LOC118966025


Basic Information

Item Value
gene id LOC118966025
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32241007 ~ 32243922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053223.1
gggcagtcaTTCTCCATCCAATCGGAGGCGATGTTTTGTGTTTCTGGGCTCGCCATCCGATGATAAACACAGAAGAAAACTCGGAAGTAGAATTCAAAACATGAGAGAATGAAATCGGGTTCTTGACAGTGAAAATAGCTGCAAAGCGAATGTTGAGATGAATAGTGAAAACTTTTCCATAAGTGAGAAGATTGTGTCGGCATCCTACATTCGCCAGGGGTCACAGGCACGTCGCAGTCATGAGCAGCTGATTAGACAGCTTTTGGACCAGGTAACTacatcaggggtgtattcacaaGGAACCAAACAGCAAAATGAACTGGCTGTGATGGACAGCAACAACTTCTTTGGAAACTGTGGTGTTGGTGAGAGGGAGGGCAGAGTGGCATCTAGTTTGGTGGCCCGACGACATTACAGGACAATCTGGTGACATCGCTGCAACTCAACCTAAGGATGCAGGTTCCAGTCTGCTGGGCAAGCTGACTAATTCAGTTGTACTGGACATTTTAAAACTCAGGTGTGCAAAGTGTGGCCAGTTGTTTTGTAGTTCCAATGGCAACCGGGATGAGCCTGACACTGTGCTTCCTAACACTTCGCCACAAGAGACCAAAGGCGCGCTACATCATCTGGCCCCTCATTGACCAGAAGTCCTGCTTCAATGCCATGATCACCTGCAGGTTAAGTACTAGCATGACCGTGTTCAATACCACTCTCTGTAACATTATAAAAGTAAGTTATGCCCTACAGTTTCTTGTACTCCCCATTCCTGCTCTAGATGCACCTATCAGTTCAGCTAGTTTTGAAAATGACTGAATTTTTCTAAGAGCTGCCTAAAATGCATGCTATACTTGACTCGTAGGGCCTAACTTTTGCAGAGTGTGAGACGCTCCCGTTCATTCATCCCTGCTTAGTGCAAcatttctctctgtttctatttTCAAGAATTCGGTGCACGGCTCACACATGAAAACACATAATAAAGTATATTGCGCTCTGCTCATGCCGGCAAACGTTATGCGTCCACTACCCCACTGTAGCTCCCCTGCAAGGCAACTCTTGTCCAACCCCAACATTGATCACTTTTGCTCGTTGTAACCATGAACAGGGTTTGAACCCGTGGTGGTGAGAACATTTTGGAAGGCGATGAGCTGAGAACAGATCTGGAGTCTGTGGACCTTAAGATGCAAGAGCTGGGAGCAGAGAACATCCTTTGTGTCCACTCCACTACTTCTTGCTTTGCCATCCAATCATGGTTAAATAGAGCTGTAACAAATAAAATGTCCATGTCCTATTATCATGTGCTATTATAACTGGTATCACTGGAAACAAATGTTATTTGTATAGTCTGTAAACTGTTTTATTATATAGTCTACTTCATGACATTACTCACAGAAGCATACTTCCATATTATTACAGTGTATGTTGGGTGAAGATTACCAGGGCATTATTTGATAATGACTTCCCTCTGTTCTGGCAAATTGGAGGAGCTAGCCACAATGTGTGCCAAATATGACATCCTCCATGTTGTCAACAATGCTTATGGAGTGCAGTCATCCAAGTGTATGCACTTTATTCAGCAGGTACTACTGCTCCAACTCCTCTTTCATAAATCATATTTTTCCATTCCATAGGCATAGCAAAGTTAGGTTATTTTCATAATCTCTTCAGGGGGCTCGTGTTGGAAGAATCGATGCCTTTGTACAAAGCCTGGACAAAAACTTCATGGTTCCAGTAGGTGGTGCCACAATTGCTGGTTTCAATTAGTCTTTTATTTCAGGAGATCAGCAGAATGTATCCAGGTTAGTGCTGTTTCATATCACTAAGGGCTATATGTGTTTGAACCAAGCCTGCAACCTTTTTGTGTAAAGTTGCTATTACCTGCATTAGCTACTAGTTTACTGTTATCATAGGGCTCATCTAGTGTAATTGTTCCGCCAGCCCTCAGTGTCTCTGTGCTCTGTTGTATTCCTGTGTGTCTGTATTGTCTCTGCCTGTCTTATGCTGGTGACACATTCCATTTCCCCTCTGAAATGTTGGAAGTTTGTTCATTTTGGTAGCACAGGGTCTCGATCTAATGCCCATTTTGGGGAAGCTACTTGGTGTGCTGGATTatattccagcccagcactaatgCCAGTTTCAAATAATCAACATGTCATGAAATCAGGTATGTTAGTGCTTGGCTACAATAAAGACCTGCATGTGGTAGTATGTGTTGTAGTAGGATATGTTGCCTAAAAGATGAgaataaaataaacagaaatgtCAGTTtgcaactacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccaca
>XR_005053224.1
gggcagtcaTTCTCCATCCAATCGGAGGCGATGTTTTGTGTTTCTGGGCTCGCCATCCGATGATAAACACAGAAGAAAACTCGGAAGTAGAATTCAAAACATGAGAGAATGAAATCGGGTTCTTGACAGTGAAAATAGCTGCAAAGCGAATGTTGAGATGAATAGTGAAAACTTTTCCATAAGTGAGAAGATTGTGTCGGCATCCTACATTCGCCAGGGGTCACAGGCACGTCGCAGTCATGAGCAGCTGATTAGACAGCTTTTGGACCAGGTAACTacatcaggggtgtattcacaaGGAACCAAACAGCAAAATGAACTGGCTGTGATGGACAGCAACAACTTCTTTGGAAACTGTGGTGTTGGTGAGAGGGAGGGCAGAGTGGCATCTAGTTTGGTGGCCCGACGACATTACAGGACAATCTGGTGACATCGCTGCAACTCAACCTAAGGATGCAGGTTCCAGTCTGCTGGGCAAGCTGACTAATTCAGTTGTACTGGACATTTTAAAACTCAGGTGTGCAAAGTGTGGCCAGTTGTTTTGTAGTTCCAATGGCAACCGGGATGAGCCTGACACTGTGCTTCCTAACACTTCGCCACAAGAGACCAAAGGCGCGCTACATCATCTGGCCCCTCATTGACCAGAAGTCCTGCTTCAATGCCATGATCACCTGCAGGGTTTGAACCCGTGGTGGTGAGAACATTTTGGAAGGCGATGAGCTGAGAACAGATCTGGAGTCTGTGGACCTTAAGATGCAAGAGCTGGGAGCAGAGAACATCCTTTGTGTCCACTCCACTACTTCTTGCTTTGCCATCCAATCATGGTTAAATAGAGCTGTAACAAATAAAATGTCCATGTCCTATTATCATGTGCTATTATAACTGGTATCACTGGAAACAAATGTTATTTGTATAGTCTGTAAACTGTTTTATTATATAGTCTACTTCATGACATTACTCACAGAAGCATACTTCCATATTATTACAGTGTATGTTGGGTGAAGATTACCAGGGCATTATTTGATAATGACTTCCCTCTGTTCTGGCAAATTGGAGGAGCTAGCCACAATGTGTGCCAAATATGACATCCTCCATGTTGTCAACAATGCTTATGGAGTGCAGTCATCCAAGTGTATGCACTTTATTCAGCAGGTACTACTGCTCCAACTCCTCTTTCATAAATCATATTTTTCCATTCCATAGGCATAGCAAAGTTAGGTTATTTTCATAATCTCTTCAGGGGGCTCGTGTTGGAAGAATCGATGCCTTTGTACAAAGCCTGGACAAAAACTTCATGGTTCCAGTAGGTGGTGCCACAATTGCTGGTTTCAATTAGTCTTTTATTTCAGGAGATCAGCAGAATGTATCCAGGTTAGTGCTGTTTCATATCACTAAGGGCTATATGTGTTTGAACCAAGCCTGCAACCTTTTTGTGTAAAGTTGCTATTACCTGCATTAGCTACTAGTTTACTGTTATCATAGGGCTCATCTAGTGTAATTGTTCCGCCAGCCCTCAGTGTCTCTGTGCTCTGTTGTATTCCTGTGTGTCTGTATTGTCTCTGCCTGTCTTATGCTGGTGACACATTCCATTTCCCCTCTGAAATGTTGGAAGTTTGTTCATTTTGGTAGCACAGGGTCTCGATCTAATGCCCATTTTGGGGAAGCTACTTGGTGTGCTGGATTatattccagcccagcactaatgCCAGTTTCAAATAATCAACATGTCATGAAATCAGGTATGTTAGTGCTTGGCTACAATAAAGACCTGCATGTGGTAGTATGTGTTGTAGTAGGATATGTTGCCTAAAAGATGAgaataaaataaacagaaatgtCAGTTtgcaactacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccaca

