LOC110531881 (LOC106577491)


Basic Information

Item Value
gene id LOC110531881
gene name LOC106577491
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29042575 ~ 29045196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615356.2
TCAATATTAATGAGACGCAGTTGTGAGACTCCAGTACGCATGCCCTCCCCGCGCGACACTGCTGCTTCCAACAACAAGCAAGAAGCCAGCAACATGGCCGACCTAGGAAAGAAGTACTGCGTAAACTGCCTTGCAGACGTTACGAATCTGAGACTTCGCTGTACTGACTGCCCAGATATCGAACTGTGTCCGGAATGCTTCTCCGCGGGTGCAGAAATCGGTAATCATCGGCGATGGCACGGTTATCAGCAAGTCGACGGCGGGCGCTTCACACTCTGGGGTCCCGAAGCGGAGGGAGGATGGACTAGCAGGGAAGAGCAGTCGCTACTAGATGCGATCGAGCAATATGGCTTTGGAAACTGGGAGGACATGGCCACTCACGTGGGGGCGTCTCGGACCCCCCAGGAAGTCATGGACCACTACGTCAGAATGTACATTCACGGCAACCTGGGCAAGGCCTGCGTCCCCGAAAGTATCCCCAACCGGGTAACAGACCACACCTGCCCCAGCGGTGCCCCCCTGTCCCCCAGCCTCACCACCCCCCTGCCTCCGCTGGACGTGACCCTGGGCGAGCAGCAGCAGCTGGGCTATATGCCCCTTCGCGACGACTATGAAATCGAGTATGACCAGGAGGCAGAGAAGCTCATCAGCGGCCTGTCAGTCAACTACGACGATGAAGACGTGGAGATTGAAATGAAGCGGGCGCACGTGGACATGTACGTGCGCAAGCTGCGGGAGCGTCAGCGCCGCAAGAATGTGGCCCGCGACTACAACCTGGTGCCCGTCTTCCTTGGGCGAGATAAGAAGGACAAGGAGAAGCCAGGCACGCTGGGAGTTGTAGGTGGCGGGGGTAGTGTTGGCGCCGTCGGAGTGGGAGGAGGAGTAGTGGGGACCCTTCTGATGCTGACCAATCCCATTGTGACGCCGGGAGCTGCAGCCGTTCCTACAGTGCCAAAGCGTAAGATCACcaaggaggagaaggagcagcGGGTCAAGTTACGGGGAATGTGCCAGTTCATGGCTCTGCGGGAGTTTGAGGACTTCTTTGACAACATGCACAAGGAGCGCGTGCTGCGCGTCAAGGTACGAGAGCTGCAACGATACCGCCGCAACGGCATCGCGCGACTGGACGAGTCGGCCGAGTACGAGTCGGCGCGGCACAAACGGGAGAAACGCAAGGAGAACAAGAGTGTGGCTACCTCCAAAACAGGCCGAGGCGGCGGGCTCGGcactgggggaggagggggagggcttGGAGGAGGGGCGGGAGGTGGAGGAGTGGGCGGTGGCGCCATCAAAGAGGAGGGCAAGGAAGGCGAGTTTGCGGCCATTGAGAACCTGTCCGGCTTTGAACTGCTGTCGGACCGGGAGAAGGTGCTGTGTAACACACTCAACCTCAGCCCCACGCGCTACCTGACCGTCAAGACCATCATCATCAAGGACCACCTTCAGAAGCGCCAGGGCATCACCTCCAAGAGCCGCCTGCCAGGCTACCTGGACAAGGTGCTCAAGAAACGCATCCTCAGCTTCCTCACAGAGAGCGGCTGGATATCCCGAGACATGTCCTAACAGTCCATCGGGTTTGTAGGAACTGGACCTGGGAAGTGTCCTAACAATGTGTGTATGGAGTTTGTGGGGACTGAGGATTACAGAAGGATCATGACTCTGTTCTCCGTTGGATTGTTGCGTCTCCGTGTGTCTTGTTAGAAACAATGTGAGATTTGCACTCGTAAGCTCCACATAGACCAAACTATTGGGTTTTACCACCTTTTGTCTCGTTTTGTCCAACGTCATCGACCACAGGACTGTTTGTGAATATGTACATTGCAAAGAATAAGGATTTCcactttcttaaaaaaaaaaagtttggatACCATTTACAGGGGAGGGATGAACAGATATATATTTTTGCATTTGAATCCATATGAATGATAATGTATTCGTATGGGTAGATGATACAGGGTCTTTGTATTGAAACTCCAGTGAAGGATCGCCTAATGCTGCTGGGCAAACCAGACAACACTGTCTTCAAAGCTGTTCTCAAAGTATAAATTGTTACGTATAGTTTGC
>TU900103
GTAGGTGGCGGGGGTAGTGTTGGCGCCGTCGGAGTGGGAGGAGGAGTAGTGGGGACCCTTCTGATGCTGACCAATCCCATTGTGACGCCGGGAGCTGCAGCCGTTCCTACAGTGCCAAAGCGTAAGATCACcaaggaggagaaggagcagcGGGTCAAGTTACGGGGAATGTGCCAGTTCATGGCTCTGCGGGAGTTTGAGGACTTCTTTGACAACATGCACAAGGAGCGCGTGCTGCGCGTCAAGGTACGAGAGCTGCAACGATACCGCCGCAACGGCATCGCGCGACTGGACGAGTCGGCCGAGTACGAGTCGGCGCGGCACAAACGGGAGAAACGCAAGGAGAACAAGAGTGTGGCTACCTCCAAAACA

