGATGTCATCCACAATGTCTCCACCCCTCTGGTGTCAAAGGCCCTCAGCAACAAAAGCCAGCACAGCATCTCTTACACCCTGTCCAGGAGTCACTCGGTCATTGTAGAGTACACTCATGACACCAACACAGACATGTTTCAGATCGGGCGTTCTACAGAGAGCATGATTGACTTTGTGGTGACGGACACAGCGGGCAGCAGCACCAGTGGTGGTGGCGGTGGGTGGCAGGTCCAGGGGGCGGCAGGCGAGGGggtcggaggaggaggaggggggcagtCGGCCCAGAGCACAATCTCCCGCTACGCGTGCCGCATAATGTGCGAGCGCAACGCCCCTTACACGGCCCGCATCTACGCCGCCGGCTTCGACTCCTCCAAAAACATCTTCCTGGGGGAGCGGGCTGCCAAATGGCGAACGTCAGACGGCTTGATGGACGGCCTGACCACCAATGGCGTGCTGGTGATGCACCCGGCGGGAGACTTTGTGTCGGAGCCGGCGCCAGGCGTGTGGCGGGAGATCTCGGTGTGCGGGAACGTCTTCGCCCTGCGGGAGACGCGCTCGGCCCAACAGAGGGGAAAATTGGTGGAGAACGAGTCCAACACCCTGCAGGACGGCTCTTTGATTGACCTGTGCGGTGCCACCCTCCTGTGGCGTACCCCGATGGGCCTGCGCCGCACCCCCACCCTCAAGCAGCTGGAGTCCCTCCGCCAGGAGCTGAATGCCGCCCGGCCCCAGTGCCCCGTGGGTTTTAACACCCTGGCCTTCCCCAGCCTGGCCCGGCGAGAGATTGTTGACAAGAAGCAGCCCTGGGTCTATGTCAACTGTGGTCACGTGCACGGCTACCACAACTGGGGCTACCGGAAAGACAAGGGCCACAACGTGGGCCCCGGGGGGACGGCTCCGGCGAGTACCGGGGAGAGGGAGTGCCCCATGTGCCGGCGCGTGGGCCCCTACGTGCCCCTGTGGCTTGGCTGCGAGGGCGGGCTGTACCTGGACGCTGGGCCACCGACGCACGCCTTCTGCCCCTGCGGCCACGTGTGCTCTGAAAAAACTGTGGCGGGCTGGAGCCAAATCCCGCTGCCGCACGGAACGCACGCCTTCCATGCCGCATGCCCCTTCTGCGGCACCTGGCTGACGGGCGAGCAGGGGCACATCAAACTCATCTTTCAGGGGCCCGTCGACTGAGGCCGGAGCTGAGTGGCTGAGATAAGGGGCAGGCTAGAGGGAAGGTGGACTGGGGAAATGTCTAAAAGGACTGTCTGTAAGGAAACGTGAAGGGACAAAAATAGCCAAGACTGTCGAAATGACGATGGCCTGAACCGAAGAAGAGAGGCAAACGTGATGGAAGTAGATGATGCATAAATGGCATTTGAGTTGTATTTGGGGAAGATGTAAATAAAAGGTGTTGAAATGAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase pellino homolog 1-like isoform X2

GO: NA

KEGG:

id description
K11964 PELI; pellino

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615333.2 False 2097 mRNA 0.60 8 27601045 27623782
XM_021615334.2 True 2102 mRNA 0.60 7 27601045 27623830

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-33 NA coding downstream 116604 27484368 ~ 27484441 (-)
ecsit ecsit coding downstream 194360 27401836 ~ 27406685 (-)
LOC110531854 LOC106577527 coding downstream 219560 27376312 ~ 27381485 (-)
LOC110531851 LOC106577528 coding downstream 264965 27327518 ~ 27336080 (-)
LOC110531850 LOC106577529 coding downstream 273639 27305847 ~ 27327406 (-)
LOC100136672 sstr1b coding upstream 197744 27821574 ~ 27834414 (-)
chi chi coding upstream 243518 27867348 ~ 27872371 (-)
LOC110531868 LOC106577509 coding upstream 270206 27894036 ~ 27896838 (-)
camk2d1 LOC106577507 coding upstream 539838 28163668 ~ 28283460 (-)
LOC110531871 LOC106577503 coding upstream 670345 28294175 ~ 28310607 (-)
G788511 NA non-coding downstream 14241 27586540 ~ 27586804 (-)
G788508 NA non-coding downstream 19381 27581340 ~ 27581664 (-)
G788500 NA non-coding downstream 31260 27569474 ~ 27569785 (-)
G788397 NA non-coding downstream 39528 27559537 ~ 27561517 (-)
G788405 NA non-coding downstream 200835 27399307 ~ 27400210 (-)
G788589 NA non-coding upstream 84441 27708271 ~ 27708474 (-)
G788602 NA non-coding upstream 94326 27718156 ~ 27718491 (-)
G788604 NA non-coding upstream 95263 27719093 ~ 27719308 (-)
G788606 NA non-coding upstream 96006 27719836 ~ 27720080 (-)
G788607 NA non-coding upstream 96347 27720177 ~ 27720405 (-)
G788495 NA other downstream 37520 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 132723 27463292 ~ 27468322 (-)
G788173 NA other downstream 664281 26936484 ~ 26936764 (-)
G788172 NA other downstream 665539 26935127 ~ 26935506 (-)
G789228 LOC106577504 other upstream 521390 28145220 ~ 28146979 (-)
G789863 LOC100194703 other upstream 904990 28528820 ~ 28652471 (-)
G789945 NA other upstream 1039621 28663451 ~ 28666058 (-)
LOC110531881 LOC106577491 other upstream 1419606 29042575 ~ 29045196 (-)

Expression


Co-expression Network