LOC110531880


Basic Information

Item Value
gene id LOC110531880
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28964444 ~ 28966956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474770.2
ccaaggttcctgccatccaggacctatatataataggcggtgtcagaggaaagcccagaaAATTGACTCCagtctccagtcacccaagtcatagactgttttctctgacATGTGGACTGACGATTTTAGAAAAATAGGCACGGTGGGCTTCTGGTTtatctccctctaaaaacagaaataaatcattctatataacaaactggctttattttcaaattagtaagaatgtctcaccacatgttcaagaatggctttttttcctttattcagattacaatcgctcactttcggttatttgaaacgAAATCATCCCCGAAATATCGTCATTATTTTAAAAAGCAATAGAAAGTCGGTTGGAATTTCAGTTTTATAAAATAAACTTGTATGTCAGCCCTGCATTAAAGGCCAAAAATTGGTTCAAGAAAATTGTGATCAATAAAAATATTTAccagtttaatttaaggaccaaaacaGTTACAGCCGTAGAGATTGCAAAaaagttgggaagagattttcgatgtagcaattccatggcacatggtttatgaattgacacgcaatTGAAAGTTTATTGTAACCTACTATATTATAAGTCCACGCCAGTTTCTTCCAGGGTTAGGACTGTAACCACCAAAGGACTTGAAAATGAGCCGGAACTGAGAGGATCACCGAAACTAAAGAGCGTACAACCATACCGACACCCATCCGTGGAGATCAGTGGACAAAGGGCTGGACAACAGGCTGCACTGAAAAAACACATGGTTCCCAAGAAAGCGGCCACTGTAATCAATATGGGGCTCAGGGCGGAACCATTCTGTTCATCTGACGAAGGTGCACATGGATCAGTCAAACTTTGAAGACCGAGATCGAGTCATTGAAGGCAGACCAGCAGAAAGAGCAACATTCTCAGAGGGCAGAGATACGGGCGACAGCTGATGCATAGGTCCAGATCCAGGCggtattggcggagagtcaggaTGGCGCGTTGAAGAGGGCGAGGAACGAGATGGAGTCACAATctgtgccaggcacaccagtgagctctggaactccacctcTGACAGGCAGTCACGTACGTGGCAGGTTCAATCGCTTTATTGTTGAATTATTTAAGgctcctttctcttctctgtgCGGGAGTTCTTTTAAGATGAACGTAGGCTAATGAAGGCAACAAGTTGCTTCTGACTGGAACACCCTAAGTCATCCACTTGTTATAATAGGATTTGAAACAATAGCCTACCTgtgtgtggtcaactatttcaccACTGTTtttgcgctgctctgagacaagcatggggactagTCTTGatataaatcaatgagattttttattttcactgaatctccgtttgggtattggttagcctacaattagggtgtggaaaaaTTAGGATTATTTGTTGCTGTCCGtcaatgattcccaaccaaatGTGAAGAGCTTGAGCAATGTTGACAAAAAACCATGAATATGCATGTATATGTTACTCTAAGAGGTGTGCACAATCTCACATTCAATGTCTATCTGCAGATTTTGTGAGTTTTTTGTGTGGCTTtaccatgtttactatgtactgtatgCTATGTGTACTTGttagactgcacagtagcctttTTTTTTACCATGGTAGATGCTGTGTTTTTGGTTGATGGCCAGTATTAAAAACTGTCATATGCATTTGTGCATTCAATCGCTTTATTGTTGAATTATTTAAGGctccttctcttctctgtgcTGGAGTTCTTTTAAGAATGAAGTAGGCTAATGAAggcaacaaattgttgcttactggaacACCCAAAGTCATCCACTTGTTATAAtcggatttgaagcaatagcatACCCgcgtgtggtcaactatttcagcacggTTTCATGCTGCTCTGAGACAAACAtagggactggtcttgataaatcaatgagattttctgTTTAGGTGACTTGCAGTCACCtagtagcctactcccgaccggcCACGTTGTACAGCGGCAACTTTTGAAAGCCAGTCTCCGCTTCCCCCGCACGTTAACAaaactttttctctctttcttattctCCTATTCTCTTCTCGCTAAATAAAAGTTAGTGTAGTTGCCCACATACTTCCCACCTTTCCCTCAGCTATACATCCACGGCTCTTCCTATAGCATCTGCCTCCATCTAATCCTTGTTCAGTGTTACTGAATCAGGCGCTGTCTGTCAGATGTAcaattttttgtttttcttgtcATAGAAACAGCATTATatcaatcaaattaattaagctacatttcttaaaatcaatcccatatactatgttc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106603801

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474770.2 True 2301 mRNA 0.41 3 28964444 28966956
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 520823 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 532438 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 653837 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 680984 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 1067606 27894036 ~ 27896838 (-)
LOC110531881 LOC106577491 coding upstream 75619 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 103091 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 173394 29140350 ~ 29174588 (-)
LOC110531887 LOC106577486 coding upstream 377425 29344381 ~ 29353599 (-)
LOC110532982 NA coding upstream 1392851 30359807 ~ 30360792 (-)
G790120 LOC106575828 non-coding downstream 24830 28935417 ~ 28939614 (-)
G790037 NA non-coding downstream 140974 28822733 ~ 28823470 (-)
G789968 NA non-coding downstream 273766 28689369 ~ 28690678 (-)
G789967 NA non-coding downstream 275746 28686065 ~ 28688698 (-)
G789945 NA non-coding downstream 298386 28663451 ~ 28666058 (-)
G790515 NA non-coding upstream 41022 29007978 ~ 29008204 (-)
G790525 NA non-coding upstream 59554 29026510 ~ 29026713 (-)
G790529 NA non-coding upstream 65490 29032446 ~ 29032737 (-)
G790509 LOC106577492 non-coding upstream 71264 29038220 ~ 29039574 (-)
G790536 NA non-coding upstream 83695 29050651 ~ 29050925 (-)
G789863 LOC100194703 other downstream 311973 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 817465 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 1130180 27821574 ~ 27834414 (-)
G788495 NA other downstream 1400919 27563162 ~ 27563525 (-)
G790535 NA other upstream 81942 29048898 ~ 29049244 (-)
G790551 NA other upstream 101896 29068852 ~ 29069187 (-)
G790598 NA other upstream 164418 29131374 ~ 29149017 (-)
G792267 NA other upstream 1348354 30315310 ~ 30357964 (-)

Expression

LOC110531880 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110531880 Expression in each Bioproject

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LOC110531880 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network