LOC110531875 (zcchc4)


Basic Information

Item Value
gene id LOC110531875
gene name zcchc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28436541 ~ 28443621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615352.2
GCGTTGCCTTGAGTGACGTCGATTATTCGCGACTGACAGCATGGCAGGAGAGACATGCGTATAATATTTTGATCAAGCAAATATATTTGGTTACGCTACTTTTTACGAACATGCAACTAAAAGAATCAGATGAAGACGGCTTTGGAATAGAGATCGTCCTTcaacagggagacagaaaagcACCATCCTGTGTGCATGGTCCAACTTTGTTGTTTGAGAAGGTCtgcaaaggagaggagaaaggccgGAGGTTTTATGCCTGCTCAGCGTGCAGAGACCGAAAAGAATGCAATTTCTTTCAGTGGGAAGATGATAAGGTGTCTGAGGCCAGGCTTTTggccagagaggaggagaaccGGTCAAAGATGCCTCCTTTTACCCATCAGGAGTACTGCTCCAGGTTCAGAAAGTTCCTTGCCCTCCCCCTAGGAAGGAGGTTCTGCCAGGACTGTCAGCTCCTCCTCCTACCAGGGGAATGGGAAATCCACGCTTCTCACAAGATGTCGCAggctgatgacatcacagaggccCGGCTGAGCAGGCCCAGTCTAATGCTCAAACCGCTGGAGAACAAGAAGAGTAACGCCCAGTACCTGTTTGCCGACCGCAGCTGTCACTTCCTGTTGGATACTCTGGCCAAACTGGGCTACAGGAAGGTGCTCTGTGTCGGAACACCCAGACTCCATGAGCTGATCAAGCTAAGAAATCAGGAGGGCAAGAGTGACCCCATGAAGAGTCTGCTACTGGACATTGACTTCAGATATGCCCAGTTTTATGGCACGGATGAGTTCTGCCACTACAACATGTTCAATCATCACTTTTTTGGAGGCGAGGCGGCAAGTGGGGTCCTCCGAGCCTTCCTCGGCGAGGAAGATGGGGAGAAGGTGATCATGGTGTCCGACCCTCCGTTCGGGGGCCTGGTGAAGCCTCTGGCCCACAGTTTCTCTCAGATCGCAGAGACCTGGCGGGAACTGCAGACCTCCGAGGGCGGTGTTGTGGAGATGCCCATAGTGTGGATCTTCCCTTACTTCTTTGAGCCACGCATCCTTGAGTGTTTCCCCTCTTTCACCATGCTAGACTACCAGGTGGACTATGACAACCATCCCCTCTACAAACATGGGAAAACGGGTAGAAAACAGTCCCCAGTCCGCCTGTTCACCAACCTGGCACCACGAGACGTCGTCCTCCCTAGGGAGGAGGGTtacagATTCTGCAAAGTCTGTGCGAGATATGTGTGGTCTGGGAACAAGCATTGTACTAAATGCAACCTGTGCCCTTCAAAGGACGGGAGAGTGTGGAAGCATTGCTCAGAGTGTCAGAAGTGCGTGAAGCCATCCTGGCGCCACTGCCAATCCTGTGCCCGCTGTGCCCTCCCAGACCACCCCTGTGGGAATAGCCCAGGTCTGGAAGGCTGTTTCAACTGTGGCAGCCTGAAGCACAAGCGCAGAGCCTGCCCCCTCAAAGACAAACGGAGGACCGATAACAAatCCAAGGCCATGAATTCCAAGAGGACGTCTGGGGCCCAGCGCAGAGCCAACAAGTTGAAGAAGACGACAGAATAAGTCCCATGATCCCACTCTCATAATCAGACAGCaagggagatgtgtgtgtgtgtgtagcagatgTGAAGTTGCTATTGAGAGCTAGTCGTCTTTCATGTGTGGTTTCTGTACTGTAGAcaagtcttttttttttaaaaattgtacGTGATGTTTTTGCATAATAAAAGCATCGACTCTA

Function

symbol description
zcchc4 Predicted to enable rRNA (adenine-N6-)-methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleolus. Orthologous to human ZCCHC4 (zinc finger CCHC-type containing 4).

NR:

description
zinc finger CCHC domain-containing protein 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615352.2 True 1740 mRNA 0.51 12 28436541 28443621

Neighbor

gene id symbol gene type direction distance location
LOC110531873 LOC106577501 coding downstream 4535 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 125934 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 153081 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 539703 27894036 ~ 27896838 (-)
chi chi coding downstream 564170 27867348 ~ 27872371 (-)
LOC110531879 LOC106577493 coding upstream 223618 28667239 ~ 28993223 (-)
LOC110531880 NA coding upstream 520823 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 598954 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 626426 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 696729 29140350 ~ 29174588 (-)
G789436 NA non-coding downstream 53003 28382749 ~ 28383538 (-)
G789435 NA non-coding downstream 54111 28381856 ~ 28382430 (-)
G789433 NA non-coding downstream 55137 28380379 ~ 28381404 (-)
G789403 NA non-coding downstream 108369 28327859 ~ 28328172 (-)
G789397 NA non-coding downstream 121494 28314827 ~ 28315047 (-)
G789803 NA non-coding upstream 11311 28454932 ~ 28552172 (-)
G789856 NA non-coding upstream 73415 28517036 ~ 28517566 (-)
G789862 NA non-coding upstream 93262 28536883 ~ 28537548 (-)
G789945 NA non-coding upstream 219830 28663451 ~ 28666058 (-)
G789967 NA non-coding upstream 242444 28686065 ~ 28688698 (-)
G789228 LOC106577504 other downstream 289562 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 602277 27821574 ~ 27834414 (-)
G788495 NA other downstream 873016 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 968219 27463292 ~ 27468322 (-)
LOC110531854 LOC106577527 other downstream 1055252 27376312 ~ 27381485 (-)
G789863 LOC100194703 other upstream 85199 28528820 ~ 28652471 (-)
G790535 NA other upstream 605277 29048898 ~ 29049244 (-)
G790551 NA other upstream 625231 29068852 ~ 29069187 (-)

Expression


Co-expression Network