LOC110531930


Basic Information

Item Value
gene id LOC110531930
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32516069 ~ 32520096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474778.2
TCAAATGTTTCGCTTACCTGCTAAGACCTTTAGTGTTGACGTAGATATTGTGCGACACTCAACCAGGTTCTAGAAAAAAGGAACTCCCGCTTGCAGCGAAACGAAATATTCCTTCGAGGACTCTCGAGGACTCTCCCAAGCCAGCAACGCTTCCACCGGCTCTTGTGTTCCCtcataaagcacatgagggaacacaagcatacatagattacaaacaatagacaatcgagctagggggtacaatatcacattacaattacacaaggaccttaaaggacatgcatatacttacaattctaacagcttttttgttagtagagcatttaactgtcttaaaatacagttcaatttctttttgtagggtactaaaatgtggttttctgtttgtgtatatgaatagtagtagCCATACTAGCCTCTAAGTCGCTCGTTTTATCATTACCTCATTATATTAATATAATAATTTTTGTATAGCtttttaaaaaaagtattattgtTGAAAACTGTGTTTATCCGTTCAGTTAGTGACTTTTGTAATTCGATTATTGTGTTCTGTCTTTTTTTGTCTCGTTTAGCTAGCTATTAACGCGCTAACCATTAAGGTGGCTAGTAATTAGTCAACACCCCTGCTACCATGGCATTGTTTTTACACAAGGTGCTTGAAGAGCTGCCAAAGGTAACAGTGACGGGTGTACATCGTTTGGCCAAGCAAAGCACCGACCTCCAAGTTGGAAAAAGGTTTAAAACTTTGTCTCCAGTTACCTTTTCTACTACGAAGGTTGTACTGAAGCGCTCTGAGCCAGAAACAATGACACATCACTGTTTATGTGTTGCTGGCACTGCATTATGCAAACACACAGTTGCATTACTATTCCAGTCTGCACACTATTCCCAGATGGGAACATCAGTCATCCCACCTGTGCACAGAGGCCAGGCAGCAGTGGCATAAGCCCAGGACTATGGGTCTGAAACCTGGGCCTATAGGCAAAATGACCATCACCAAGCCCACCAAAAAGTGCATGGCAGAAAGAGGGATTAGAAGTACACTCTACAGTGCCCTTCTTGGACCGCTCCCTGACTTCTCAGTTCTTCAGATAGAAGAGGCATAAAATAACTTTGACCCTCAATCCAAGCCATTGATCTGCAGCATGGGGATGTCTGCTGAAAAGCTTTTAGCCAAGGAAAGGTGCAAGTGGGGAGCCTCCTGTCTTACCAGCAGCCACCAATCACAAAGCAACACATAGTTCACCATAAGGAGACACCACCATTCCCTTCACTGCCCCTGGATTGCTACAGACTGGAGAACAACTTTCAAGGCTGCACATTTGTGTTCAGTGAAGGAGACCAGCTTCACATAGTCTCTTCAGGTGAGCTTCGCAACAGCCCATAAAATAGAGGAAGCTACTAGAGAACAGAGTGCTTTCTCCGACTGGCAGGTGCTACAGAAACCAAGACTGACCTCGTCACGGTTCTGAGAGGCTTGCCATGTGAGAGTGCCTGCGGATGTCTGCCATCTAGCCGAAAGGATCCTCAAAGGCACAGCACCAACAGCTGACATGAAGAGGGGACTGGAGTTGGAGATGGAATCAGCCAGTGACTACTGCAAGATGCAGAATGTCAAATGCTCACCCTGTGGCCTCATACATCCTGACATCCCTTGGTTTGCTTCTTCTCCTGATGGCCTGGTCTACAACCCTCTCGAGCATCCACCTTTTGGCCTAGTTGAGATTAAGAACCCAAACGTTATTATCAATACATGGACTACAGGGTGTTAGACAATGTGGATGGTGACAGCAAAAAAAAGGAAAGATGCATTGCAGTTGTAGCTCATTGCACCTTGGCCCATGCCTTCACAAGAGGCCCACACTGGTAGTTTGTGAGAAGGCAAGCCACAGCCCAGATGCAGTTGATGCTTCCCATCAGTGACTTGGGGATCTCTGACTGAAACAGCTTGTTCAGTTTAATTCTGCCAATTAATCTCTCAATGTGGACTCTATAAGATGAGCAATCTCTTGTGTTTTGATGGACCTGTGCTGCTGGCATTTGGCTCCGTTTAGACAGAAAGGGTGGACGGTAGACCTTGTCTGGCACACAGTCATCAATCATGAACCCCTTGTCTGCTATCACTGCCGTGTCTTCAGTGAGCAAGTCAAACAgcctgatttatttattttttattttttaatatctCTGTTGCTGATGGAGCCCGCATACAATTCTGACTACAGTAACTGATCCATGTGGTGCCATGGGGCTTTCAAGGTGCAGTGGGACTTGTAATGACTGTGTAGAGGGAGACTGGCTGGCTGCTGGCATTTCAACTCGGTACAGTCAATAATGACTTGGGTGCCTACCTACTGAGCTCCTTCGGcaacacatcatggacaaactgaattggtccacacagacagcgttgtgaagaaggcgcagcagcacctcttcaacctcaggaggctttagaaatttggcttgtcaccaaaagcactcacacttctacagatgcacaatcgagagcatcctgtcgggctgtatcaccgcctggtacggcaactgctccacccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacttgccctccaggacactgtTAGatttgcgtcaattcgaatctggtatcaggataaatatgacaatgagtgattgtatactatgtattttttattagctaagcaataagtggtaaattcaattttcgtatatacggactctctgtcccacctcgcagggcaaacagagaactgacttgttcctgacaaagatattataatatACCCTGATGACtagtagttcctgcttccgagccgccctgtcagagtagagactgggcgtggtttaaactcacccagcctatcgttgattgttgtcGTACGAGCTGGTACCAGCCCCCGGGCGCTccagttgatagatgtaacttGCTGTGTCGAGTATCTATGCGCTCATTCCCTAGATACCGTTATCACATATCTGGTTTCTGTTATTGTTAAGTTTGAGTTCTAACAAAAACAGTCTGTGGTTTGCTACACTACGTTCTGTATGTGTCCGtttatgttattctgtatttttccatcatgagaaaggcccatggccctgaaactgt
