LOC100136672 (sstr1b)


Basic Information

Item Value
gene id LOC100136672
gene name sstr1b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27821574 ~ 27834414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124643.1
CAAAAACTGAGGTAAACTGGTCAAATGGAAAACATGGCCACCAACCGGTCCGGTGACTACCCAGAATACCCCACCGGCCTTCCCTACAACTCCAGCCTAGACTATGAGGACTACGACCAGGAACTTGATGCCAGTAAGATCATCATCCCCTCCATCTACGCACTGGTCTGCTGTGTGGGTCTTACAGGCAATGCCATGGTCATCTATGTCATCCTCAAATACGCCAAGATGAAAACTGCCACCAATATTTATATATTAAATCTGGCAATTGCAGATGAACTGTTTATGTTGAGTGTTCCGTTCTTGGCGACTTCAGCGGCTGTACGTCATTGGCCGTTTGGCTCGCTCATGTGCCGTCTGGTGTTGAGCGTGGACGGCATCAACATGTTTACATCTATCTTCTGTCTGACGGTGTTGAGCGTGGATCGATATGTGGCCGTGGTTCACCCTATCAAGGCTGCCCGCTACCGCCGTCCCACCGTGGCAAAGGTGGTCAACGTCTGCGTGTGGGGCCTCTCGCTCCTCGTCATCCTCCCCATCATCATCTTTGCTGACACGGTCCCGGCGCAGGATGGCGGCGTGGACTGCAACTTCCTGTGGCCTGAGGCTGCATGGTCAGTGGCGTTTGTGGTGTACACCTTCCTGCTCGGCTTCCTGCTTCCCGTAGGTGCTATCTGCCTCTGCTACTGCCTGATGGTGGCGCGCATGCGTGCGGTCGGGCTCAAAGCCGGTTGGCTGCAGCGAAGGCGCTCAGAGAAAAAGATCACGCGGATGGTGTTGTGCATTGTGGCGGTCTTCGTGCTCTGCTGGATGCCCTTCTACATCGTCCAGCTGGTCAGCGTGTTCCACCGCCCCCCGGACGCCATGGTCACCCAGCTCTTTGTCATCCTGAGTTACGCCAACAGCGGCGCCAACCCCATCCTCTACGGCTTCGTGTCCGATAACTTCCGGCGGTCGTTCCAGAGGATTGTGTGTTTCCGTTGGCTGGAGTCTGGGCTGGATGGAGAACAGGTGGACTACCGTGCCGTAGCTCTGAAGAGACAGGCCACCAATGGACAGAAAGACTTCCCTAAGGAATGCCTGGCATCTGGTATGGTGTTCCAGAATGGGACATGCACGTCACGCACGACTACACTGTGACGGGAGTCAATAGTTGTAGATGATAAAATACAATGCCACACGGCGAATGATGGGATAGCAACGTATGACAACGAATGACACCACACATGAACAATGAGTGAGGCCCGTGGTGGATGAGAACGACACGTGTCTTTGAAAATAAAGTGGCATGTTCACATACTCCCTGCTGCTCTGAAGTGCGACAGTCATATGGTCTTTGTTTTTCCCGCTGGATAAAGAGCATTATTTGACTGTGTGGCACAGGAGGTTGTATGCACAAAATAGAGATGCTAGATGTCAGTGTGATGGTTGACTGACTACAAGCCAAGTCCAATGAGGTTTCTCATACTGAGGTGGTGCAGCTATGACAAGTTTATCATTTTGACTTGGTCTTCTACCCGAAGTTTAGAGCACATGTGTTTGTTTGACCTATGTCCTTCTGTCTGTAAACCTATTTATTGTACTGTATATGCTATATATgtaattatgtatttatttatttggggtTGGATCTTTGGGgctgctgtgttctctctgttgCTTTCACTTGCTCAAACACATACATGCAAGCAGCCCAAAGGGACAACTGCAAATAGCcaagctgaaataaatgtttAATTTGGAA
>XM_021614367.2
ccctagcccccgacacataaatgATTGTCTGTGGGAAAGAGTGACAGAGATACGTGTGTAGTGACTTGGGGgatggtaagagagagagagagacagagacagagagtagagcaTGTTAGTGCGTAAGCTACGAGAACCACAGATtgaaaacgagagagagggaagagcgcTGGAGACCGAAACAGCGACTGAGGATAGCGGCTAATGGACGGAGTGAGAGTGAAGACACACTTCTCCACAGGTCTTCCAACTTCTTATCCATCACTGGAGAGCGAGAACAAGAGAACGGAGGAGAGgagttttttttctctttctgttttccctctccctcatctccatcAGTGACTTGAACAGGCTGACTGGGATGGGACTCTGACAGTGCTCAGCTACCTGGATACGGCATCCTGGAGCCGACTCAAAGAAAATGGGAGTGTAAACGTATCCCGGGGATGAGCTCGTATCAAAGCCAGGAATTGTCATGTACTTGTTCAGCCGGGGTGTAGGGACTGAATGACCACCCATGAGAACCCGCTCCCCTCTATCTCCACGGAAACAGAAACATGGAATGGTGAAAGTGTAGAATTCCCCACAGCACCTCTTACCAAAGACCACTCCTGATGAGTGTGCCATTCGGGTAGCTGGGATCAACCAGACAGAACAGGGCAACTCCCAACCACTCCAGGTCCAATTCCTTCCAATAGGACATTCTAAATCAAGAGAAATGAATGTTCTCCCTTGGCGAGGTTCCTTGTGTTTGAATGAGACCCAGAAACCTCGCCCTGATTTCACCACCTGCAAACAGATGGGTAGTAAGATGTGAGTTTATTTGTGAATGAATATGGAATGTTACACATTTGGCTGCCAAGAATTCATCCGTGGATGAGGGCGTTTCAGCCTAAGGACACAAATTGCTTCAGTCAGTGGAGAGTAGAAACTACCAAGGCTGGGCTCTATAATGAGAAATCCATGAGAAACAGAGCAACAGGAGAATTGAGAGACTCAAGGACTCTGATTTGGTTTAGGGTTAACCCCCTCTATGTTGCATGTGGACCGTGAGGTTGGAGAATAACACTTTACAGACATTACATTCCCTCCTGTCTCTTCAGAGCTGCACCTCTACAAAAAAGAGGATCTTTCACGCTCCCACTGCTCCTTCATCACTCCTTTTTGACCCATTTATCAAAGGAATATAACGGAAGTCAATGACACTTTAGCTATTAACACCAGAAAATCAGAACAAAGCAGAAGAAGTGAACTTCAGGGTTCCATAGTGAGAAAAACTCTGCTCTATCCATTCTTTTTGAACCAATTATGAAAGGAGTTTAACAGAGATCCATGATACATTGTACTAAAGCAACACTTTGGTGTTAACAGAGAGCCAGCTAAGAGCATTGAGAAGAGTACTATATTCTATAATGGGACTGAGAGACTCAAATCCGTAGGTATGACAGACTGGACTGAATAGGAAAACATACACACGAAGTCGCATCTTAGTTCCAAGGGGCCTAGGAGAGGCAAAAACTGAGGTAAACTGGTCAAATGGAAAACATGGCCACCAACCGGTCCGGTGACTACCCAGAATACCCCACCGGCCTTCCCTACAACTCCAGCCTAGACTATGAGGACTACGACCAGGAACTTGATGCCAGTAAGATCATCATCCCCTCCATCTACGCACTGGTCTGCTGTGTGGGTCTTACAGGCAATGCCATGGTCATCTATGTCATCCTCAAATACGCCAAGATGAAAACTGCCACCAATATTTATATATTAAATCTGGCAATTGCAGATGAACTGTTTATGTTGAGTGTTCCGTTCTTGGCGACTTCAGCGGCTGTACGTCATTGGCCGTTTGGCTCGCTCATGTGCCGTCTGGTGTTGAGCGTGGACGGCATCAACATGTTTACATCTATCTTCTGTCTGACGGTGTTGAGCGTGGATCGATATGTGGCCGTGGTTCACCCTATCAAGGCTGCCCGCTACCGCCGTCCCACCGTGGCAAAGGTGGTCAACGTCTGCGTGTGGGGCCTCTCGCTCCTCGTCATCCTCCCCATCATCATCTTTGCTGACACGGTCCCGGCGCAGGATGGCGGCGTGGACTGCAACTTCCTGTGGCCTGAGGCTGCATGGTCAGTGGCGTTTGTGGTGTACACCTTCCTGCTCGGCTTCCTGCTTCCCGTAGGTGCTATCTGCCTCTGCTACTGCCTGATGGTGGCGCGCATGCGTGCGGTCGGGCTCAAAGCCGGTTGGCTGCAGCGAAGGCGCTCAGAGAAAAAGATCACGCGGATGGTGTTGTGCATTGTGGCGGTCTTCGTGCTCTGCTGGATGCCCTTCTACATCGTCCAGCTGGTCAGCGTGTTCCACCGCCCCCCGGACGCCATGGTCACCCAGCTCTTTGTCATCCTGAGTTACGCCAACAGCGGCGCCAACCCCATCCTCTACGGCTTCGTGTCCGATAACTTCCGGCGGTCGTTCCAGAGGATTGTGTGTTTCCGTTGGCTGGAGTCTGGGCTGGATGGAGAACAGGTGGACTACCGTGCCGTAGCTCTGAAGAGACAGGCCACCAATGGACAGAAAGACTTCCCTAAGGAATGCCTGGCATCTGGTATGGTGTTCCAGAATGGGACATGCACGTCACGCACGACTACACTGTGACGGGAGTCAATAGTTGTAGATGATAAAATACAATGCCACACGGCGAATGATGGGATAGCAACGTATGACAACGAATGACACCACACATGAACAATGAGTGAGGCCCGTGGTGGATGAGAACGACACGTGTCTTTGAAAATAAAGTGGCATGTTCACATACTCCCTGCTGCTCTGAAGTGCGACAGTCATATGGTCTTTGTTTTTCCCGCTGGATAAAGAGCATTATTTGACTGTGTGGCACAGGAGGTTGTATGCACAAAATAGAGATGCTAGATGTCAGTGTGATGGTTGACTGACTACAAGCCAAGTCCAATGAGGTTTCTCATACTGAGGTGGTGCAGCTATGACAAGTTTATCATTTTGACTTGGTCTTCTACCCGAAGTTTAGAGCACATGTGTTTGTTTGACCTATGTCCTTCTGTCTGTAAACCTATTTATTGTACTGTATATGCTATATATgtaattatgtatttatttatttggggtTGGATCTTTGGGgctgctgtgttctctctgttgCTTTCACTTGCTCAAACACATACATGCAAGCAGCCCAAAGGGACAACTGCAAATAGCcaagctgaaataaatgtttAATTTGGAA
>TU898444
cgagagagagggaagagcgcTGGAGACCGAAACAGCGACTGAGGATAGCGGCTAATGGACGGAGTGAGAGTGAAGACACACTTCTCCACAGGTCTTCCAACTTCTTATCCATCACTGGAGAGCGAGAACAAGAGAACGGAGGAGAGgagttttttttctctttctgttttccctctccctcatctccatcAGTGACTTGAACAGGCTGACTGGGATGGGACTCTGACAGTGCTCAGCTACCTGGATACGGCATCCTGGAGCCGACTCAAAGAAAATGGGAGTGTAAACGTATCCCGGGGATGAGCTCGTATCAAAGCCAGGAATTGTCATGTACTTGTTCAGCCGGGGTGTAGGGACTGAATGACCACCCATGAGAACCCGCTCCCCTCTATCTCCACGGAAACAGAAACATGGAATGGTGAAAGTGTAGAATTCCCCACAGCACCTCTTACCAAAGACCACTCCTGATGAGTGTGCCATTCGGGTAGCTGGGATCAACCAGACAGAACAGGGCAACTCCCAACCACTCCAGGTCCAATTCCTTCCAATAGGACATTCTAAATCAAGAGAAATGAATGTTCTCCCTTGGCGAGGTTCCTTGTGTTTGAATGAGACCCAGAAACCTCGCCCTGATTTCACCACCTGCAAACAGATGGGTAGTAAGATGTGAGTTTATTTGTGAATGAATATGGAATGTTACACATTTGGCTGCCAAGAATTCATCCGTGGATGAGGGCGTTTCAGCCTAAGGACACAAATTGCTTCAGTCAGTGGAGAGTAGAAACTACCAAGGCTGGGCTCTATAATGAGAAATCCATGAGAAACAGAGCAACAGGAGAATTGAGAGACTCAAGGACTCTGATTTGGTTTAGGGTTAACCCCCTCTATGTTGCATGTGGACCGTGAGGTTGGAGAATAACACTTTACAGACATTACATTCCCTCCTGTCTCTTCAGAGCTGCACCTCTACAAAAAAGAGGATCTTTCACGCTCCCACTGCTCCTTCATCACTCCTTTTTGACCCATTTATCAAAGGAATATAACGGAAGTCAATGACACTTTAGCTATTAACACCAGAAAATCAGAACAAAGCAGAAGAAGTGAACTTCAGGGTTCCATAGTGAGAAAAACTCTGCTCTATCCATTCTTTTTGAACCAATTATGAAAGGAGTTTAACAGAGATCCATGATACATTGTACTAAAGCAACACTTTGGTGTTAACAGAGAGCCAGCTAAGAGCATTGAGAAGAGTACTATATTCTATAATGGGACTGAGAGACTCAAATCCGTAGGTATGACAGACTGGACTGAATAGGAAAACATACACACGAAGTCGCATCTTAGTTCCAAGGGGCCTAGGAGAGGCAAAAACTGAGGTAAACTGGTCAAATGGAAAACATGGCCACCAACCGGTCCGGTGACTACCCAGAATACCCCACCGGCCTTCCCTACAACTCCAGCCTAGACTATGAGGACTACGACCAGGAACTTGATGCCAGTAAGATCATCATCCCCTCCATCTACGCACTGGTCTGCTGTGTGGGTCTTACAGGCAATGCCATGGTCATCTATGTCATCCTCAAATACGCCAAGATGAAAACTGCCACCAATATTTATATATTAAATCTGGCAATTGCAGATGAACTGTTTATGTTGAGTGTTCCGTTCTTGGCGACTTCAGCGGCTGTACGTCATTGGCCGTTTGGCTCGCTCATGTGCCGTCTGGTGTTGAGCGTGGACGGCATCAACATGTTTACATCTATCTTCTGTCTGACGGTGTTGAGCGTGGATCGATATGTGGCCGTGGTTCACCCTATCAAGGCTGCCCGCTACCGCCGTCCCACCGTGGCAAAGGTGGTCAACGTCTGCGTGTGGGGCCTCTCGCTCCTCGTCATCCTCCCC

