LOC110531867 (LOC106577513)


Basic Information

Item Value
gene id LOC110531867
gene name LOC106577513
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27768636 ~ 27772723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615336.2
CAATCTGCAAGCACTCAACTCCAGCATAGAAGAGTGAGAagtttgagagagaaagagaaagagagtgaagttTTGAGAGGTAAAGTGCAGATGAGGAGAGAAAAGTTGGTATATTAAGGAAAAAACAAGACGAAACAAATACTAAAAAAAttaagaggagagaaaaaaaatcaaggaAAGTATAGAGTGGGCaaaaaagagaacaagagagagagttggagaagtGAGCCGTGGAGAGTGAACTAACGATGGGTTCCCCAGTGCGGTGTGCTGCTGTTCTAGTCCTCTCACTACTGGGTCTGTTCTGTTATACTCCCCCTGTGTGGGGCCAGGATCTACAAGAGAGGGACGCTCTGTGCAACGAGGACGGCTGCTTCGTGGTCTACTTCCAGCGCAAGACCTTCCTGGACTCCTGGAGGAGCTGCAAGGAGAAGGGAGGCAACCTGGCCACAGTCAAACTCCAGGAGGAAGCTGACACTATCGCTGCTCTCTTCTCTGGCGTGGAGCTACGTGGCCCGAGGACCAAGGTCCAGGTGTGGATCGGTCTCCAGAGACAGCCTCGCCAGTGTTCCGCCTCTCGCCCTCTCCGTGGGTTCACCTGGACTACAGGTGACCAAGATACCCGCTACACCAATTGGCTGCGGGACGACTCGCCCAGTACTTGTTCAGCCCCACGCTGTGTGGTAATGACCTATGGCACAGCAGCCCATGAGCAGCATGATCATTTTAAATGGCTGGACGGCTCGTGTTCGGTACCAGTGGATGGCTACCTGTGCCGCTACACGTACAAGGGCATGTGCCCGGCGGTTTGGAGCGAGGGGGGCGGCAATGCCCTATATAGTACCCCCTTCAGCCTCCTCAGTAGCCTCCTTACCCACGTCCCCTTTGGATCTGTAGCCACAGTGCCCTGCCCGGGGGGCTCCAAGGAGGAGCagtctgttctatgtgtgctaagGGAGGATGGCACTGTGGGGTGGTCCAGGGAGACGCCCCTCTGTTCCGACACTGGAGAGAAGAGCTGGTGCGATCGGAACAACGGAGGGTGTGAGCATTTCTGCCAGGAGGCCGGAGAGCACTACTACTGCGAGTGCTCGGACGGCTTCCAGCTCGGGGATGACGGGCAAACATGCGTCGCTGCCGACCCGTGCCACAGTGCCCCCTGTGAGTATGAGTGCCTGCCCCTGTCGGACGGCTACCGCTGTGCCTGCCCCGAGGGCTACATGCTTTCCCCGGATGAACGCGGTTGTCTGGATGTGGACGAGTGCCTGCAGAGCCCCTGCGAGCAGCTGTGCGTCAACGCCCCGGGGACCTTCGAGTGCCGCTGCCGTGAGGGTTACCGACCGGTCGAGGAGGGCGAATGTGAGGATGTGGACGAGTGTATGGAGGACCCGTGCGAACACGCCTGCGAGAATACACCCGGCTCTCACGTTTGCCACTGTCATCTGGGCTTTTCCCCTCCTACCGAGGAACCCTCCCACTGCCAGGACACTGACGAGTGTCAGATCCCTGGGACATGTCAGCAGATGTGCGTGAACTACGAGGGGGGCTTCGAGTGTTACTGCGAGGTGGGCTACGAGCTACTCTCTGACCACTTCTCCTGCAGGAagataggggagggagaggactCATTTCCAGCAGCCACTCCCTCCTACCCTTGGGTCACCCGCCACCCCGGCTCCATGTGGGACCCCCACGAACCCTTGTACCCCTGGACCCCTGCACAGACCAACACTGACTGGCCTCTGGAGACGGAAGAGTCCCTGGACTGGCTCACAGACCCCCCCAGGGTGGAGAATGATGTCATCTGGGTCACCAGCGCACCCCAGGAGGAACCCGTCCCAAACCACCACCCATTCATGGTCCCCCCCATGGAAGAgcccgaggaggaggaggaagaagaagaagaggaggagtataCACTGGACTGGAGCACCATGATTTTGAATTCTCCAGCCCAGGTCCAGCCCGAGCTAGAGTCTACGCCCAGTCCCTCTCCCAGCCCCTCTCCCAGCCCCTCTCCCAgcccctctcccacctctacccccaccccaaTTCCCACATCCGACTGGTATGAGGAGGAAGATGACGAAACCACTACCAGTTCCTCAGTCCTCCCTACTTCCACTATCTCGGGAGGGGCGTGGAACTGGCTCTGGTTCAGCCCCGCCAGCCATGATCAAGTATTCACCACGTCGCAGGAGCCAATCACTGACCAGCACGTCCCCGCATCCAACTATGATGATACTGATGATAATGAGGAAGAGGGGGACATTGACAATTGGAAGGTGACTTCCCTTCCAGAGCAGGATCAGGGCCCGGGTGAGAACCAGGACCAGCAcaccccctccctgcctcctcctgtggctCCCAAAACCCCAATTACCCCCAACCAGGGCGTGGTGGAGGGGGTGAATGAGAGGGAGCCGGCCCAGGAGGACGAGAGCAGCCAGAAGCAGGGTGGTGGCAACTGGCTGCTGGTGGGCCTCCTGGTGCCCCTCTGCATCTTCACCATTATTATGGTGGCACTGGGTATCGTCTACTGCACCCGCTGCGCTGTCACGCCGCGCAACACGACGGCCACCAACTGCTACCATTGGATCTCCGGAGCGCACGACAAGCAAGGCGCGCCCAATCCCAGCAAGGGGATACAGTCACATGTTTAAACAGATGAATGAGGAAAGACTTGTACATAAATAAACTGTTAAataagagacagaaagaaggtAAGAGAGTGGTGGTTGTTGTACTGTATCTGCCTCCTCCCGTCCCATTGCCACTGTGTTGTCGTACTGGGAGTCTTTGAACACTTGAATGTGTCTGTGGAATATCGGTTGAAAGAGAAGAACAGGGAAGCAATACTAAAAAAACACTAATCCCTTTCATGGGGTCCTTTACATGTTGTAGAAAAAAATTGCATCATTGTTGCTTACACTGATCTCAAAGCACAATATATAGGCCTATGATTGCACTATAGGTACAATAGAAACCGTCCGTTGGGATTGTTGTTGAATACATCTGGTCATATTTACGGATGctgtgggaatatactgtcaatATATCACCAGTGCCATCTGAAACCAAAGCCAAAGAACTGTACTGTAGCTTTTAGCATTTTTGTAGTCCATGAAATCTGGGTGTGGGTCTTTCAAAAAATGCTGAGGTTTTTAATGCTCAATTGAGCTCATTTCCAAGTATGTATTGCAAATGACTATTTACGTCAACTTTGTTAAAAGAAGCATCACATGCTGCTTCATATTTAGCTATGCAAGCTATGCAAGCATGACTGTCATGACGCTGTTGAGGAAAAGCAGTCACTCGGATATTACTTTTATGGCTTGTGCTTTTTAAAGGAATCGGAATAAATCAACTCACAACACAGACCGAAAAAATGGTATACGcctgtatatgtgtttgtgttacTATAATTGTGTACTGTATAATTTGTAGCAATGAAGTTTTTTAGAAAATGTGTTAGCGTCATGATTCCTGATTTAATTAAGTGTCTTTTGTTTTATATAGACCACACAAAGCTCTTGGTAATTCCatggaatgtctgtctgtctgagggggaTGTTTCCTTCCATTCAACTCCGATTAAACACTCCTAGTCCTCTCACCCACATTCACTCATATGGGTTAGAGTGCAGATGTTAGATGTGTTCGTATTACACACTATAGGGACTGCAATGGGGGTCACAACAGGCTCCCGGTTGACTTTAGCATTGACCTTGTTAGCGGAGTAGTGGTCTTCCAATCGTTCCCTAACCCCATGTCACATAACTCTTTAGCATGCCTCCCTCCCCATTGTCACAGGCTTGCCCATAACATTACATGGACTTTAGCCATGGTGGAGCAGTATCAATCGTTAGGTGTTTGAAATCAATGCTCCCTTTAGTTACTTGGGAAGTAAGTGCGGTCCCCATTCAAAGGAGGACGTGTACAATGTCAGTGACGGACAATCAAATCAACTGAAGATCTGCCTTCTGTATCAAAGGACTGTTAAATTATGCCTGAAGCCTTTTCATTTCTGTTACCTGTTACGTTTTAAGTAATTGCTAATTAAATGTTAACGATAAGGGTTCCATCAA
>TU898085
AAGCTCTTGGTAATTCCatggaatgtctgtctgtctgagggggaTGTTTCCTTCCATTCAACTCCGATTAAACACTCCTAGTCCTCTCACCCACATTCACTCATATGGGTTAGAGTGCAGATGTTAGATGTGTTCGTATTACACACTATAGGGACTGCAATGGGGGTCACAACAGGCTCCCGGTTGACTTTAGCATTGACCTTGTTAGCGGAGTAGTGGTCTTCCAATCGTTCCCTAACCCCATGTCACATAACTCTTTAGCATGCCTCCCTCCCCATTGTCACAGGCTTGCCCATAACATTACATGGACTTTAGCCATGGTGGAGCAGTATCAATCGTTAGGTGTTTGAAATCAATGCTCCCTTTAGTTACTTGGGAAGTAAGTGCGGTCCCCATTCAAAGGAGGACGTGTACAATGTCAGTGACGGACAATCAAATCAACTGAAGATCTGCCTTCTGTATCAAAGGACTGTTAAATTATGCCTGAAGCCTTTTCATTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615336.2 False 4088 mRNA 0.52 1 27768636 27772723
TU898085 True 503 lncRNA 0.45 1 27772163 27772665

