LOC110531918 (LOC106577443)


Basic Information

Item Value
gene id LOC110531918
gene name LOC106577443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32002866 ~ 32027214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615397.2
GCCTTTCTTAGACTAACATCAAACATTCAAATATCCGTGCTTTGCCAGTGACATGGGACATAGTAGTCACGGTGGACTTTTCATTCGCAGCGACAGACGGCAACAAACACGCCAAGGAAAGGaaatatcacagtcaaatatgaACCGAATATGCTACCTTCACTTTTCGGATGGTTTGAACTTTTATCCGTGAATTGTTGATACTACAGCGAAAGGGTGCCCACACCTTCAGTTAGCGCGACAGCTTCACTGTCCAGTTGGCCAGATGGGATGCCAATGCTGTAAGATGATTAAAAGAAATAGGGACCCGGCAGAGGGCTCTCTCTACCAGCCCCACCACCTCCCAGCAGACGGCGGAGACCAGTCCAACAACAAGCAGAAGCAGGACTTTCACAACCTGGGCTTCAGCAACAGCAACAAGTACAACGATGGAGAAGATGGAGGACGAGGCCTTAAGCTGGAGATCGACAACAACCAGATCAACAGGCTTCACGCCGTGCCCGCCAACCcagagagggggcaggggagaGGGCAGGGAGTCAAGCCTTGGGCAGGggaggttggtggtggtggtaggggtctGTATATCCTCCATCCAGAGGGCCAGGTTCCAAGACGAGATCCATCTAAGGGCCCCAGCCAAGTTCCAATCTACCCTAACACACTCTCCCTGGATCATAGTCACCATCTGACACATTTGGGTGACAATGACCCCCACAAGATTAGGATGTTCCGAAATAGCTCGGACCCCTCCTGGCCCGGTGTGGGGTGCTACACCTCGTTGACGGATGAGCTGGATGAGGGGGTGGGGGGCACAACTGAGTACCTGTGTGACACAGGGGATGAGGAGAGCGTCCTGTCTGCGGATATTCCAACTAGTACAACTAGCCTGTCCTCGGCAGACACGAAGGATGATAGGAGCGCGCCGGACGCCACTACCGTAGAGAGCGGGATCGGGATCTCGGTGACGAAAAGCGAAGATGAGGGACGGGAAGAAGATGACGTGTATCACATCACAGACTCTATGGTGGCGGAAGCTCTAGCGGCTCTAGATGCGGCAACCGCCGGGGAGGACTATGAGGACTAACTCTTTAAAAACTCTTAAATATTTTCTACAAGGCCTCTTACTATTCCAAAAGCACAATCTAACTTCGAAATCTATTCAGCTTCAATATCTGCTGCTTTTTTTACTAAAATATGGATTTATTTTTTAACATACTGTAGATCATGCATATTTGTCTTGTGAGTCACATgggcatacagtaccagtcaaaagtttatttatttttactagtttctacattgtagaataatagtgtagaca

Function

NR:

description
uncharacterized protein LOC110531918

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615397.2 True 1324 mRNA 0.49 3 32002866 32027214

Neighbor

gene id symbol gene type direction distance location
LOC110531917 LOC106608522 coding upstream 10470 31900060 ~ 31992396 (+)
LOC110531915 LOC106595846 coding upstream 245364 31753182 ~ 31757502 (+)
LOC110531892 LOC106577482 coding upstream 1404519 30374371 ~ 30598347 (+)
LOC110531891 NA coding upstream 1716627 30282637 ~ 30288163 (+)
stim2b LOC106577483 coding upstream 2529077 29383092 ~ 29473789 (+)
LOC118965935 NA coding downstream 50404 32077618 ~ 32078723 (+)
LOC110531922 LOC106577451 coding downstream 84578 32111792 ~ 32114299 (+)
zgc:112271 bola2 coding downstream 95545 32122682 ~ 32124851 (+)
rpl34 rpl34 coding downstream 467276 32494490 ~ 32498602 (+)
ostc ostc coding downstream 492864 32520078 ~ 32539651 (+)
G794165 NA non-coding upstream 79906 31922734 ~ 31922960 (+)
G794157 NA non-coding upstream 90066 31912592 ~ 31912800 (+)
G794142 NA non-coding upstream 104807 31897844 ~ 31898059 (+)
G794141 NA non-coding upstream 105255 31897388 ~ 31897611 (+)
G794130 NA non-coding upstream 111672 31890994 ~ 31891194 (+)
G794318 NA non-coding downstream 13156 32040370 ~ 32040643 (+)
G794377 NA non-coding downstream 77314 32104528 ~ 32127935 (+)
G794415 NA non-coding downstream 136342 32163556 ~ 32163962 (+)
G794417 NA non-coding downstream 140166 32167380 ~ 32167653 (+)
G794418 NA non-coding downstream 140490 32167704 ~ 32167973 (+)
G793757 LOC107579696 other upstream 405948 31595996 ~ 31596918 (+)
rbpjb LOC106577485 other upstream 2660663 29248127 ~ 29342203 (+)
taf6l taf6l other upstream 4515343 27480038 ~ 27487523 (+)
G794892 NA other downstream 474633 32501847 ~ 32502355 (+)
G794893 NA other downstream 475182 32502396 ~ 32502749 (+)
G794886 LOC106577459 other downstream 556392 32583606 ~ 32587388 (+)
G796495 LOC106613263 other downstream 2094208 34121422 ~ 34121740 (+)

Expression


Co-expression Network