slx1b (LOC106577450)


Basic Information

Item Value
gene id slx1b
gene name LOC106577450
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32114304 ~ 32122169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615406.2
TGTTATTCAATGAATGTGCCAATGAGCATCTGCGTTGCTAAGGGCTAacatagaagtcattcctatttctgacgcagatcgcgctgcaagtcctgcctctcccatctcctcattggtttacgCTTTgatacaccagaagtacattaatTTCCACTGGAACTCTGCGcttgccttgcagcattgtgttgcagaggcagtttcagtgcgttctgtgtggtgcatattGGATTTTTCGAACGTATGCATCAAATTGTATGCATTGAATTGACAGAAAGTAGCAAAATGTGAATGTTGAATTTTTATTGCACACATATCAAGGAAAAAAAAAAGTGGGATAACATAATTAAAACAGTTTGGCTGTagaatttctttatttttttgtataaatGTATTTGCCAAGTATATTATTTATTCgatgacatccacaaattaattgTGAGAGAGAGCCTATCATATAATTTCCCTCCAAAATGCAGTTTTGGAGCGAAATGCAATAATAAATAGTCAAGATAGCAGAGTAGGATCTTTCAACAATGAGACGAACATTGAGGAAGGTGGTCTTGATCGTGCTGTTGGACCGGGACCAGCCCCGCTGAAAGTGCCGTTCTGTGTGGGTCCAGAGATGGTTAAAGTCCCGAAAGCAAGTAGGGGAGTACCACCGTCTCATTCAAGAGCTTCGACTGTTTGGAAGAGGAATTCCGAAGTTACTTTCGTCTGGACCGAAGCCTGTTCGATCACCTGCTCCAGATGGTCGGAGCCAGGATCGCTCGAATGGATACCAACTACCGGGAGTCCATCAGCCCAGATGAACGCCTGGCAATTTGTCTCCGGTAAGCTAAATTCTAGTACATTTTTAAAGCCTTTGATAGCATAATTGATTGATATTTGATATATTGCTTTTATGTGCAAGCTAAAGGGCTCTCTAGCTAATAGTCCCTATTTGACATCAGATGTATTTTTACAGAATGTCCATTAGGACTATAACTTTTCCCAAAGTTGGTTTATAATCCTTTTTTAATTATGCAATGTTACCAAATGAAAAGAAAGTTGGGGTGCCTTCTGCTCTGATGAAGGTAGGCTAGTCTTCTCCAGGACCCATTGGTTCAAGACAGTTAGTCATTCATTACGTTCTTATTGGACTCGCATTCACTCTTAAAGAAAAGGGTTCTGAAAGTGTCCTTCTGCTTTCCCCATaggttaacactttttggttcctggTATAAAAAGGTTATAcatggaatcaaaaagggttctcctatggggacacccGGAGAACCCTTTTAAGTAGATGGTACCATTCTTTCTAAGAGTAGAGTTGGCCTGGGCTACAGTTTATTGATATAGTCATAGACTGAATTGTACTGTTTCAAGGCATTGTTAATGATGGTTGATGAGTATTACAATATAATTAGTAGAGCATAATATACAGTAATGAGTAACAGTACTCAGTATGAGTAGATAAAATATGTGGGTGGAATTCAAGTTACACACACTGTTGATAATTATTTtgaattatattttagattcttggCGACGGGACTCCTACAGGACCATCAGATTCAGCTTCCGAGTTGGACGGTCCACGGTGGCAGGCATTGTCCCCTCTGTGGCACAAGCCATTTGGGACTGTCTGGTTGGTGAATACATGTCTCTCCCCAAGGAGGAAGATTTGAGGGGTATCGCTGCCGAGTTCCTGGAGAGGTGCTATTTCCCCAACTGTCTTGAGTCCATTGCCGGGAAACATGTGGTAATCCAGGCTCCACCGTGCTCAGGTTCACAATTCTACAACTGCAAGGGTACATATTCAGTTGTACTCTTGGCTGTAGTAGATGCCATCTGCGGTTTCCGTGTTGTCAATGTTGGTGCTTACGGCAAGGGAAGTGATGGCGGGACCCTCCGGGACTCTGCCTTCGGCCAGGCATTTCAGGATGGCACCCTGGAGATTCCACCACCTGCATCACTCCCTGGGGCAGAAGACCTGGGACCTGTTCCCCACGTCTTCGTCAGCGACGAAGCCTTCCCTTTGGACACCAGCTGCCATTGCCAAAGCCTGTAAGGATCTTTAACATACGACTGTCCAGGGCAAGGTTAGTTGTTGAATGTGCCTTTGTGATTCTGGCAGCCCGGTGGAGAATGTATCGGAGAGTGCTTGGTCTCAGTCCCTCAAATGTTGATGCCTGTGTGAAGGCCACATGTGTTCTCCACAACTACCTGCGGAGGTCTTTTCCAGGAGCCGCTCTGGATGAAGATGTGCACGCCAAATGGTTACCTACCTGTCACCAGGGCAGGTGCCAACAACACCCCCAGACAGGCACTCCAGTTTGAATGGGCATGGCAGAATCCCCACTCCTCCCGACGCCTGTCCCACGTCACCCGGCGCTCAAAGAAGGAATCCAGCCTGCAGTTCCACTGGCGTGTGGTGTCCAACATGTTGCGGGTGATGCCGTGGAGCCGCCTGCCCCTCACCACCCGCTGGCTCAAGCAGGAGTACAGGATGGACTTTGAGCCTGGCCTTCAGCCGCCGCTGCACATCCCTTTGGCCTTCGGCAGCATCAGGGCCAGGAAACAGAAACCGAAGGATGTGGAAGAGGAACAAGAGGAGAAGGGTGCAGATATATGCCTCCTTTGTCAGGGGACTGTTAAGTCTGCAGATAAGATGACCTGCTTCCATCCCTTATGTCACATGACCAGCCACCTGATTTGCTTAGCCAAACACTTTCTGACGGGTGAGGCCGCACATCTCCTTCCTGTGGAGGGGGAGTGTCCCGGTTGCCGTCACTCAGTACTGTGGGGGAGTCTGATTCGCCACAAGAATGGCTGTTACGGAGACCTGGAGAAGAACACAACCTCATCCCAAAACCATTGGACAGATGAACTGCAGTTCTAATCTGAATGTGATCAGTCAGAACCTTCCTAATATGAACTTTGAACTGCTACCGAGTCACCATGACTGTACAGAGAAAAGACTGCGAAGATAGGATGAAATACAGTAGATCAATGACTAGCAAGTTACTCTTTAATGGACTTCCTGCAACAGCAAAGGGTTGATCAATTGATTGATCCATCAGAAGATTTAATGTATGCACAAAAATCATGCTGATCTGGTgtgaaaaatgtttttaatgcagCATCTGAACCCTTTTTATATTGTATCTGTTAACTAAAAAACAATCATGAATAACGCagttttaaatgtgtgtgtaaaACCTATATGTATTGTATGTACAACCAATAAAACATAGATGCTTTGTTTTGGAGCCAAGGAAAGCA
>XM_021615402.2
GTAGTATCGGTTAGGGGGAAATTAATGTGCATATGTTTTTCATAATGCTGGAGTAAAACTATATATTACCATACTACTCACATCAGGTTTAAGTTCCTTTTGTAACCAGGTAGAAGTcagactagctagctaactgttagcTGACACTAACTTGCTTATTATTGACACATAACTCTACATCTGGATTTTATTTTGGTGACTTGATCATTTCATGTACATCTACTATGGTCTTGGAGGTAGAGAGTTTATTCGGGGTGTACATGCTGTATTGCACCAATCCCAAATTCAAGGGTCGTATCTACATTGGTTTCACTGTGAATCCAGAGCGTCGTATAGGACAGCACAACGCCGGGCGACACCGAGGTGGAGCCAAGAGGACCAGTGGAAGGGGACCTTGGtaactaacagaactaatTTTGAATGGGCATGGCAGAATCCCCACTCCTCCCGACGCCTGTCCCACGTCACCCGGCGCTCAAAGAAGGAATCCAGCCTGCAGTTCCACTGGCGTGTGGTGTCCAACATGTTGCGGGTGATGCCGTGGAGCCGCCTGCCCCTCACCACCCGCTGGCTCAAGCAGGAGTACAGGATGGACTTTGAGCCTGGCCTTCAGCCGCCGCTGCACATCCCTTTGGCCTTCGGCAGCATCAGGGCCAGGAAACAGAAACCGAAGGATGTGGAAGAGGAACAAGAGGAGAAGGGTGCAGATATATGCCTCCTTTGTCAGGGGACTGTTAAGTCTGCAGATAAGATGACCTGCTTCCATCCCTTATGTCACATGACCAGCCACCTGATTTGCTTAGCCAAACACTTTCTGACGGGTGAGGCCGCACATCTCCTTCCTGTGGAGGGGGAGTGTCCCGGTTGCCGTCACTCAGTACTGTGGGGGAGTCTGATTCGCCACAAGAATGGCTGTTACGGAGACCTGGAGAAGAACACAACCTCATCCCAAAACCATTGGACAGATGAACTGCAGTTCTAATCTGAATGTGATCAGTCAGAACCTTCCTAATATGAACTTTGAACTGCTACCGAGTCACCATGACTGTACAGAGAAAAGACTGCGAAGATAGGATGAAATACAGTAGATCAATGACTAGCAAGTTACTCTTTAATGGACTTCCTGCAACAGCAAAGGGTTGATCAATTGATTGATCCATCAGAAGATTTAATGTATGCACAAAAATCATGCTGATCTGGTgtgaaaaatgtttttaatgcagCATCTGAACCCTTTTTATATTGTATCTGTTAACTAAAAAACAATCATGAATAACGCagttttaaatgtgtgtgtaaaACCTATATGTATTGTATGTACAACCAATAAAACATAGATGCTTTGTTTTGGAGCCAAGGAAAGCA
>XM_021615405.2
TTTGTTTACCGTACATTTTTCTCACGTAGTATCGGTTAGGGGGAAATTAATGTGCATATGTTTTTCATAATGCTGGAGTAAAACTATATATTACCATACTACTCACATCAGGTTTAAGTTCCTTTTGTAACCAGGTAGAAGTcagactagctagctaactgttagcTGACACTAACTTGCTTATTATTGACACATAACTCTACATCTGGATTTTATTTTGGTGACTTGATCATTTCATGTACATCTACTATGGTCTTGGAGGTAGAGAGTTTATTCGGGGTGTACATGCTGTATTGCACCAATCCCAAATTCAAGGGTCGTATCTACATTGGTTTCACTGTGAATCCAGAGCGTCGTATAGGACAGCACAACGCCGGGCGACACCGAGGTGGAGCCAAGAGGACCAGTGGAAGGGGACCTTGTTTGAATGGGCATGGCAGAATCCCCACTCCTCCCGACGCCTGTCCCACGTCACCCGGCGCTCAAAGAAGGAATCCAGCCTGCAGTTCCACTGGCGTGTGGTGTCCAACATGTTGCGGGTGATGCCGTGGAGCCGCCTGCCCCTCACCACCCGCTGGCTCAAGCAGGAGTACAGGATGGACTTTGAGCCTGGCCTTCAGCCGCCGCTGCACATCCCTTTGGCCTTCGGCAGCATCAGGGCCAGGAAACAGAAACCGAAGGATGTGGAAGAGGAACAAGAGGAGAAGGGTGCAGATATATGCCTCCTTTGTCAGGGGACTGTTAAGTCTGCAGATAAGATGACCTGCTTCCATCCCTTATGTCACATGACCAGCCACCTGATTTGCTTAGCCAAACACTTTCTGACGGGTGAGGCCGCACATCTCCTTCCTGTGGAGGGGGAGTGTCCCGGTTGCCGTCACTCAGTACTGTGGGGGAGTCTGATTCGCCACAAGAATGGCTGTTACGGAGACCTGGAGAAGAACACAACCTCATCCCAAAACCATTGGACAGATGAACTGCAGTTCTAATCTGAATGTGATCAGTCAGAACCTTCCTAATATGAACTTTGAACTGCTACCGAGTCACCATGACTGTACAGAGAAAAGACTGCGAAGATAGGATGAAATACAGTAGATCAATGACTAGCAAGTTACTCTTTAATGGACTTCCTGCAACAGCAAAGGGTTGATCAATTGATTGATCCATCAGAAGATTTAATGTATGCACAAAAATCATGCTGATCTGGTgtgaaaaatgtttttaatgcagCATCTGAACCCTTTTTATATTGTATCTGTTAACTAAAAAACAATCATGAATAACGCagttttaaatgtgtgtgtaaaACCTATATGTATTGTATGTACAACCAATAAAACATAGATGCTTTGTTTTGGAGCCAAGGAAAGCA
>XM_021615401.2
TCTGTAACAGCATGAACATTAAACGTTATTAGTCAAATAAGCCTCAAGTAATTCGACACTATCATAGATCTAAATACAAAATGGGTTTACCTCACATGGACAGATTTTGGGTGGAGTAAATGCTCTCGCTTCGCTTCTTCCTCTTTTGTTTACCGTACATTTTTCTCACGTAGTATCGGTTAGGGGGAAATTAATGTGCATATGTTTTTCATAATGCTGGAGTAAAACTATATATTACCATACTACTCACATCAGGTTTAAGTTCCTTTTGTAACCAGGTAGAAGTcagactagctagctaactgttagcTGACACTAACTTGCTTATTATTGACACATAACTCTACATCTGGATTTTATTTTGGTGACTTGATCATTTCATGTACATCTACTATGGTCTTGGAGGTAGAGAGTTTATTCGGGGTGTACATGCTGTATTGCACCAATCCCAAATTCAAGGGTCGTATCTACATTGGTTTCACTGTGAATCCAGAGCGTCGTATAGGACAGCACAACGCCGGGCGACACCGAGGTGGAGCCAAGAGGACCAGTGGAAGGGGACCTTGGGAGATGGTTCTCATCATTCATGGCTTCCCCTCTGACATAGCTGCTTTGAGGTTTGAATGGGCATGGCAGAATCCCCACTCCTCCCGACGCCTGTCCCACGTCACCCGGCGCTCAAAGAAGGAATCCAGCCTGCAGTTCCACTGGCGTGTGGTGTCCAACATGTTGCGGGTGATGCCGTGGAGCCGCCTGCCCCTCACCACCCGCTGGCTCAAGCAGGAGTACAGGATGGACTTTGAGCCTGGCCTTCAGCCGCCGCTGCACATCCCTTTGGCCTTCGGCAGCATCAGGGCCAGGAAACAGAAACCGAAGGATGTGGAAGAGGAACAAGAGGAGAAGGGTGCAGATATATGCCTCCTTTGTCAGGGGACTGTTAAGTCTGCAGATAAGATGACCTGCTTCCATCCCTTATGTCACATGACCAGCCACCTGATTTGCTTAGCCAAACACTTTCTGACGGGTGAGGCCGCACATCTCCTTCCTGTGGAGGGGGAGTGTCCCGGTTGCCGTCACTCAGTACTGTGGGGGAGTCTGATTCGCCACAAGAATGGCTGTTACGGAGACCTGGAGAAGAACACAACCTCATCCCAAAACCATTGGACAGATGAACTGCAGTTCTAATCTGAATGTGATCAGTCAGAACCTTCCTAATATGAACTTTGAACTGCTACCGAGTCACCATGACTGTACAGAGAAAAGACTGCGAAGATAGGATGAAATACAGTAGATCAATGACTAGCAAGTTACTCTTTAATGGACTTCCTGCAACAGCAAAGGGTTGATCAATTGATTGATCCATCAGAAGATTTAATGTATGCACAAAAATCATGCTGATCTGGTgtgaaaaatgtttttaatgcagCATCTGAACCCTTTTTATATTGTATCTGTTAACTAAAAAACAATCATGAATAACGCagttttaaatgtgtgtgtaaaACCTATATGTATTGTATGTACAACCAATAAAACATAGATGCTTTGTTTTGGAGCCAAGGAAAGCA
>XM_036987798.1
acgctTGACACACCAATACGtcgtttttctcaaagttgcagGAATGCCACGTGCATCCACTTATAAGCGTCGTATAGGACAGCACAACGCCGGGCGACACCGAGGTGGAGCCAAGAGGACCAGTGGAAGGGGACCTTGGGAGATGGTTCTCATCATTCATGGCTTCCCCTCTGACATAGCTGCTTTGAGGTTTGAATGGGCATGGCAGAATCCCCACTCCTCCCGACGCCTGTCCCACGTCACCCGGCGCTCAAAGAAGGAATCCAGCCTGCAGTTCCACTGGCGTGTGGTGTCCAACATGTTGCGGGTGATGCCGTGGAGCCGCCTGCCCCTCACCACCCGCTGGCTCAAGCAGGAGTACAGGATGGACTTTGAGCCTGGCCTTCAGCCGCCGCTGCACATCCCTTTGGCCTTCGGCAGCATCAGGGCCAGGAAACAGAAACCGAAGGATGTGGAAGAGGAACAAGAGGAGAAGGGTGCAGATATATGCCTCCTTTGTCAGGGGACTGTTAAGTCTGCAGATAAGATGACCTGCTTCCATCCCTTATGTCACATGACCAGCCACCTGATTTGCTTAGCCAAACACTTTCTGACGGGTGAGGCCGCACATCTCCTTCCTGTGGAGGGGGAGTGTCCCGGTTGCCGTCACTCAGTACTGTGGGGGAGTCTGATTCGCCACAAGAATGGCTGTTACGGAGACCTGGAGAAGAACACAACCTCATCCCAAAACCATTGGACAGATGAACTGCAGTTCTAATCTGAATGTGATCAGTCAGAACCTTCCTAATATGAACTTTGAACTGCTACCGAGTCACCATGACTGTACAGAGAAAAGACTGCGAAGATAGGATGAAATACAGTAGATCAATGACTAGCAAGTTACTCTTTAATGGACTTCCTGCAACAGCAAAGGGTTGATCAATTGATTGATCCATCAGAAGATTTAATGTATGCACAAAAATCATGCTGATCTGGTgtgaaaaatgtttttaatgcagCATCTGAACCCTTTTTATATTGTATCTGTTAACTAAAAAACAATCATGAATAACGCagttttaaatgtgtgtgtaaaACCTATATGTATTGTATGTACAACCAATAAAACATAGATGCTTTGTTTTGGAGCCAAGGAAAGCA