Function

NR:

description
transcriptional adapter 2-beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615356.2 False 2070 mRNA 0.55 2 29042575 29045196
TU900103 True 372 TUCP 0.59 1 29043436 29043807

Neighbor

gene id symbol gene type direction distance location
LOC110531879 LOC106577493 coding downstream 49352 28667239 ~ 28993223 (-)
LOC110531880 NA coding downstream 75619 28964444 ~ 28966956 (-)
LOC110531875 zcchc4 coding downstream 598954 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 610569 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 731968 28294175 ~ 28310607 (-)
LOC110531883 LOC106577489 coding upstream 24851 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 95154 29140350 ~ 29174588 (-)
LOC110531887 LOC106577486 coding upstream 299185 29344381 ~ 29353599 (-)
LOC110532982 NA coding upstream 1314611 30359807 ~ 30360792 (-)
LOC118965933 NA coding upstream 1787530 30832726 ~ 30834388 (-)
G790509 LOC106577492 non-coding downstream 3001 29038220 ~ 29039574 (-)
G790529 NA non-coding downstream 9838 29032446 ~ 29032737 (-)
G790525 NA non-coding downstream 15862 29026510 ~ 29026713 (-)
G790515 NA non-coding downstream 34371 29007978 ~ 29008204 (-)
G790120 LOC106575828 non-coding downstream 102961 28935417 ~ 28939614 (-)
G790536 NA non-coding upstream 5455 29050651 ~ 29050925 (-)
G790538 NA non-coding upstream 9518 29054714 ~ 29054948 (-)
G790539 NA non-coding upstream 9854 29055050 ~ 29055276 (-)
G790541 NA non-coding upstream 12152 29057348 ~ 29057581 (-)
G790542 NA non-coding upstream 12441 29057637 ~ 29057916 (-)
G789945 NA other downstream 376517 28663451 ~ 28666058 (-)
G789863 LOC100194703 other downstream 390104 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 895596 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 1208311 27821574 ~ 27834414 (-)
G788495 NA other downstream 1479050 27563162 ~ 27563525 (-)
G790535 NA other upstream 3702 29048898 ~ 29049244 (-)
G790551 NA other upstream 23656 29068852 ~ 29069187 (-)
G790598 NA other upstream 86178 29131374 ~ 29149017 (-)
G792267 NA other upstream 1270114 30315310 ~ 30357964 (-)
G793472 NA other upstream 2358286 31403482 ~ 31403869 (-)

Expression


Co-expression Network