>XR_002474779.2
TCAAATGTTTCGCTTACCTGCTAAGACCTTTAGTGTTGACGTAGATATTGTGCGACACTCAACCAGGTTCTAGAAAAAAGGAACTCCCGCTTGCAGCGAAACGAAATATTCCTTCGAGGACTCTCGAGGACTCTCCCAAGCCAGCAACGCTTCCACCGGCTCTTGTGTTCCCtcataaagcacatgagggaacacaagcatacatagattacaaacaatagacaatcgagctaggggCTAGCTATTAACGCGCTAACCATTAAGGTGGCTAGTAATTAGTCAACACCCCTGCTACCATGGCATTGTTTTTACACAAGGTGCTTGAAGAGCTGCCAAAGGTAACAGTGACGGGTGTACATCGTTTGGCCAAGCAAAGCACCGACCTCCAAGTTGGAAAAAGGTTTAAAACTTTGTCTCCAGTTACCTTTTCTACTACGAAGGTTGTACTGAAGCGCTCTGAGCCAGAAACAATGACACATCACTGTTTATGTGTTGCTGGCACTGCATTATGCAAACACACAGTTGCATTACTATTCCAGTCTGCACACTATTCCCAGATGGGAACATCAGTCATCCCACCTGTGCACAGAGGCCAGGCAGCAGTGGCATAAGCCCAGGACTATGGGTCTGAAACCTGGGCCTATAGGCAAAATGACCATCACCAAGCCCACCAAAAAGTGCATGGCAGAAAGAGGGATTAGAAGTACACTCTACAGTGCCCTTCTTGGACCGCTCCCTGACTTCTCAGTTCTTCAGATAGAAGAGGCATAAAATAACTTTGACCCTCAATCCAAGCCATTGATCTGCAGCATGGGGATGTCTGCTGAAAAGCTTTTAGCCAAGGAAAGGTGCAAGTGGGGAGCCTCCTGTCTTACCAGCAGCCACCAATCACAAAGCAACACATAGTTCACCATAAGGAGACACCACCATTCCCTTCACTGCCCCTGGATTGCTACAGACTGGAGAACAACTTTCAAGGCTGCACATTTGTGTTCAGTGAAGGAGACCAGCTTCACATAGTCTCTTCAGGTGAGCTTCGCAACAGCCCATAAAATAGAGGAAGCTACTAGAGAACAGAGTGCTTTCTCCGACTGGCAGGTGCTACAGAAACCAAGACTGACCTCGTCACGGTTCTGAGAGGCTTGCCATGTGAGAGTGCCTGCGGATGTCTGCCATCTAGCCGAAAGGATCCTCAAAGGCACAGCACCAACAGCTGACATGAAGAGGGGACTGGAGTTGGAGATGGAATCAGCCAGTGACTACTGCAAGATGCAGAATGTCAAATGCTCACCCTGTGGCCTCATACATCCTGACATCCCTTGGTTTGCTTCTTCTCCTGATGGCCTGGTCTACAACCCTCTCGAGCATCCACCTTTTGGCCTAGTTGAGATTAAGAACCCAAACGTTATTATCAATACATGGACTACAGGGTGTTAGACAATGTGGATGGTGACAGCAAAAAAAAGGAAAGATGCATTGCAGTTGTAGCTCATTGCACCTTGGCCCATGCCTTCACAAGAGGCCCACACTGGTAGTTTGTGAGAAGGCAAGCCACAGCCCAGATGCAGTTGATGCTTCCCATCAGTGACTTGGGGATCTCTGACTGAAACAGCTTGTTCAGTTTAATTCTGCCAATTAATCTCTCAATGTGGACTCTATAAGATGAGCAATCTCTTGTGTTTTGATGGACCTGTGCTGCTGGCATTTGGCTCCGTTTAGACAGAAAGGGTGGACGGTAGACCTTGTCTGGCACACAGTCATCAATCATGAACCCCTTGTCTGCTATCACTGCCGTGTCTTCAGTGAGCAAGTCAAACAgcctgatttatttattttttattttttaatatctCTGTTGCTGATGGAGCCCGCATACAATTCTGACTACAGTAACTGATCCATGTGGTGCCATGGGGCTTTCAAGGTGCAGTGGGACTTGTAATGACTGTGTAGAGGGAGACTGGCTGGCTGCTGGCATTTCAACTCGGTACAGTCAATAATGACTTGGGTGCCTACCTACTGAGCTCCTTCGGcaacacatcatggacaaactgaattggtccacacagacagcgttgtgaagaaggcgcagcagcacctcttcaacctcaggaggctttagaaatttggcttgtcaccaaaagcactcacacttctacagatgcacaatcgagagcatcctgtcgggctgtatcaccgcctggtacggcaactgctccacccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacttgccctccaggacactgtTAGatttgcgtcaattcgaatctggtatcaggataaatatgacaatgagtgattgtatactatgtattttttattagctaagcaataagtggtaaattcaattttcgtatatacggactctctgtcccacctcgcagggcaaacagagaactgacttgttcctgacaaagatattataatatACCCTGATGACtagtagttcctgcttccgagccgccctgtcagagtagagactgggcgtggtttaaactcacccagcctatcgttgattgttgtcGTACGAGCTGGTACCAGCCCCCGGGCGCTccagttgatagatgtaacttGCTGTGTCGAGTATCTATGCGCTCATTCCCTAGATACCGTTATCACATATCTGGTTTCTGTTATTGTTAAGTTTGAGTTCTAACAAAAACAGTCTGTGGTTTGCTACACTACGTTCTGTATGTGTCCGtttatgttattctgtatttttccatcatgagaaaggcccatggccctgaaactgt