Function

NR:

description
structure-specific endonuclease subunit slx1-like isoform X1

GO: NA

KEGG:

id description
K15078 SLX1; structure-specific endonuclease subunit SLX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615406.2 False 3270 mRNA 0.45 4 32114304 32121299
XM_021615402.2 False 1365 mRNA 0.46 4 32114304 32121923
XM_021615405.2 False 1372 mRNA 0.46 4 32114304 32121948
XM_021615401.2 False 1568 mRNA 0.45 5 32114304 32122092
XM_036987798.1 True 1140 mRNA 0.48 6 32114304 32122169

Neighbor

gene id symbol gene type direction distance location
LOC110531919 LOC106577449 coding downstream 11586 32093194 ~ 32102718 (-)
LOC110531916 NA coding downstream 334092 31772967 ~ 31780212 (-)
LOC110531151 NA coding downstream 619810 31369483 ~ 31494494 (-)
LOC118965934 LOC106595224 coding downstream 1074089 31038078 ~ 31040215 (-)
LOC118965933 NA coding downstream 1279916 30832726 ~ 30834388 (-)
LOC110531923 LOC106577454 coding upstream 56110 32178279 ~ 32201170 (-)
LOC110531924 LOC106577455 coding upstream 94974 32217143 ~ 32220999 (-)
LOC110531926 NA coding upstream 99958 32222074 ~ 32239463 (-)
LOC118966025 NA coding upstream 118838 32241007 ~ 32243922 (-)
LOC110531927 LOC106577456 coding upstream 152085 32274254 ~ 32447901 (-)
G794311 LOC106577443 non-coding downstream 85859 32026071 ~ 32028445 (-)
G794255 NA non-coding downstream 184294 31929797 ~ 31930010 (-)
G794250 NA non-coding downstream 191573 31922373 ~ 31922731 (-)
G794248 NA non-coding downstream 195244 31918733 ~ 31919060 (-)
G794143 NA non-coding downstream 215106 31898984 ~ 31899198 (-)
G794508 NA non-coding upstream 504 32122673 ~ 32124772 (-)
G794537 NA non-coding upstream 49670 32171839 ~ 32171926 (-)
G794557 NA non-coding upstream 93086 32215255 ~ 32215470 (-)
G794560 NA non-coding upstream 102780 32224949 ~ 32225363 (-)
G793842 NA other downstream 452106 31661239 ~ 31662198 (-)
G793489 NA other downstream 695331 31418455 ~ 31418973 (-)
G793472 NA other downstream 710435 31403482 ~ 31403869 (-)
G792267 NA other downstream 1756340 30315310 ~ 30357964 (-)
G796733 rl32 other upstream 1928890 34051059 ~ 34057549 (-)
G797605 NA other upstream 2747786 34869955 ~ 34875879 (-)
G798195 NA other upstream 3232050 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 3263684 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 3369857 35492026 ~ 35521884 (-)

Expression

slx1b(LOC106577450) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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slx1b(LOC106577450) Expression in each Bioproject

Bar chart with 21 bars.
slx1b(LOC106577450) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network