XLOC_026652 (b9d1)


Basic Information

Item Value
gene id XLOC_026652
gene name b9d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39691525 ~ 39696066 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051910
TGTCGTCTGCCGTACTGAAAGCGTCCATAGCAGCCAGGGAGCTGTTGACAACGAGGAACCATTAAATGACAGATATTTAAGCACAGCGCGGATCGTTTGCTGTGATTTAAATGCTTTTCTGTCCGGTAATGGTGCGAAAATGACCTCTAACAATCCAGCTGTATTTCTCCTCATGGTTAATGGACAAATCGAATCAGCCGATTTTCCAGAATATGATGATCTATACTGCaagtattgttttgtttatggACACGACTGGGCGCCCACATCAGGTTTGGAAGAAGGAATTTCTCAAATAACATCAAAAGGTCGTCTGTCTCAGAGTTTGGTGTGGAATTTCCCATTGGACATCACATTTAAAAGCACTAATCCGTTTGGCTGGCCTCAGATTGTAGTGAGTGTGTATGGCCCTGACACATTTGGAAATGATGTTGTTAGAGGTTATGGAGCCGTGCACATCCCGTTCACACCTGGAAAACACACAAAGACCATTCCCATGTTTGTTCCAGAGTCTACGTCAAGACTGCAGAAGTTCACCAGCTGGCTGATGGGAAGGCGTCCAGAATTCACAGATCCCAAGGTTGTTGCTCAAGGAGAGGGAAGAGAAGTGACGAGGGTACGCTCTCAGGGTTTTGTGACTCTACAATTCAACATTGTGACTAAGGACATGAAGAAGCTGGGATATGACACTACATCTATAGAGCATTCACCTGCAGGACTTACAAGAGCATCTCAACAGCCCTGATAATCGCCTTCCCcattctttttttgttgtatgTCTTCTTTATATCTTTGTAATGTTCATTTTCGGTCCCATTTTATATCAAGTACTTAACTTAATATGTACCAGTAGGTCATTAAAAAGTACTTTTACATTGTGCATACTTTACATTGTGCTTGTACttaattaaatacctgcatgtcaTTAATCtgaaattaatttctgtaattacactgttgaccatgcCCTTACACTTTAATCCACCCTTAAATCTACCCATACACCCAAACGTGTCCCTAACACTATGCATATCCCAGCtcaagtgttctgcaatacattatgaacacattaagcacattgtatttatttttagatgtaagtacatattagttaagaacacttgatataaagtgggacctaattttttattaaagtgatCTTGTGAGTTtcttaaatgtgtttaataattagcCTTGTACTTACTTTGCTGATGAAGTATGATTCTAATCGGTGGGTTTGTCTATTTTCTCTTCAACTCATGTTCACGTTGGGTCAAGGTTATTACAGTTGACcaaaattacaaaacatttttattacttGAAAATGAGTTTTAGCTTATTAAATAAAGAGAAGGGAGAAAAAGAGTAATGATTTCAGCTATAAGACAAGGCTGCATTAGTAATTTTCATGTAACTTGTGtcctaaaatgaaaaaaagacaaTCATGAACCAATAAAAAAGGAAACAGTTGAAAAACATAA
>TCONS_00051911
ACATCGATTTTTAGAGCTCGTGTTAATGTGTGTGCAAAGCCTGTAATTAATGAGGGGTTTGGAAGAAGGAATTTCTCAAATAACATCAAAAGGTCGTCTGTCTCAGAGTTTGGTGTGGAATTTCCCATTGGACATCACATTTAAAAGCACTAATCCGTTTGGCTGGCCTCAGATTGTAGTGAGTGTGTATGGCCCTGACACATTTGGAAATGATGTTGTTAGAGGTTATGGAGCCGTGCACATCCCGTTCACACCTGGAAAACACACAAAGACCATTCCCATGTTTGTTCCAGAGTCTACGTCAAGACTGCAGAAGTTCACCAGCTGGCTGATGGGAAGGCGTCCAGAATTCACAGATCCCAAGGTTGTTGCTCAAGGAGAGGGAAGAGAAGTGACGAGGGTACGCTCTCAGGGTTTTGTGACTCTACAATTCAACATTGTGACTAAGGACATGAAGAAGCTGGGATATGACACTACATCTATAGAGCATTCACCTGCAGGACTTACAAGAGCATCTCAACAGCCCTGATAATCGCCTTCCCcattctttttttgtt
>TCONS_00051912
GCCGTACTGAAAGCGTCCATAGCAGCCAGGGAGCTGTTGACAACGAGGAACCATTAAATGACAGATATTTAAGCACAGCGCGGATCGTTTGCTGTGATTTAAATGCTTTTCTGTCCGGTAATGGTGCGAAAATGACCTCTAACAATCCAGCTGTATTTCTCCTCATGGTTAATGGACAAATCGAATCAGCCGATGTGAGTTAACATCGATTTTTAGAGCTCGTGTTAATGTGTGTGCAAAGCCTGTAATTAATGAGGGTAAAGTAACTACTTACACACCGTATTTTGTTTGAAGTTTCCAGAATATGATGATCTATACTGCaagtattgttttgtttatggACACGACTGGGCGCCCACATCAGGTTTGGAAGAAGGAATTTCTCAAATAACATCAAAAGGTCGTCTGTCTCAGAGTTTGGTGTGGAATTTCCCATTGGACATCACATTTAAAAGCACTAATCCGTTTGGCTGGCCTCAGATTGTAGTGAGTGTGTATGGCCCTGACACATTTGGAAATGATGTTGTTAGAGGTTATGGAGCCGTGCACATCCCGTTCACACCTGGAAAACACACAAAGACCATTCCCATGTTTGTTCCAGAGTCTACGTCAAGACTGCAGAAGTTCACCAGCTGGCTGATGGGAAGGCGTCCAGAATTCACAGATCCCAAGGTTGTTGCTCAAGGAGAGGGAAGAGAAGTGACGAGGGTACGCTCTCAGGGTTTTGTGACTCTACAATT

