LOC110531882 (LOC106577492)


Basic Information

Item Value
gene id LOC110531882
gene name LOC106577492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29036455 ~ 29039588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615358.2
TTTCGGCTCTTTCTGATTTATGATTGGCTCGACCTCACGGTCTTGCCGTTGGGGCTACTCGGCTCCTTCAGCTTGTGTTATCACTGAAAATGGCGACCTGGTGTGTACGAGCTGTAAGACAGAGTTACTATGTTGCGGCATCGCCTTCATTACTAAGggCATCCCCGCGGCTCCTATGCACAGCAGCTCATCAGAAGAGTGGCCAGGGGTCGGAGGAGGACCAGAAGGCTGAGCAGAGCCCTGCAGAAAAGGCCTTGGTTGAGGAGAAGGGTCAGCTGGAGGAGCAGCTTAAGGAGGTCACGGACAAGTACACGCGCTCTCTGGCAGACATGGAGAACCTCAGGACGAGGAGTCAGAAGATGGTGGAAGACGCAAAGAAATATGGAATCCAAGGCTTCTGCAAAGACCTGCTGGAGGTGGCAGACATCTTGGAGAAGGCGACGGACAGTGTGCCCAAGGAGGAGGTGACCTCTCAGAAGAACCCCCACCTGAAGAACCTGTACGATGGCCTGGTGATGACAGAGACGCAGATCCAGAAGGTCTTCGCCAAGCACGGCCTGTTCAAGCTCAACCCCGACGGAGGGCAGAAGTTTGACCCCTATGAGCATGAGGCTCTATTTCACGCCCCCGTGGAGGGTAAAGAGCCTGGCACGGTCGCCATAGTAACCAAGGTGGGCTACAAGCTCCATGGGCGCACCCTCCGGCCGGCACTGGTGGGCGTGGCCAAAGccccttaaaaaaaaaagagattcaGTGTGACTGTGATGTTGTTGTTGCCTGGGCGACGGATCACCTTGGGTACAGCAGACTGGTCAGAGCCCCCTCCCCAACCATCTAACGTTGCCTCAGAGGCAGGAATCCAACTCGAACTGATATCGTTACCATGGACGACATCATCACACAGCCTGTTTTGACTGTGCATATCGACTCTCCACCCTTCTCCGGAAGTGTACACTTGCTCACTCCCCGTCATGAATtgaaaagcattggattggtataagcattggctggagggagTTTACACTGTCTTTAAATCCATGACAGGGAGTGTGCAAGTTTATACTTTGGGAGAAGGGTAGATAATTGGGACAGAGCCCATGTATATGCTGGGAGCAAATATGTTTTTACAGAAGTAACACTTGTAATGGCATGTAGAGCACAGAACGAGTTTCATGCAAGTTATTTCTTTTTTTGTCATCGGGGTCAGATTCCATTCATCTCTTTGTCCAGTCATTGTAATTATTGTGTTATGGATGGGAGAATGTAATGGATCTCATTTGATTATAGACAACTGTTGTCATCACTATCATAACTCTCATACAattgaatttaaaatgaattttTTTCCTGTAAGATTGTCTTTGGCACAACTTAACCCTGTAAATTGCTGTTTTAGTATTGCTTCCAGGAACActtttacatgtactgtatacttCATTTTCAGAAATGATGTCTAGACAAATTGATTATTGTTCAGCTACAATAGTACAGTAGGACACTGACTGGTTGTCAAAATGAGACAGAAATGCTCTGGTCAAATTGATTACAGATTCACCTGAAATAAGCAACATGATGTTGAACCTCTGACGTAATCATTCCGGACTTCACTGTACATCACTGCTTTGGCAGATGTTGACTTGGTGGTCTAGGATAGACGGCATAATACAGATTTTGAGTTTATCCAATAACTATTTGAACTGAACATTATAGTTGTCCTGTTGAGTGAGTGCCACAGCATTTAAATAAACAGATTTACTTTGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03687 GRPE; molecular chaperone GrpE

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615358.2 True 1762 mRNA 0.47 4 29036455 29039588

Neighbor

gene id symbol gene type direction distance location
LOC118966022 NA coding upstream 142397 28893048 ~ 28894058 (+)
LOC110531878 LOC106577495 coding upstream 372821 28553769 ~ 28663634 (+)
LOC110531876 LOC106577496 coding upstream 488079 28448262 ~ 28548376 (+)
LOC118966204 NA coding upstream 539183 28497217 ~ 28497272 (+)
LOC110531872 LOC106577502 coding upstream 695998 28331806 ~ 28340457 (+)
rbpjb LOC106577485 coding downstream 208539 29248127 ~ 29342203 (+)
tbc1d19 tbc1d19 coding downstream 314528 29354116 ~ 29381669 (+)
stim2b LOC106577483 coding downstream 343504 29383092 ~ 29473789 (+)
LOC110531891 NA coding downstream 1243049 30282637 ~ 30288163 (+)
LOC110531892 LOC106577482 coding downstream 1334783 30374371 ~ 30598347 (+)
G790181 NA non-coding upstream 3722 29032504 ~ 29032733 (+)
G790177 NA non-coding upstream 9495 29026711 ~ 29026960 (+)
G790176 NA non-coding upstream 10833 29025398 ~ 29025622 (+)
G790172 NA non-coding upstream 16295 29015166 ~ 29020160 (+)
G790159 NA non-coding upstream 37676 28998579 ~ 28998779 (+)
G790185 LOC106577491 non-coding downstream 5248 29044836 ~ 29045124 (+)
G790189 NA non-coding downstream 8081 29047669 ~ 29047876 (+)
G790190 NA non-coding downstream 8331 29047919 ~ 29048123 (+)
G790191 NA non-coding downstream 9095 29048683 ~ 29048906 (+)
G790196 NA non-coding downstream 17926 29057514 ~ 29057801 (+)
taf6l taf6l other upstream 1548932 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 1656791 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 2622923 26413112 ~ 26413532 (+)
G786218 NA other upstream 3077588 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 3293546 25712997 ~ 25742909 (+)
G793757 LOC107579696 other downstream 2556408 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 2713747 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3083094 32122682 ~ 32124851 (+)

Expression


Co-expression Network