Function

NR:

description
uncharacterized protein LOC111188275

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474778.2 False 3152 mRNA 0.45 4 32516069 32520096
XR_002474779.2 True 2814 mRNA 0.47 5 32516069 32520096

Neighbor

gene id symbol gene type direction distance location
LOC118966026 NA coding downstream 2073 32513091 ~ 32513996 (-)
LOC110531927 LOC106577456 coding downstream 68168 32274254 ~ 32447901 (-)
LOC118966025 NA coding downstream 272147 32241007 ~ 32243922 (-)
LOC110531926 NA coding downstream 276606 32222074 ~ 32239463 (-)
LOC110531924 LOC106577455 coding downstream 295070 32217143 ~ 32220999 (-)
etnppl LOC106577459 coding upstream 35263 32555359 ~ 32594324 (-)
LOC110531933 NA coding upstream 79271 32599367 ~ 32956074 (-)
trnap-agg-9 NA coding upstream 509641 33029737 ~ 33029808 (-)
trnap-agg-10 NA coding upstream 511025 33031121 ~ 33031192 (-)
trnap-agg-11 NA coding upstream 512413 33032509 ~ 33032580 (-)
G795177 NA non-coding downstream 13700 32501741 ~ 32502369 (-)
G795175 rpl34 non-coding downstream 17140 32494470 ~ 32498929 (-)
G795168 NA non-coding downstream 22324 32493459 ~ 32493745 (-)
G794880 NA non-coding downstream 26554 32489093 ~ 32489515 (-)
G794879 NA non-coding downstream 27061 32488795 ~ 32489008 (-)
G795170 NA non-coding upstream 16414 32536510 ~ 32549007 (-)
G795182 NA non-coding upstream 21070 32541166 ~ 32542179 (-)
G795188 NA non-coding upstream 74274 32594370 ~ 32594623 (-)
G795198 NA non-coding upstream 107646 32627742 ~ 32651703 (-)
G795236 NA non-coding upstream 166086 32686182 ~ 32715890 (-)
G794311 LOC106577443 other downstream 487801 32026071 ~ 32028445 (-)
G793842 NA other downstream 853871 31661239 ~ 31662198 (-)
G793489 NA other downstream 1097096 31418455 ~ 31418973 (-)
G793472 NA other downstream 1112200 31403482 ~ 31403869 (-)
G792267 NA other downstream 2158105 30315310 ~ 30357964 (-)
G796733 rl32 other upstream 1530963 34051059 ~ 34057549 (-)
G797605 NA other upstream 2349859 34869955 ~ 34875879 (-)
G798195 NA other upstream 2834123 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 2865757 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 2971930 35492026 ~ 35521884 (-)

Expression


Co-expression Network