Function

symbol description
b9d1 Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; ciliary basal body; and ciliary transition zone. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1).

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0036038 MKS complex cellular_component
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-467 Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; ciliary basal body; and ciliary transition zone. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000011727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051910 False 1481 mRNA 0.38 7 39691525 39696066
TCONS_00051911 False 557 mRNA 0.45 6 39692233 39695856
TCONS_00051912 True 740 lncRNA 0.44 6 39692358 39696058

Neighbor

gene id symbol gene type direction distance location
XLOC_026651 BX322795.1 coding downstream 41963 39649445 ~ 39649562 (-)
XLOC_026650 grapa coding downstream 43504 39630930 ~ 39648021 (-)
XLOC_026649 si:dkey-27o4.1 coding downstream 64113 39619571 ~ 39627412 (-)
XLOC_026648 NA coding downstream 128224 39561784 ~ 39563301 (-)
XLOC_026647 zgc:100868 coding downstream 202886 39472342 ~ 39488639 (-)
XLOC_026653 BX649356.2 coding upstream 249799 39945865 ~ 39951527 (-)
XLOC_026654 BX649356.3 coding upstream 261292 39957358 ~ 39957474 (-)
XLOC_026655 llgl1 coding upstream 274289 39970355 ~ 40054749 (-)
XLOC_026656 myo15aa coding upstream 360419 40056485 ~ 40136743 (-)
XLOC_026657 BX649547.1 coding upstream 392619 40088685 ~ 40088801 (-)
XLOC_026646 CU464118.1 non-coding downstream 236622 39371873 ~ 39454903 (-)
XLOC_026637 NA non-coding downstream 577978 39112314 ~ 39113547 (-)
XLOC_026636 NA non-coding downstream 715827 38971435 ~ 38975698 (-)
XLOC_026659 NA non-coding upstream 484070 40180136 ~ 40181654 (-)
XLOC_026666 NA non-coding upstream 699997 40396063 ~ 40405386 (-)

Expression


Co-expression Network