LOC110531865 (LOC106577518)


Basic Information

Item Value
gene id LOC110531865
gene name LOC106577518
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27633636 ~ 27647365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615335.2
gagtaaaatggtcaggaTGAGGGAGGTGTTCTCTCATATATGTCTggagttagcttgggtgcttgattgCCGTTGTGAGATCAGAACCCTCGGACCAACCcttactcctcggccagagcgtccagtgtgcgctctgaatttacgaactaaccatctgacaacgctctgaatgtACGAACGCCCAAGAGCGAGCCCTGAGCGCTCTCTGGCACTCCAAAGtaaatttacgaacgcaccctatGATTGATCCTCAGTGCATTGATCATGGGAAGGTGTGCAGCCGACGCAACGTGATGACGTTATATTATACCGCCAGGATATGTGATCGAGAACTGACATTTTTCTTATCTTGTTTTTATGAATCTTTTCACGAATTAAAGTGGTCAAGGAATTACTACATCACGACATAAGCTCGTCGTTTAAACACAACCATTGACCCTGTCCCCTCGCCATGGTAGAGGATGACGATTTAACGCCAAATCTTATGTCAAACCAAGTGTGGCGCGGCAATGGCGAGTTTGTGCCTCCAGACGGAATATGCTGGGTGTCTGTACTGTCCTGTTTGCTGCTTGCCTGCTCCTACGTCGGGAGTTTATACGTATGGAGAAGTGACTTACCCAGAGACCACCCGGCCGTTATCAAGAGGCGATTCACTAGTGTCCTGATTGTATCTGCCGTGTCGCCTGTCTTCGTGTGGGCATGGAAAATGTACACTGGTGTGATGCCTGGTCCCTCGTTGCTGGCTCTGATGGGCATTCGCTTTGAGGGCCTCATCCCAGCCATCATACTGCCTCTGCTCCTCACCATGGTGCTGTTCGTTGGCCCCCTGATCCAGCTGGCTATGGACTGCCCCTGGGGCTTCATAGATGGGATACGGGTCACCTTTGACCCGTGGTTCTGGGCTCTGTGCCTCAGTGACATGCGCTGGCTGAGGAACCAGGTGGTGGCCCCTCTGACTGAGGAGCTGGTGTTCAGGGCCTGTATGCTGCCCATGCTGGTACCCTGCACCAGTCCTTCCACTGCCATCTTCACCTGCCCCCTCTTCTTCGGAGTTGCCCACTTCCATCATGTGATCGAGCTGCTGCGTTTCAGACAGGGCACCCTGTCTGGGATCTTTCTCGCTGCAGTATTCCAGTTCTCCTACACTGCTGTCTTTGGAGCTTACACTGCCTTCATATTCATCAGGACAGGTCACCTGGTGGGGCCGGTGCTGTGCCACTCGTTCTGTAACCACATGGGCTTCCCTGCCCTTGGCATGGCCCTGGAGCACCCCCATCGTCTCACCGTCCTGTCCTGCTACTTGCTGGGGGTCCTCCTtttccttcttctcctcttccccctcacaGACCCCATCTTCTACGGCCTTCCCACCCCCGTCTGCACCCTCGCCTCCGTCCCCAGTTCCCTCTGCGTCTCCTGATCCCACCCCCACCAAACACCCCTCTGTATTAGATGGACCTATCCACTGAGCGGGTCACCACCACCAGCCGAAAGGAGGAGCGGTCCAAGAACGAGGGGTGTTTTAGGTCTTCGGTCATGCCCGCTTGAGTCTGATTTCTCTGGTGGGATGTGGGAAGGTGAGCAGAGGTGAGGGTTTAGGGTATGTCAGGTATGGACACTCAATGCTATGGGTTGTCTCTACTATATATGCTGCTGGGGGGGAGCAGGGTAACTTAAATAGCCATTCCTTATGTTCAGGTCGCATTGGctttcagtcagtcagttagccagtcagtcaataGGCTGGCCTATGTGGTCTGTAGTGTAGACTCAACAAGGAACACTATCTGGCTGTGACACGAGGCGCTGTAGTAGTAATACTCTAGAGATTCGTGGTGAATACGTCAGTGTTTTCATAGGTCCTAGATGCTGAATACGAGTATTTATTTACACATCTGCATGTTTCTATAATGTAGTGTTTATTTGTTTTATTGGTGGGGGATGTTGAGGGTTGGACAGTATTGTTACTATTGTAAAGGGTTGGACTTTTTTTTTCCATTACCTCTTCAATGACAGTTTAGCCACGATTCTCTCAGCTTTTAGCTCAAGCTGATGTGTGAATTGGCTGCAAAGCATTTCTATCCAACTGTTTAAGACGCCAGACAATTCGTGTTAGGCGATATCACAAAGGGTACAGTCTTTACCTAGCCCTGTGTTCAATCATTCACTCTAGTTGACGCTCATTCCAAATATCCATTCCAAGTCATGCAGACAGAAGCCTATAATCACTAAGCTAACAATACCATTGCTCATTTGTTGGGCCAGGAGTATTTCCCTGACCATGTGAacctggtcaggaaaaactctgggcccctACCATTCGCTTCACACACAGTTCTACCCAGGGTTATCTATGTTAATTTTATTTGAGTGTTTAAAGGGGGAATTACCTTAAGCTGGGGTGCGATGACAGACCGTTTCCCCCTCAAGGGACTCAAACCCTCTAGAACAATCGGGTGTTTTCATATATATGTAGTTTTGAATGCTATCTACCCACTACTTAGCATGCTGCTACATGGTGCAATACGGATGTCAGACAAGACGGCACGTTTACATTCTTCGCGCACACCGAGCTATACTCCAAAAGAAGATAATGTACAGACTCCGACAGTGTTACATCGCAATGTTTATCCACTTACTCACTCATCTCAACTGAAACTTTGCATAATTTTTTTGAAAATACTTTACTTATTTGACCAGGCTGTGAACATTGTAGTCCATTTCACTGTATAGACAGCTGGTTtaagtgaaaatgtgtttttttgtttgtttttttaaccaaATTTTAcacgtatttagcagatgttactgcgggtgtagcgaaatgcttggtgGGTTGTGGATTTTTACGGGGAACGCTAATGGACTTTTCTCCCTTTTTATGAACCCGGCGCAATACTATGTAACAACTCCAGTTGACTAGACCAGAAGTGTAGAGGGGTTTATAAACTAGAAGATTGCATCACACTGAATGTATTGAAATGTGATGTCAAGGTAAATGAATTAACTAATCATTTTGTAAACAGACTTCACTGTGTAAATTGGATCCATATTTTTCGAGAGGCCCCTGCAAAAGGCTCTTAACATTCACTGACAGAAAGATAGATCTGTGAAGCTTTCTACCACAGCAGCTCCGAGTTGTCAGTCAGCATGTGTACTGTATAATCTATGAAGTAGTTACATTACGCTCTTCAGCAATAACTTAGTGGTTGGAAAAGGACCAAAATCAGGGAATTATCTGAAATAGCTGTATATATGTGAATAAAAAAGTATATATGCCCATTCCTGTCGTTTAGAGATGAAATGTTAAATACTATGGTGCTTGGAGGTTTTGACATCAGAATAATGATCAGCCAGTATTTTGAGTAGATTGTTTGTTTAAGCCGACCTCAGATGGGCCATATATCCCCAAGTTGAAGGTTTTAATATACATTCTCTTGAATGAACCTGCAAGGTGCATGAATCCAGACCAGCTGTAATGATCTAAAATGTACGCCAGAGAGCGCCAGAGTACCATGTCTGGGTGTCGTGCTGTAGAAATGTGAATCACAGGAACCTGGGCCCTTCGCACATCCGTTCATTAAGTTACTCTGATGGGTGGTCATCCGTCACTTGAAAAACCAATCAGTTCTTTTCTTATTCTGTtatttcctcttcctctcatcaGACGGCGCCCCGTCCCAATCGAGTAGTTGGAAATAGTCCTAGAGAGGAAAGGGGAGTTTGACCCGAAGAACTTAGAtagctacctgtctctctgttgcGCATTCTCTCTGATCAATTAAACAAAGACTCTAGCCTTTCTTTTTCGAGTCAAACTCTAAACTATCTTGCTGTCTCCGTCTCACATCCAAAATGatgcccttgaatgttttggcctGAGGCGTTGGCCTAGCCCCTACAAAACCATTTTGGGAGTTCAATCAATCACCGGTACGCAGAATCAGAGATGTTTACCCCTACAGAGACAGGCTTGTCAGGTTCAGGTAGCTGATAGATTTACTTTGTTGTCGAAATTCACACATTCACGCCTCCAATGTCGAAGCTGTGTTGAATTTGTATTCGGTAGGGTCAGAAGAAGCACACGTAGAGAGATGTTTCAATACAATCACGTTTCATCTGCGCTCAACCGTTGTTTATCATTCTCCCACATCATCAACATTGTCCCCTTttggaaaatacattttttttgtgaagattgTCCCTGGCTCGTATTGTATGGATCCTGCCTTAGGATTCACACTTCAGGCTACTTCTCACCACTGCTTTTACTTTATTTTCCTGTCATTGACTTGAATTGAAATCCGGTAGACATAACTAGGCTTCAGAAATGCTGACTCCACTTTCCTGCTGTTGTATgtgttttttcttcatttttctcTCAAACAATCGTATCAACAGTACTCTAAGTAGTGACTTAGAGTATATGCATAGAGCGGACACACAGCAGTAGAtacaggaatatatatatatatatatatttttgtaactGAATATGTAGCTCTGCTATTTTAGTAAAACCACACAACAGAATGATTTTAAAGCTTGGATTTTTCAGACTCGTCGAATACGTGCTATGACTCTGACCcggttgtaaaaaaaaacacacacacaaaaaacaatatTCAGATGTTTTTATTGAAGACTTTATTTTATAAATCAAATCTATTTTGGTGACATGGACTTGAATGTACTGATATGTGCATGTGTATTTTGTGTGTGCAAtgccattttttggggggagacTTACCAATCTTGAATGGCCAGTGTTTTTATGATGACAATCTTTTATGGGATCTTATAGAAATCGCACACTGCAAAAAAATAATCTCAGTCATTCAGAAATAAACTAGCTAATTTTATAAATCCTC

