LOC110531872 (LOC106577502)


Basic Information

Item Value
gene id LOC110531872
gene name LOC106577502
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28331806 ~ 28340457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615349.2
CGCATGCGCAGGAAGTCCAACGCTAACAAATTTCAAACTGGGCAGCGGGTAGAAAGACTTGGCAAGAAAATACAATACAATTAAAGGATATAACTAAATAGTTAAATAATGACGAGCACACTGAAAGGTATTACCCTGAAAGGAAGCGCTGAGCTTGTGGCCGAGTTTTTCTCATTCGGTATCAACAGCATCCTGTACCAGCGAGGGATCTACCCTCCGGAGACGTTCTCCCGAGTCACCCAGTATGACATGAGCCTTCAACTCACTACTGACACCAAGCTGAAGAGCTACCTGACCAACGTGGTATCTCAACTCAAAGAGTGGCTGTTTGACTGCACAGTGCAGAAGCTGGTGCTGGTGATCACATGTCTGGAGACCAACGAGGTGCTGGAGAGGTGGCAGTTTGACATTGAGTGTGACAAGAGTGCCAAGGAGATCAGTGCTCCCAGGGAGAAATCCATCAAGTCCATCCAGGATGAGATTCGCTCAGTCATCAGACAGATCACCGCCACTGTCACCTTCCTACCCCTGCTGGAGACTTCCTGTGCCTTCGACCTCCTCGTCTACACCGACAAGGACCTGGAAGTGCCGGACAAGTGGGAGGAGTCAGGCCCCCAGATCATTGACCAGTCGGAGGAGGTTCGCCTGCGCTCCTTCACCACCTCCATCCACAAGGTCAACAGCATGGTGACCTACAAGAGGACCGACTCAGCCTAGAACCTGACCTCTAACCTACGACCCCCACTGTACATAGTTAACTCTTatggtctcctctcccctgctgcGTACTATAGGTATGTTGGAGATTGACTACAACGGATCTACAAATCATACTCGGTCGTCATTTAGGATGCCAGGTGATTTGTAGATGAGTCGCCGACTGCAATCTCAAACGCACACAATACGTATGAAAACAGAAATGTTTTCTTCTCCCTTCGCAACTCATGTCTCTCATTATCTTTCTttacgtacagtgccttcggaaagtattctggtcccttaactttttccacgttttgttacgttacagccgtattctaaaatgtattcaatgtttttttccccctcatcaatgtacacacaataccccataatgacaaagcaaaat

Function

NR:

description
mitotic spindle assembly checkpoint protein MAD2A-like

GO:

id name namespace
GO:0007094 mitotic spindle assembly checkpoint biological_process

KEGG:

id description
K02537 MAD2; mitotic spindle assembly checkpoint protein MAD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615349.2 True 1108 mRNA 0.48 5 28331806 28340457

Neighbor

gene id symbol gene type direction distance location
ank2b LOC103361685 coding upstream 171552 27995879 ~ 28163412 (+)
LOC110531867 LOC106577513 coding upstream 559083 27768636 ~ 27772723 (+)
trnaa-ugc-34 NA coding upstream 673250 27658481 ~ 27658556 (+)
LOC110531865 LOC106577518 coding upstream 684441 27633636 ~ 27647365 (+)
LOC110531863 LOC100695098 coding upstream 732209 27588954 ~ 27599597 (+)
LOC110531876 LOC106577496 coding downstream 107805 28448262 ~ 28548376 (+)
LOC118966204 NA coding downstream 156760 28497217 ~ 28497272 (+)
LOC110531878 LOC106577495 coding downstream 213312 28553769 ~ 28663634 (+)
LOC118966022 NA coding downstream 552591 28893048 ~ 28894058 (+)
LOC110531882 LOC106577492 coding downstream 695998 29036455 ~ 29039588 (+)
G789313 NA non-coding upstream 494 28331029 ~ 28331312 (+)
G789312 NA non-coding upstream 800 28330732 ~ 28331006 (+)
G789311 NA non-coding upstream 1492 28330019 ~ 28330314 (+)
G789310 NA non-coding upstream 1931 28329672 ~ 28329875 (+)
G789289 NA non-coding upstream 36765 28294428 ~ 28295041 (+)
G789294 NA non-coding downstream 1208 28341665 ~ 28342025 (+)
G789323 NA non-coding downstream 13510 28353967 ~ 28358180 (+)
G789339 NA non-coding downstream 40674 28381131 ~ 28383324 (+)
G789472 zcchc4 non-coding downstream 96131 28436588 ~ 28437550 (+)
G789481 NA non-coding downstream 106670 28447127 ~ 28447334 (+)
taf6l taf6l other upstream 844283 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 952142 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1918274 26413112 ~ 26413532 (+)
G786218 NA other upstream 2372939 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 2588897 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 999524 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 1942218 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 3255539 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 3412878 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3782225 32122682 ~ 32124851 (+)

Expression


Co-expression Network