LOC110531922 (LOC106577451)


Basic Information

Item Value
gene id LOC110531922
gene name LOC106577451
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32111792 ~ 32114299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615407.2
AGAGGGCAGACATTATGGAAAATAAAACTTTACTGGGCGTTTACTCGTCTCATTTTATGTGCTACGTTCAAATACAAAACGTAAGCTGTTTATTAAATAGGCTGTAGGATATCTTTGCAGCAACTCTGTGGAAATGGAAGTTGTTGCTGAAACTGGGGTTATTGCGGACTCATCCGCCAGTTCACAACCTGCCGGCGACGTGAATGAAGAGAGAGGTTCCCTCTTCGATGTTACATTTCTGGACCACGACTTTCCAGGTGCTGAGACTGAGACCCCGACCCGCAAGACCTACCAGGAGTTCCAGCCCAAAGCACTGGGGGTCTCTCAGATCACTTTGGGTGTGTTTGTGCTCAACTCAGTTTATGTCAGTGTAGCCAACCGATTGGAtcagagaaatgaagaagtaaccAGGGCGATAGGCTCCCTGTCTGCGATAGTGGCGGGAAGTGTGGCCATAGCAGCACAGAGTCTTCATGTTCCCACACTGAAGGCGTGTCTGGGGACACAGCTGGCTACCTGCCTTATGGCCATGTTCAACGTGGTCGTCGTAGGAGGAAAGCTGTCTGACACCCACTTAGTGCCAGACTGCTGGCTTTTCACTGattacaacaacacacatcatcacatcacctGCGACAAGCTGATGAATTCAGTGTATCCATTCTATGTCGAGTGGTTCCTCGTGCACGCAACTCTCCTCGGCATTTCTGTCACCCTGACTATCTACAGCTGCAAGCTGCTCCGCTTCTGCTCCCCTGCAGCACCCAGCATGCCTGTGGTCACTGCATATACTAGCCCTGCTCAGTGACAAGAGATGAAGTACATAGAAAGGAACCTAAAGCCATCATGAAGAGACACTGATGGGTCTATCTAGCCATGCACTTTTTTCAAATCTATTTGTCACTATGTTTTCTGTCTTGCACAAACACTTGATGTTGATATGTTATATGGTTGCCTTTTTTATGAAATAGTTTGGTTATTTTGTTGTGTGTTCTGATGATAGAGTATGTCTGTTTAGATCTATATGGTCTCAGGTGCTATTTTAGTGATGGGTTTAAAGAGTGAAACTTTGTGGGTACATCATATTGAAATAAACACTTCCTCAGGGTCAAAAA

Function

NR:

description
uncharacterized protein LOC110531922

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615407.2 True 1115 mRNA 0.46 7 32111792 32114299

Neighbor

gene id symbol gene type direction distance location
LOC118965935 NA coding upstream 33069 32077618 ~ 32078723 (+)
LOC110531918 LOC106577443 coding upstream 84578 32002866 ~ 32027214 (+)
LOC110531917 LOC106608522 coding upstream 119396 31900060 ~ 31992396 (+)
LOC110531915 LOC106595846 coding upstream 354290 31753182 ~ 31757502 (+)
LOC110531892 LOC106577482 coding upstream 1513445 30374371 ~ 30598347 (+)
zgc:112271 bola2 coding downstream 8460 32122682 ~ 32124851 (+)
rpl34 rpl34 coding downstream 380191 32494490 ~ 32498602 (+)
ostc ostc coding downstream 405779 32520078 ~ 32539651 (+)
trnag-ucc-3 NA coding downstream 920646 33032239 ~ 33061120 (+)
trnag-ucc-4 NA coding downstream 921152 33035451 ~ 33035522 (+)
G794318 NA non-coding upstream 71149 32040370 ~ 32040643 (+)
G794165 NA non-coding upstream 188832 31922734 ~ 31922960 (+)
G794157 NA non-coding upstream 198992 31912592 ~ 31912800 (+)
G794142 NA non-coding upstream 213733 31897844 ~ 31898059 (+)
G794141 NA non-coding upstream 214181 31897388 ~ 31897611 (+)
G794415 NA non-coding downstream 49257 32163556 ~ 32163962 (+)
G794417 NA non-coding downstream 53081 32167380 ~ 32167653 (+)
G794418 NA non-coding downstream 53405 32167704 ~ 32167973 (+)
G794419 NA non-coding downstream 53683 32167982 ~ 32168294 (+)
G794422 NA non-coding downstream 57544 32171843 ~ 32172042 (+)
G793757 LOC107579696 other upstream 514874 31595996 ~ 31596918 (+)
LOC110531891 NA other upstream 1823629 30282637 ~ 30288163 (+)
rbpjb LOC106577485 other upstream 2769589 29248127 ~ 29342203 (+)
taf6l taf6l other upstream 4624269 27480038 ~ 27487523 (+)
G794892 NA other downstream 387548 32501847 ~ 32502355 (+)
G794893 NA other downstream 388097 32502396 ~ 32502749 (+)
G794886 LOC106577459 other downstream 469307 32583606 ~ 32587388 (+)
G796495 LOC106613263 other downstream 2007123 34121422 ~ 34121740 (+)

Expression


Co-expression Network