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-34 NA coding upstream 110080 27658481 ~ 27658556 (+)
LOC110531865 LOC106577518 coding upstream 121271 27633636 ~ 27647365 (+)
LOC110531863 LOC100695098 coding upstream 169039 27588954 ~ 27599597 (+)
LOC110533009 NA coding upstream 190321 27575441 ~ 27578315 (+)
LOC110531861 LOC106608584 coding upstream 207111 27494465 ~ 27561525 (+)
ank2b LOC103361685 coding downstream 223156 27995879 ~ 28163412 (+)
LOC110531872 LOC106577502 coding downstream 559083 28331806 ~ 28340457 (+)
LOC110531876 LOC106577496 coding downstream 675539 28448262 ~ 28548376 (+)
LOC118966204 NA coding downstream 724494 28497217 ~ 28497272 (+)
LOC110531878 LOC106577495 coding downstream 781046 28553769 ~ 28663634 (+)
G788671 NA non-coding upstream 6294 27762110 ~ 27762342 (+)
G788667 NA non-coding upstream 8936 27759482 ~ 27759700 (+)
G788661 NA non-coding upstream 13234 27755182 ~ 27755402 (+)
G788657 NA non-coding upstream 14313 27754050 ~ 27754323 (+)
G788641 NA non-coding upstream 24789 27743607 ~ 27743847 (+)
G788688 NA non-coding downstream 11344 27784067 ~ 27784274 (+)
G788693 NA non-coding downstream 15626 27788349 ~ 27788635 (+)
G788701 NA non-coding downstream 26473 27799196 ~ 27799737 (+)
G788753 NA non-coding downstream 47131 27819854 ~ 27867779 (+)
G788771 NA non-coding downstream 58731 27831454 ~ 27831909 (+)
taf6l taf6l other upstream 281113 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 388972 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1355104 26413112 ~ 26413532 (+)
G786218 NA other upstream 1809769 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 2025727 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 1567258 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2509952 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 3823273 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 3980612 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 4349959 32122682 ~ 32124851 (+)

Expression


Co-expression Network