Function

symbol description
sstr1b Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SSTR4 (somatostatin receptor 4).

NR:

description
somatostatin receptor type 1 subtype B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124643.1 False 1744 mRNA 0.51 1 27821574 27823317
XM_021614367.2 False 3259 mRNA 0.48 2 27821574 27834414
TU898444 True 1902 TUCP 0.48 2 27822781 27834264

Neighbor

gene id symbol gene type direction distance location
LOC110531864 LOC106577516 coding downstream 197744 27601045 ~ 27623830 (-)
trnaa-ugc-33 NA coding downstream 337133 27484368 ~ 27484441 (-)
ecsit ecsit coding downstream 414889 27401836 ~ 27406685 (-)
LOC110531854 LOC106577527 coding downstream 440089 27376312 ~ 27381485 (-)
LOC110531851 LOC106577528 coding downstream 485494 27327518 ~ 27336080 (-)
chi chi coding upstream 32934 27867348 ~ 27872371 (-)
LOC110531868 LOC106577509 coding upstream 59622 27894036 ~ 27896838 (-)
camk2d1 LOC106577507 coding upstream 329254 28163668 ~ 28283460 (-)
LOC110531871 LOC106577503 coding upstream 459761 28294175 ~ 28310607 (-)
LOC110531873 LOC106577501 coding upstream 507725 28342139 ~ 28432006 (-)
G788738 NA non-coding downstream 14412 27806958 ~ 27807162 (-)
G788724 NA non-coding downstream 28457 27792791 ~ 27793117 (-)
G788715 NA non-coding downstream 39154 27782010 ~ 27782420 (-)
G788713 NA non-coding downstream 41005 27780139 ~ 27780569 (-)
G788707 NA non-coding downstream 48124 27773214 ~ 27773450 (-)
G789131 NA non-coding upstream 161477 27995891 ~ 28064595 (-)
G789268 NA non-coding upstream 431374 28265788 ~ 28266250 (-)
G789397 NA non-coding upstream 480413 28314827 ~ 28315047 (-)
G789403 NA non-coding upstream 493445 28327859 ~ 28328172 (-)
G788495 NA other downstream 258049 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 353252 27463292 ~ 27468322 (-)
G788173 NA other downstream 884810 26936484 ~ 26936764 (-)
G788172 NA other downstream 886068 26935127 ~ 26935506 (-)
G789228 LOC106577504 other upstream 310806 28145220 ~ 28146979 (-)
G789863 LOC100194703 other upstream 694406 28528820 ~ 28652471 (-)
G789945 NA other upstream 829037 28663451 ~ 28666058 (-)
LOC110531881 LOC106577491 other upstream 1209022 29042575 ~ 29045196 (-)
G790535 NA other upstream 1214484 29048898 ~ 29049244 (-)

Expression


Co-expression Network