trnag-ucc-3


Basic Information

Item Value
gene id trnag-ucc-3
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33032239 ~ 33061120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnag-ucc-3
gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccagccaatgca
>TU905375
ggaattcatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcctatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgatagtcggcattccgacaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaacccgggacctctcgcaccctaagcgagaatcatacccctagaccaacgagccttatgcaaaagttatttttttgctttctgcagcaatgacagtgaagatatcgattgacgtgtccatggtgcttggaacatttgaacatcatgtgagtgttttgtgctttacttgtgagcataacagtcttccaaaatcttgaccatgcttcagtgttttgtgctttacttgtgagcataacagtcttccaaaatcttgaccatgcttcagttcaaatcttctgtagttcatctgctgtgtctttcacattctgtcttgttcagtcgcgacagcaaaatgatgacgagtttttacaaattaataaagtgcaaatgagatcaattcatttttttaaaaacaaatgaaaaaataagacttccaaaagaatggaactcatttattttgagtcaaatgacgcaaaggtacgtgaatcaaagtcaattaattttgaaaatacccattcaaatagatccgttttcaactagagagattaagactcggcgtatccgtctcaatcctccacaactgcttatgttaaccctccatatctgcagtgaaagatggtggacctagatcggtttttgtcaaaccatgagacaatacctataatcggtcttctcacaaaaacatctctagcttccgaaccgtttgacctacaaattcatatgaccactctctggaatgaggagaccctcacgaacacggtggtattctcaatttttctctacatcccccacaagtgtcaggagactcgtctgaagtcacaagcgtctatgtgccaagttctgtttgtagaatccaaaatcttgggctacaaactaatgtgaccccacttgtcgcaatgttctccgttttgccctacgttcccaacaagtgtcacgggactaatctgaaggtaacctgtagtgattaaaacgatagattttttaaccagggacctctcgcaacctaagccataatcatacacctaaaccgtgaaagtgaattatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccagccaatgcagagcctgaggaattaatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaagttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcccatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgataatcggcgttccgaccagtggcccaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaaccagggacctctcgcaacctaagccataatcatacacctaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ucc-3 False 72 mRNA 0.56 1 33034945 33035016
TU905375 True 1799 lncRNA 0.42 4 33032239 33061120

Neighbor

gene id symbol gene type direction distance location
ostc ostc coding upstream 495294 32520078 ~ 32539651 (+)
rpl34 rpl34 coding upstream 536343 32494490 ~ 32498602 (+)
zgc:112271 bola2 coding upstream 910192 32122682 ~ 32124851 (+)
LOC110531922 LOC106577451 coding upstream 920646 32111792 ~ 32114299 (+)
LOC118965935 NA coding upstream 956222 32077618 ~ 32078723 (+)
trnag-ucc-4 NA coding downstream 435 33035451 ~ 33035522 (+)
trnag-ucc-6 NA coding downstream 7576 33042592 ~ 33042663 (+)
trnag-ucc-7 NA coding downstream 8987 33044003 ~ 33044074 (+)
trnag-ucc-8 NA coding downstream 11795 33046811 ~ 33046882 (+)
trnag-ucc-9 NA coding downstream 13064 33048080 ~ 33048151 (+)
G795141 NA non-coding upstream 5764 32971724 ~ 33029181 (+)
G795146 NA non-coding upstream 72574 32960420 ~ 32962371 (+)
G795016 NA non-coding upstream 205818 32751174 ~ 32829127 (+)
G795010 NA non-coding upstream 295882 32738405 ~ 32739063 (+)
G795002 NA non-coding upstream 308666 32725966 ~ 32726279 (+)
trnag-ucc-10 NA non-coding downstream 11264 33046280 ~ 33049435 (+)
G795437 NA non-coding downstream 71233 33106249 ~ 33106723 (+)
G795438 NA non-coding downstream 81191 33116207 ~ 33123231 (+)
G795442 NA non-coding downstream 108365 33143381 ~ 33143673 (+)
G795445 NA non-coding downstream 153332 33188348 ~ 33233498 (+)
G794886 LOC106577459 other upstream 447557 32583606 ~ 32587388 (+)
G794893 NA other upstream 532196 32502396 ~ 32502749 (+)
G794892 NA other upstream 532590 32501847 ~ 32502355 (+)
LOC110531915 LOC106595846 other upstream 1278500 31753182 ~ 31757502 (+)
G796495 LOC106613263 other downstream 1086406 34121422 ~ 34121740 (+)
G797056 NA other downstream 1520915 34555931 ~ 34556622 (+)
G797932 pphln other downstream 2329972 35364988 ~ 35372148 (+)
G799053 NA other downstream 3278113 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 3999402 37034418 ~ 37035918 (+)
trnag-ucc-18 NA coding downstream 84 33061204 ~ 33061275 (+)
trnag-ucc-19 NA coding downstream 589 33029550 ~ 33066274 (+)
trnag-ucc-20 NA coding downstream 1094 33062214 ~ 33062285 (+)
trnag-ucc-21 NA coding downstream 3764 33064884 ~ 33064955 (+)
trnag-ucc-22 NA coding downstream 4269 33065389 ~ 33065460 (+)
G795447 NA non-coding downstream 169955 33231075 ~ 33232779 (+)

Expression


Co-expression Network