Function

NR:

description
CAAX prenyl protease 2-like

GO: NA

KEGG:

id description
K08658 RCE1, FACE2; prenyl protein peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615335.2 True 4871 mRNA 0.45 8 27633636 27647365

Neighbor

gene id symbol gene type direction distance location
LOC110531863 LOC100695098 coding upstream 34039 27588954 ~ 27599597 (+)
LOC110533009 NA coding upstream 55321 27575441 ~ 27578315 (+)
LOC110531861 LOC106608584 coding upstream 72111 27494465 ~ 27561525 (+)
kcnk7 LOC106577521 coding upstream 143198 27487648 ~ 27490438 (+)
taf6l taf6l coding upstream 146124 27480038 ~ 27487523 (+)
trnaa-ugc-34 NA coding downstream 11116 27658481 ~ 27658556 (+)
LOC110531867 LOC106577513 coding downstream 121271 27768636 ~ 27772723 (+)
ank2b LOC103361685 coding downstream 348514 27995879 ~ 28163412 (+)
LOC110531872 LOC106577502 coding downstream 684441 28331806 ~ 28340457 (+)
LOC110531876 LOC106577496 coding downstream 800897 28448262 ~ 28548376 (+)
G787118 NA non-coding upstream 9866 27620977 ~ 27623770 (+)
G787107 NA non-coding upstream 48868 27584463 ~ 27584768 (+)
G787069 NA non-coding upstream 127261 27501379 ~ 27506375 (+)
G787013 NA non-coding upstream 231927 27400367 ~ 27401709 (+)
G788583 NA non-coding downstream 56650 27704015 ~ 27704232 (+)
G788588 NA non-coding downstream 60946 27708311 ~ 27708510 (+)
G788596 NA non-coding downstream 67140 27714505 ~ 27714714 (+)
G788605 NA non-coding downstream 72180 27719545 ~ 27719913 (+)
G788638 NA non-coding downstream 93216 27740581 ~ 27740834 (+)
G787022 LOC106577527 other upstream 253972 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1220104 26413112 ~ 26413532 (+)
G786218 NA other upstream 1674769 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1890727 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 1692616 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2635310 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 3948631 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4105970 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 4475317 32122682 ~ 32124851 (+)

Expression


Co-expression Network