LOC110531868 (LOC106577509)


Basic Information

Item Value
gene id LOC110531868
gene name LOC106577509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27894036 ~ 27896838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615338.2
GAAGTTATTTTTTAAGTGTTGCTGACAAGACTCGCCTTCTAACCAACCACAGTAGCtagtctgttagctagctaactttaaaGCCTCCAAAGACATGAGCCGCAAAAGAAACCACAGTTTCACCGAAACAAGCCTTTCTCCCGACCCCCAAAACACATTCATGGACACGCCGGGGTCTACGGCGAGAGCCGAAGATGATTTCTTGGAATTCGAACCCGACGAGGAGCTACTCTGCTCGGTGAGCGACATCACCGAACACCTTGGAAGAAACATAACAGTGGTGCTCGAAACAGCATTGTCCGAAATCAGGAAAATTGTCAGCGTCAGGATACGGGTTCTGAAAATTGAGCTAAGGGAGAAAACAGACGAAATTGAAGTCCTTAAAGCAAGGCTGGAGATACAAAGAGACGGTAGGGACCCGTACCCCAGCGGAATGACCACCGAGGCATCATCTGTATTCCGAAAATCAGACTTCCATTCGGGCAGCAAGCACAGCAACGACCCCAAGAAAGCCAAACCAGCCATGCCTGGCGTAAAGAAAGAAAACATCAATGCAATTTGCGATTATCTGATGAAAGATAAGAATTCACGGGGGGCTGAAGCGGACAGCGACCCGAGCAATCCTCCGTCTGGTAGTGACAGGGACAGCCGCCACGAACCCCAGCCGCACTCCCTCAACCTGTGGCCGGACACCATCCCTGACGCGGGGTCTGGGGATGAGGAGTCGGACTCGAACACGGATGACCTATTCGGCATACTGCCATCGGGAAGCAAACGGATCTACGACTATGAATGGATGACGGGTGTGGAGTACACGTCGGATTTGAAAGGTATGAGGGAGCCTAAATGTGAGACAATACCAGATGAAGACGGAGAAGAAAAAGACGAGGAAGAGGGTGATGAGTCAAACGAAAGGCATGGTGGATTGGAGCATCCCTCAGCACCTTTCTCCCATGACGCCCACACCCCTGACTTTCCCCTGGCCCCCCAGGCCTCttcaggaggggagggggaaagtTCTGTGGAGGACCATGTGGATCGACTAGaaccagGCCAGCAGTTTCCCTCCCACACATACCTCTGCCCGCTGTGTGGAACCTTCTGCCCCGACTCCTTGTTCCTGGAGGAACACATCAAACTGATACACGGCAACACCACCGGCACCCACAGCGCCCTGCAgtccacctccaccacactcctcaCCCTGGGGGAGGGTAGCAGTAACTCAAAGCGGGGGTTGGGGGTGCTGGAAGGTGGGAGCATGGGGGCTGGGTCTGGGGGGATGAGCCTAGCAAGAGGAGGAGGCGGGGGAGGTACAAGGGAGAAGAAAGTGGAAGGGGGCTACGAGTGTGGCGACTGTGGCCGCCATTTCAACTACTTGGGCAACCTACGGCAGCACCAGCGCATCCATACAGGGGAAAAGCCCTTCATATGCCCAGAGTGTGGGGAGAGGTTCCGGCACGCTGCCCGATTGAAGAGTCACCGGCTGGGGCACAATGGCGGGCAGAGCCCCTTCCCTTGCCCCCAGTGTGGGAAAGGCTTCCCGGTGCTCTCCGGCTTAAAGAGGCACCAGCGGGTGCATACAGGGGAGAGCCCCTACGCGTGCCAGCAGTGTGGGCGGCGCTTCAAGGAACTTGGTAACCTGTATACCCACCAGAGGATCCATAGTGGTGCCACACCCTATTGCTGCCAGCAATGTGGGAGGAGCTTCCGTCACCTGGGCACCTACAAGAGCCACCGCTGCACCCCAATACAGTGACAGTGACACTTGTTACCTTGGACCTAGGCTGGCCTACTGCTAAGTGTAGCCTAGCCATCGCAGGAGCCTATTGATTGATATGCTGTTGAGGAGACTGAGGCAGGAACATTGTCTGTCTAAAGACAAGCACCATACAGACTCAAAAGGGAGGGTGCCACGCTGGGAAAGGTCAAAGTGCATCATGATAAAGAGATGAAAGCATGACCCTGTTCCAATACTTCAGAAACACATCCCTCCTTCTCACTTTTGTGAAATAATCCATGACTTATTCAACATTATAAACTAGGtgttttgagccctgaatgctgatttggctgacaaccttggtatatcagaccgtatactgctctaattacggTGGTAACAATAATAGCGATAAGGcacctcaggccttattgcttaatgatagtataggtgaaagcaatatgtTTCGCCAaccccgagtggcacagcggtctaaggcactgcatctcagtgctag

Function

NR:

description
zinc finger protein 697-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615338.2 True 2240 mRNA 0.53 3 27894036 27896838

Neighbor

gene id symbol gene type direction distance location
chi chi coding downstream 21665 27867348 ~ 27872371 (-)
LOC100136672 sstr1b coding downstream 59622 27821574 ~ 27834414 (-)
LOC110531864 LOC106577516 coding downstream 270206 27601045 ~ 27623830 (-)
trnaa-ugc-33 NA coding downstream 409595 27484368 ~ 27484441 (-)
ecsit ecsit coding downstream 487351 27401836 ~ 27406685 (-)
camk2d1 LOC106577507 coding upstream 266830 28163668 ~ 28283460 (-)
LOC110531871 LOC106577503 coding upstream 397337 28294175 ~ 28310607 (-)
LOC110531873 LOC106577501 coding upstream 445301 28342139 ~ 28432006 (-)
LOC110531875 zcchc4 coding upstream 539703 28436541 ~ 28443621 (-)
LOC110531879 LOC106577493 coding upstream 770401 28667239 ~ 28993223 (-)
G789009 NA non-coding downstream 62074 27827524 ~ 27831962 (-)
G788738 NA non-coding downstream 86874 27806958 ~ 27807162 (-)
G788724 NA non-coding downstream 100919 27792791 ~ 27793117 (-)
G788715 NA non-coding downstream 111616 27782010 ~ 27782420 (-)
G788713 NA non-coding downstream 113467 27780139 ~ 27780569 (-)
G789131 NA non-coding upstream 99053 27995891 ~ 28064595 (-)
G789268 NA non-coding upstream 368950 28265788 ~ 28266250 (-)
G789397 NA non-coding upstream 417989 28314827 ~ 28315047 (-)
G789403 NA non-coding upstream 431021 28327859 ~ 28328172 (-)
G788495 NA other downstream 330511 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 425714 27463292 ~ 27468322 (-)
LOC110531854 LOC106577527 other downstream 512747 27376312 ~ 27381485 (-)
G788173 NA other downstream 957272 26936484 ~ 26936764 (-)
G789228 LOC106577504 other upstream 248382 28145220 ~ 28146979 (-)
G789863 LOC100194703 other upstream 631982 28528820 ~ 28652471 (-)
G789945 NA other upstream 766613 28663451 ~ 28666058 (-)
LOC110531881 LOC106577491 other upstream 1146598 29042575 ~ 29045196 (-)
G790535 NA other upstream 1152060 29048898 ~ 29049244 (-)

Expression


Co-expression Network