Function

NR:

description
PREDICTED: O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

GO:

id name namespace
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016785 transferase activity, transferring selenium-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053223.1 False 2332 mRNA 0.43 5 32241007 32243922
XR_005053224.1 True 1904 mRNA 0.43 6 32241007 32243922

Neighbor

gene id symbol gene type direction distance location
LOC110531926 NA coding downstream 1544 32222074 ~ 32239463 (-)
LOC110531924 LOC106577455 coding downstream 20008 32217143 ~ 32220999 (-)
LOC110531923 LOC106577454 coding downstream 39837 32178279 ~ 32201170 (-)
slx1b LOC106577450 coding downstream 118838 32114304 ~ 32122169 (-)
LOC110531919 LOC106577449 coding downstream 138289 32093194 ~ 32102718 (-)
LOC110531927 LOC106577456 coding upstream 30332 32274254 ~ 32447901 (-)
LOC118966026 NA coding upstream 269169 32513091 ~ 32513996 (-)
LOC110531930 NA coding upstream 272147 32516069 ~ 32520096 (-)
etnppl LOC106577459 coding upstream 311437 32555359 ~ 32594324 (-)
LOC110531933 NA coding upstream 355445 32599367 ~ 32956074 (-)
G794560 NA non-coding downstream 15644 32224949 ~ 32225363 (-)
G794557 NA non-coding downstream 25537 32215255 ~ 32215470 (-)
G794537 NA non-coding downstream 69081 32171839 ~ 32171926 (-)
G794508 NA non-coding downstream 116235 32122673 ~ 32124772 (-)
G794574 NA non-coding upstream 14328 32258250 ~ 32258482 (-)
G794579 NA non-coding upstream 23467 32267389 ~ 32267630 (-)
G794582 NA non-coding upstream 25578 32269500 ~ 32269837 (-)
G794720 NA non-coding upstream 27887 32271809 ~ 32329256 (-)
G794863 NA non-coding upstream 232314 32476236 ~ 32476451 (-)
G794311 LOC106577443 other downstream 212739 32026071 ~ 32028445 (-)
G793842 NA other downstream 578809 31661239 ~ 31662198 (-)
G793489 NA other downstream 822034 31418455 ~ 31418973 (-)
G793472 NA other downstream 837138 31403482 ~ 31403869 (-)
G792267 NA other downstream 1883043 30315310 ~ 30357964 (-)
G796733 rl32 other upstream 1807137 34051059 ~ 34057549 (-)
G797605 NA other upstream 2626033 34869955 ~ 34875879 (-)
G798195 NA other upstream 3110297 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 3141931 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 3248104 35492026 ~ 35521884 (-)

Expression


Co-expression Network