LOC110531926


Basic Information

Item Value
gene id LOC110531926
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32222074 ~ 32239463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987801.1
gttcaagggggccgaatacttttgcaaggcactgtatttcaaGTCAAGCATCAGCCTCCCCCTGCCCGGATGTGCTCATCACCCTGCTCACCATGGGGGCCAGCGGCTACAGGAAAAAGTCTGGAGACATTGATGTGGTAAATCAAGTGACGGGAGATCGCTGCCATTTGAAGTTTGCTCCTTACAGCTACTTCTCTAGAGATGTGGCCAGGAAGGTGATGGATAAGGATGGGAAGGCGCACTATGTGCTGCCGGGGACCTGGGATGAGAAGATGGAGTTCCCCAGGGTCATGCAGAGCAGCAAGGGAGAGAACGGCACCCAGGGCCAACAGAAGACTGTCTACCAGACGCTCAAGGGCAGGGAGCTGTGGTGGAAAAACCCTCTACCGGGGTTACATTTGCATTTAATGTTGGAAGGCGTGGCGCCCACGGACAGCTGTCGACGACCCGACCAGAGGCTTATGGAGGTGGGCCAGTGGGACGAGGCCAACGTAGAGAAACAGAGGCTGGAGGAGAAGCAGCATAGTGTCCGCCGTGAGAGGGAACGGGAGGCCGCCAGCCAGCGTACAGCCAGCGAGTCAGAGGAAGCTGTCGATGAGGACTGTTTTACTGACCCTTCTCTGAAAAGCACTCGCCAAGATAACTACACGGTGCAGTGATTTAAACGCTGCGACGACCCTACTCACATAAGGGAGGCTACTGGGAGGCTAAGGAGAAAGGCAGCTGGTAGTCCTGTCCCGAAATATACTGACCTCATAATGGCTGTCTTTGACTAGAAAGTTTCCCAGGACGTAACCTACTTCATTGGACCCTACCAATGAACAGTTACACTCCTCCCATTGTGTGGATGTTTCACTCCACTGGCTCTCTGTTCTAAGAGATCTAGATGCTGCAGTCTGATCCAATGGGTGAACGGGGTATTCCTAAGACTTGGTTGCATTTTAGTCCCTAGCCCCTCTTTCCTCAGCTTCTACCCCGTCAGTGTTCACAGATCTGAAGGGTATCCTAGGTGAAGGCAATTTGGCACAAACCTCACTCCTATAAGAGGGCTAGGTGGAGCCTTCATCACACTGTGTACTCCTTcacatttgcaaaaagtcataGGGTGTGAGGAAAAGGGACATGAAATGAAACTGGGCATACGTTTTGAATAAAAGtaatctctctcctctgtctttggCATTAGTGGCGTGGGCCCAGAGCAGATGAGGTTAGATAACAGTTACACCTCTACCTACCATATTGTTCTTATATCCCTCTCTGTGAAGCTATATACTAATGTTCCTCTCTTCATCAAGAGCCTTGTGGTTGGGGGTaaacttttttttattaaatGGAATGAAACTCGGTTAATATAATTAGTCATTGAAACGATGATTGGTGGCCTTCAAGAAGTTGGAGAAGGTTTCTCATTTTTAATTTTCTGTTGATTAGTGTATTTAACAAATGAACTAAAGGTTTGGGGGTTTCTGCTAGTATGATTGTATTTGTTCATCCATCGGAAGCTTTATGAAACGCATCGTTGTGCAGTACTCCCATCATGCAGTATCAACACATCGATAGTGGGTGCCCAGAATACTGTATGTTCCTTCTCTTAAATAGTAGTTATTGTACTGTATCGGTTTTCTTACTAGGGCCTCGTCTTTCTCATAATCTATGGTCATGGATATTATGAGATGGTGAAATTAACTTTTTTTATAGGGGTGCTCTTGAGTTGAAGTTGTGAGAAGTAGACCTCTTGTCTGGTTCTTGGCTGGCTCTCTTAGTGTCCTTTCCTGTCATCCCTGCTTTCATCTCCAATGAGTGGACACATTCAgataatgtaaaaatgtatttaaaaacaaTCAGCAGAACATAATAAAAACCATTGAACGACAAACCCATTATCCGTTTGCGAAGAAAATGCATATTTCAAGAAAAATTTTCGCAGTTTCAGGAAACATATTTCAAGAAACATTTTCGCAGTTTAGGAACAATGGTTTCTACCCACAGTATGTGTTTGATGGGAAATAATAGTAGCCATGAACTGTACATGGTATTCAAAGTTGTTAAAAAAATAGTTATG
>TU904302
AACAAATGAACTAAAGGTTTGGGGGTTTCTGCTAGTATGATTGTATTTGTTCATCCATCGGAAGCTTTATGAAACGCATCGTTGTGCAGTACTCCCATCATGCAGTATCAACACATCGATAGTGGGTGCCCAGAATACTGTATGTTCCTTCTCTTAAATAGTAGTTATTGTACTGTATCGGTTTTCTTACTAGGGCCTCGTCTTTCTCATAATCTATGGTCATGGATATTATGAGATGGTGAAATTAACTTTTTTTATAGGGGTGCTCTTGAGTTGAAGTTGTGAGAAGTAGACCTCTTGTCTGGTTCTTGGCTGGCTCTCTTAGTGTCCTTTCCTGTCATCCCTGCTTTCATCTCCAATGAGTGGACACATTCAgataatgtaaaaatgtatttaaaaacaaTCAGCAGAACATAATAAAAACCATTGAACGACAAACCCATTATCCGTTTGCGAAGAAAATGCATATTTCAAGAAAAATTTTCGCAGTTTCAGGAAACATATTTCAAGAAACATTTTCGCAGTTTAGGAACAATGGTTTCTACCCACAGTATGTGTTTGATGGGAAATAATAGTAGCCATGAACTGTACATGGTATTCAAAGTTGTTAAAAAAATAGTTATGGTAAATGCTTAGTCTGTATTTGTCAAAGGGGTAATCAAGGGGAAATCAATTCT

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987801.1 False 2065 mRNA 0.45 7 32222127 32239463
TU904302 True 677 lncRNA 0.36 1 32222074 32222750

Neighbor

gene id symbol gene type direction distance location
LOC110531924 LOC106577455 coding downstream 1128 32217143 ~ 32220999 (-)
LOC110531923 LOC106577454 coding downstream 20957 32178279 ~ 32201170 (-)
slx1b LOC106577450 coding downstream 99958 32114304 ~ 32122169 (-)
LOC110531919 LOC106577449 coding downstream 119409 32093194 ~ 32102718 (-)
LOC110531916 NA coding downstream 441915 31772967 ~ 31780212 (-)
LOC118966025 NA coding upstream 1544 32241007 ~ 32243922 (-)
LOC110531927 LOC106577456 coding upstream 34791 32274254 ~ 32447901 (-)
LOC118966026 NA coding upstream 273628 32513091 ~ 32513996 (-)
LOC110531930 NA coding upstream 276606 32516069 ~ 32520096 (-)
etnppl LOC106577459 coding upstream 315896 32555359 ~ 32594324 (-)
G794557 NA non-coding downstream 6657 32215255 ~ 32215470 (-)
G794537 NA non-coding downstream 50201 32171839 ~ 32171926 (-)
G794508 NA non-coding downstream 97355 32122673 ~ 32124772 (-)
G794311 LOC106577443 non-coding downstream 193682 32026071 ~ 32028445 (-)
G794255 NA non-coding downstream 292117 31929797 ~ 31930010 (-)
G794574 NA non-coding upstream 18787 32258250 ~ 32258482 (-)
G794579 NA non-coding upstream 27926 32267389 ~ 32267630 (-)
G794582 NA non-coding upstream 30037 32269500 ~ 32269837 (-)
G794720 NA non-coding upstream 32346 32271809 ~ 32329256 (-)
G794863 NA non-coding upstream 236773 32476236 ~ 32476451 (-)
G793842 NA other downstream 559929 31661239 ~ 31662198 (-)
G793489 NA other downstream 803154 31418455 ~ 31418973 (-)
G793472 NA other downstream 818258 31403482 ~ 31403869 (-)
G792267 NA other downstream 1864163 30315310 ~ 30357964 (-)
G796733 rl32 other upstream 1811596 34051059 ~ 34057549 (-)
G797605 NA other upstream 2630492 34869955 ~ 34875879 (-)
G798195 NA other upstream 3114756 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 3146390 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 3252563 35492026 ~ 35521884 (-)
G794560 NA non-coding upstream 2199 32224949 ~ 32225363 (-)

Expression


Co-expression Network